FF:56-12G2: Difference between revisions

Latest revision as of 19:18, 4 June 2020

Name:	bone (os femoris), adult
Species:	Mouse (Mus musculus)
Library ID:	CNhs10483
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	bone (os femoris)
dev stage	adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00006018

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10483		CAGE		DRX008936		DRR009810

Accession ID Mm9

Library id		BAM		CTSS
CNhs10483		DRZ001235		DRZ002618

Accession ID Mm10

Library id		BAM		CTSS
CNhs10483		DRZ012585		DRZ013968

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10483

0	0
1	0
10	0
100	0
1000	0.693
1001	0.0264
1002	-0.116
1003	-0.0139
1004	0
1005	0.5
1006	0.351
1007	-0.0321
1008	0
1009	-0.19
101	-0.032
1010	0
1011	0
1012	0
1013	0.104
1014	-0.0874
1015	-0.0806
1016	-0.389
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	0.151
1023	0
1024	0.136
1025	0
1026	0
1027	0
1028	0
1029	-0.148
103	0.275
1030	0
1031	-0.458
1032	-0.294
1033	0
1034	0
1035	0
1036	0.0919
1037	0
1038	-0.109
1039	-0.0731
104	0
1040	-0.216
1041	0.275

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10483

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.08556e-8
MA0003.1	MA0003.1	0.0296
MA0004.1	MA0004.1	0.551
MA0006.1	MA0006.1	0.164
MA0007.1	MA0007.1	0.531
MA0009.1	MA0009.1	0.697
MA0014.1	MA0014.1	0.752
MA0017.1	MA0017.1	0.478
MA0018.2	MA0018.2	0.00909
MA0019.1	MA0019.1	0.273
MA0024.1	MA0024.1	0.614
MA0025.1	MA0025.1	0.809
MA0027.1	MA0027.1	0.582
MA0028.1	MA0028.1	0.816
MA0029.1	MA0029.1	0.724
MA0030.1	MA0030.1	0.922
MA0031.1	MA0031.1	0.898
MA0035.2	MA0035.2	1.94937e-5
MA0038.1	MA0038.1	0.0242
MA0039.2	MA0039.2	0.184
MA0040.1	MA0040.1	0.117
MA0041.1	MA0041.1	0.276
MA0042.1	MA0042.1	0.405
MA0043.1	MA0043.1	0.0532
MA0046.1	MA0046.1	4.74323e-13
MA0047.2	MA0047.2	0.435
MA0048.1	MA0048.1	0.375
MA0050.1	MA0050.1	7.33306e-6
MA0051.1	MA0051.1	1.66842e-5
MA0052.1	MA0052.1	2.25739e-10
MA0055.1	MA0055.1	0.566
MA0057.1	MA0057.1	0.639
MA0058.1	MA0058.1	0.351
MA0059.1	MA0059.1	0.41
MA0060.1	MA0060.1	0.121
MA0061.1	MA0061.1	0.0184
MA0062.2	MA0062.2	0.186
MA0065.2	MA0065.2	0.0341
MA0066.1	MA0066.1	0.222
MA0067.1	MA0067.1	0.751
MA0068.1	MA0068.1	0.0746
MA0069.1	MA0069.1	0.383
MA0070.1	MA0070.1	0.395
MA0071.1	MA0071.1	0.451
MA0072.1	MA0072.1	0.416
MA0073.1	MA0073.1	0.0988
MA0074.1	MA0074.1	0.562
MA0076.1	MA0076.1	0.45
MA0077.1	MA0077.1	0.0928
MA0078.1	MA0078.1	0.825
MA0079.2	MA0079.2	0.331
MA0080.2	MA0080.2	5.93183e-14
MA0081.1	MA0081.1	0.0101
MA0083.1	MA0083.1	0.122
MA0084.1	MA0084.1	0.157
MA0087.1	MA0087.1	0.279
MA0088.1	MA0088.1	0.811
MA0090.1	MA0090.1	0.495
MA0091.1	MA0091.1	0.0523
MA0092.1	MA0092.1	0.743
MA0093.1	MA0093.1	0.461
MA0099.2	MA0099.2	0.0877
MA0100.1	MA0100.1	0.304
MA0101.1	MA0101.1	0.253
MA0102.2	MA0102.2	0.0275
MA0103.1	MA0103.1	0.896
MA0104.2	MA0104.2	0.334
MA0105.1	MA0105.1	5.57347e-4
MA0106.1	MA0106.1	0.864
MA0107.1	MA0107.1	0.0904
MA0108.2	MA0108.2	0.0282
MA0111.1	MA0111.1	0.558
MA0112.2	MA0112.2	6.03827e-6
MA0113.1	MA0113.1	0.589
MA0114.1	MA0114.1	0.95
MA0115.1	MA0115.1	0.697
MA0116.1	MA0116.1	1.64626e-4
MA0117.1	MA0117.1	0.602
MA0119.1	MA0119.1	0.222
MA0122.1	MA0122.1	0.412
MA0124.1	MA0124.1	0.866
MA0125.1	MA0125.1	0.0293
MA0131.1	MA0131.1	0.395
MA0135.1	MA0135.1	0.718
MA0136.1	MA0136.1	3.64724e-14
MA0137.2	MA0137.2	0.588
MA0138.2	MA0138.2	0.572
MA0139.1	MA0139.1	0.617
MA0140.1	MA0140.1	5.67878e-17
MA0141.1	MA0141.1	0.316
MA0142.1	MA0142.1	0.00543
MA0143.1	MA0143.1	0.496
MA0144.1	MA0144.1	0.728
MA0145.1	MA0145.1	0.152
MA0146.1	MA0146.1	0.068
MA0147.1	MA0147.1	0.448
MA0148.1	MA0148.1	0.324
MA0149.1	MA0149.1	0.4
MA0150.1	MA0150.1	0.00242
MA0152.1	MA0152.1	0.269
MA0153.1	MA0153.1	1.60913e-7
MA0154.1	MA0154.1	9.7804e-4
MA0155.1	MA0155.1	0.484
MA0156.1	MA0156.1	6.87285e-8
MA0157.1	MA0157.1	0.931
MA0159.1	MA0159.1	0.00576
MA0160.1	MA0160.1	0.131
MA0162.1	MA0162.1	0.182
MA0163.1	MA0163.1	5.58469e-5
MA0164.1	MA0164.1	0.726
MA0258.1	MA0258.1	0.00191
MA0259.1	MA0259.1	0.26

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10483

Novel motif	Logo	P-value
1	1	0.223
10	10	0.116
100	100	0.789
101	101	0.405
102	102	0.321
103	103	0.258
104	104	0.989
105	105	0.324
106	106	0.0874
107	107	0.362
108	108	0.835
109	109	0.0404
11	11	0.132
110	110	0.115
111	111	0.197
112	112	0.117
113	113	0.667
114	114	0.14
115	115	0.91
116	116	0.281
117	117	0.0243
118	118	0.382
119	119	0.0711
12	12	0.401
120	120	0.646
121	121	0.341
122	122	0.753
123	123	0.97
124	124	0.89
125	125	0.0369
126	126	0.311
127	127	0.156
128	128	0.123
129	129	0.171
13	13	0.0809
130	130	0.589
131	131	0.919
132	132	0.711
133	133	0.141
134	134	0.335
135	135	0.973
136	136	0.245
137	137	0.061
138	138	0.444
139	139	0.1
14	14	0.306
140	140	0.265
141	141	0.47
142	142	0.893
143	143	0.129
144	144	0.475
145	145	0.0932
146	146	0.612
147	147	0.971
148	148	0.189
149	149	0.175
15	15	0.0192
150	150	0.305
151	151	0.0619
152	152	0.219
153	153	0.846
154	154	0.869
155	155	0.582
156	156	0.871
157	157	0.911
158	158	0.0931
159	159	0.995
160	160	0.573
161	161	0.257
162	162	0.587
163	163	0.704
164	164	0.0481
165	165	0.0334
166	166	0.418
167	167	0.762
168	168	0.395
169	169	9.97624e-4
17	17	0.242
18	18	0.205
19	19	0.174
2	2	0.746
20	20	0.614
21	21	0.0786
22	22	0.25
23	23	0.381
24	24	0.275
25	25	0.261
26	26	0.0489
27	27	0.45
28	28	0.415
29	29	0.111
3	3	0.145
30	30	0.897
31	31	0.395
32	32	0.0926
33	33	0.361
34	34	0.347
35	35	0.439
36	36	0.146
37	37	0.117
38	38	0.368
39	39	0.911
4	4	0.983
40	40	0.103
41	41	0.344
42	42	0.313
43	43	0.136
44	44	0.318
45	45	0.444
46	46	0.177
47	47	0.181
48	48	0.256
49	49	0.192
5	5	0.0773
50	50	0.92
51	51	0.717
52	52	0.479
53	53	0.618
54	54	0.719
55	55	0.0598
56	56	0.257
57	57	0.405
58	58	0.294
59	59	0.0213
6	6	0.678
60	60	0.157
61	61	0.366
62	62	0.0742
63	63	0.313
64	64	0.599
65	65	0.196
66	66	0.472
67	67	0.21
68	68	0.658
69	69	0.119
7	7	0.0623
70	70	0.0603
71	71	0.0552
72	72	0.478
73	73	0.0875
74	74	0.523
75	75	0.119
76	76	0.833
77	77	0.427
78	78	0.0127
79	79	0.512
8	8	0.0349
80	80	0.0139
81	81	0.318
82	82	0.248
83	83	0.237
84	84	0.649
85	85	0.0456
86	86	0.313
87	87	0.187
88	88	0.807
89	89	0.201
9	9	0.277
90	90	0.79
91	91	0.269
92	92	0.43
93	93	0.281
94	94	0.0471
95	95	0.0656
96	96	0.318
97	97	0.961
98	98	0.136
99	99	0.576

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10483

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011464 mouse bone- os femoris - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000981 (femur)
0001474 (bone element)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0000026 (appendage)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0002472 (stylopod)
0008784 (lower limb segment)
0001062 (anatomical entity)
0000480 (anatomical group)
0006058 (multi-limb segment region)
0003608 (hindlimb long bone)
0003826 (upper leg bone)
0008202 (bone of hip region)
0000075 (subdivision of skeletal system)
0004381 (skeleton of limb)
0007273 (pelvic appendage skeleton)
0004765 (skeletal element)
0010912 (subdivision of skeleton)
0004708 (paired limb/fin)
0002101 (limb)
0004709 (pelvic appendage)
0002513 (endochondral bone)
0004375 (bone of free limb or fin)
0010740 (bone of appendage girdle complex)
0002529 (limb segment)
0010363 (endochondral element)
0010538 (paired limb/fin segment)
0002428 (limb bone)
0010742 (bone of pelvic complex)
0002495 (long bone)
0003464 (hindlimb bone)
0003606 (limb long bone)
0005893 (leg bone)
0010317 (germ layer / neural crest derived structure)
0010712 (limb skeleton subdivision)
0010758 (subdivision of organism along appendicular axis)
0010707 (appendage girdle complex)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0000978 (leg)
0002103 (hindlimb)
0000376 (hindlimb stylopod)
0001441 (hindlimb skeleton)
0011249 (appendicular skeletal system)
0000154 (posterior region of body)
0010709 (pelvic complex)
0002091 (appendicular skeleton)
0004288 (skeleton)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011464 (mouse bone- os femoris - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0005866 (pre-cartilage condensation)
UBERON:0006234 (femur pre-cartilage condensation)
UBERON:0010316 (germ layer / neural crest)
UBERON:0010882 (limb bone pre-cartilage condensation)
UBERON:0010886 (hindlimb bone pre-cartilage condensation)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00006018
+|accession_numbers=CAGE;DRX008936;DRR009810;DRZ001235;DRZ002618;DRZ012585;DRZ013968
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000981,UBERON:0001474,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0002472,UBERON:0008784,UBERON:0001062,UBERON:0000480,UBERON:0006058,UBERON:0003608,UBERON:0003826,UBERON:0008202,UBERON:0000075,UBERON:0004381,UBERON:0007273,UBERON:0004765,UBERON:0010912,UBERON:0004708,UBERON:0002101,UBERON:0004709,UBERON:0002513,UBERON:0004375,UBERON:0010740,UBERON:0002529,UBERON:0010363,UBERON:0010538,UBERON:0002428,UBERON:0010742,UBERON:0002495,UBERON:0003464,UBERON:0003606,UBERON:0005893,UBERON:0010317,UBERON:0010712,UBERON:0010758,UBERON:0010707,UBERON:0002204,UBERON:0001434,UBERON:0000978,UBERON:0002103,UBERON:0000376,UBERON:0001441,UBERON:0011249,UBERON:0000154,UBERON:0010709,UBERON:0002091,UBERON:0004288
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:87425854..87425891,+!p1@Klf1!1.96!89.35!Klf1;;chr15:103085660..103085681,-!p1@Nfe2!1.92!121.19!Nfe2;;chr7:122989594..122989626,-!p1@Sox6!1.80!61.92!Sox6;;chr2:28477452..28477483,-!p1@Gfi1b!1.78!72.54!Gfi1b;;chrX:7544943..7545001,-!p1@Gata1!1.73!52.19!Gata1;;chr13:83643159..83643226,+!p3@Mef2c!1.60!38.92!Mef2c;;chr15:103085690..103085710,-!p3@Nfe2!1.57!38.92!Nfe2;;chr11:11586218..11586285,+!p1@Ikzf1!1.55!107.04!Ikzf1;;chr4:114732112..114732158,+!p1@Tal1!1.53!69.88!Tal1;;chr11:11584970..11585030,+!p2@Ikzf1!1.52!45.12!Ikzf1;;chr7:51787434..51787448,-!p1@Spib!1.52!45.12!Spib;;chr9:51021788..51021802,+!p1@Pou2af1!1.52!38.04!Pou2af1;;chr15:103085802..103085817,-!p4@Nfe2!1.51!38.92!Nfe2;;chr11:16908650..16908690,-!p1@Plek!1.49!175.15!Plek;;chr7:119885539..119885574,+!p3@Tead1!1.47!28.31!Tead1;;chr7:122989632..122989668,-!p2@Sox6!1.38!23.00!Sox6;;chr4:87452200..87452229,-!p2@Mllt3!1.37!46.88!Mllt3;;chr13:30841099..30841116,+!p1@Irf4!1.37!34.50!Irf4;;chr9:96159147..96159204,+!p2@Tfdp2!1.35!39.81!Tfdp2;;chr15:103082088..103082136,-!p2@Nfe2!1.35!21.23!Nfe2;;chr4:44723559..44723593,-!p1@Pax5!1.35!21.23!Pax5;;chr6:86619104..86619119,-!p1@Mxd1!1.32!157.46!Mxd1;;chr16:92826249..92826325,-!p1@Runx1!1.32!48.65!Runx1;;chr1:38721792..38721845,-!p1@Aff3!1.32!24.77!Aff3;;chr2:120365588..120365602,-!p2@Zfp106!1.31!31.85!Zfp106;;chr4:135728581..135728668,+!p1@E2f2!1.30!87.58!E2f2;;chr8:87225670..87225697,+!p2@Lyl1!1.28!51.31!Lyl1;;chr2:90936901..90936945,+!p1@Sfpi1!1.26!89.35!Sfpi1;;chr4:63064364..63064384,-!p1@Akna!1.26!49.54!Akna;;chr4:135728181..135728203,+!p2@E2f2!1.25!22.12!E2f2;;chr2:90936947..90936977,+!p2@Sfpi1!1.24!31.85!Sfpi1;;chr11:100683839..100683890,-!p2@Stat5b!1.22!36.27!Stat5b;;chr8:87225329..87225396,+!p1@Lyl1!1.19!53.96!Lyl1;;chr9:96159225..96159249,+!p5@Tfdp2!1.19!15.92!Tfdp2;;chr4:87452180..87452196,-!p3@Mllt3!1.18!27.42!Mllt3;;chr3:99057677..99057730,+!p2@Tbx15!1.18!14.15!Tbx15;;chr10:88145766..88145770,-!p1@Spic!1.16!17.69!Spic;;chr5:65203575..65203589,+!p11@Klf3!1.15!15.92!Klf3;;chr6:99216488..99216534,-!p2@Foxp1!1.14!36.27!Foxp1;;chr9:96159116..96159130,+!p6@Tfdp2!1.14!15.92!Tfdp2;;chr2:90936978..90937023,+!p3@Sfpi1!1.13!23.88!Sfpi1;;chr7:148452314..148452329,-!p1@Irf7!1.11!82.27!Irf7;;chr2:173044380..173044432,-!p1@Zbp1!1.07!25.65!Zbp1;;chr1:52065454..52065495,+!p1@Stat4!1.07!17.69!Stat4;;chr4:135728473..135728494,+!p5@E2f2!1.07!10.62!E2f2;;chr8:123260252..123260264,+!p1@Irf8!1.05!73.42!Irf8;;chr2:90922554..90922575,+!p4@Sfpi1!1.05!18.58!Sfpi1;;chr10:79884592..79884621,-!p5@Tcf3!1.03!9.73!Tcf3;;chr11:98407264..98407295,-!p1@Ikzf3!1.03!9.73!Ikzf3;;chr15:102197405..102197454,-!p1@Sp7!1.03!9.73!Sp7;;chr17:44951553..44951586,-!p2@Runx2!1.02!10.62!Runx2;;chr12:74147689..74147711,-!p1@Six1!0.99!19.46!Six1;;chr3:99057269..99057306,+!p1@Tbx15!0.99!10.62!Tbx15;;chr4:44723520..44723544,-!p2@Pax5!0.99!8.85!Pax5;;chr4:44723633..44723646,-!p3@Pax5!0.99!8.85!Pax5;;chr6:86619130..86619158,-!p2@Mxd1!0.97!123.85!Mxd1;;chr10:20880731..20880775,-!p2@Myb!0.97!17.69!Myb;;chr10:20880629..20880683,-!p1@Myb!0.96!23.88!Myb;;chr8:87225702..87225726,+!p3@Lyl1!0.96!16.81!Lyl1;;chr19:37509324..37509337,+!p1@Hhex!0.95!57.50!Hhex;;chr5:20361092..20361119,-!p4@Phtf2!0.95!7.96!Phtf2;;chr18:80904854..80904919,-!p2@Nfatc1!0.94!94.65!Nfatc1;;chr11:120491440..120491474,-!p3@Mafg!0.94!11.50!Mafg;;chr6:29476690..29476724,+!p1@Irf5!0.93!36.27!Irf5;;chr4:32325445..32325468,+!p4@Bach2!0.92!10.62!Bach2;;chr1:87546583..87546595,+!p1@Sp100!0.92!10.62!Sp100;;chr3:135271185..135271254,-!p4@Nfkb1!0.91!13.27!Nfkb1;;chr10:106931775..106931798,-!p1@Myf6!0.91!7.08!Myf6;;chr13:83643136..83643158,+!p7@Mef2c!0.91!7.08!Mef2c;;chr17:44872561..44872615,-!p1@Runx2!0.89!15.92!Runx2;;chr11:11585912..11585950,+!p6@Ikzf1!0.89!8.85!Ikzf1;;chr1:87546602..87546617,+!p2@Sp100!0.88!7.96!Sp100;;chr8:124806017..124806040,+!p2@Zfpm1!0.87!74.31!Zfpm1;;chr2:166868994..166869023,-!p7@Znfx1!0.86!6.19!Znfx1;;chr2:90936867..90936874,+!p7@Sfpi1!0.86!6.19!Sfpi1;;chr10:20880698..20880717,-!p3@Myb!0.85!9.73!Myb;;chr2:173044357..173044377,-!p2@Zbp1!0.85!8.85!Zbp1;;chr4:114730254..114730276,+!p2@Tal1!0.85!7.96!Tal1;;chr7:56136362..56136400,-!p1@E2f8!0.84!40.69!E2f8;;chr1:52065508..52065522,+!p2@Stat4!0.84!7.08!Stat4;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!0.84!7.08!Ncoa4;;chr5:65203599..65203617,+!p8@Klf3!0.83!9.73!Klf3;;chr8:124806048..124806094,+!p1@Zfpm1!0.82!54.85!Zfpm1;;chr9:32348943..32349001,-!p1@Fli1!0.82!48.65!Fli1;;chr15:103085821..103085828,-!p6@Nfe2!0.80!5.31!Nfe2;;chr4:87452236..87452249,-!p9@Mllt3!0.80!5.31!Mllt3;;chr16:92826232..92826245,-!p4@Runx1!0.80!5.31!Runx1;;chr5:104121453..104121479,+!p4@Aff1!0.79!25.65!Aff1;;chr5:104183477..104183548,+!p6@Aff1!0.79!10.62!Aff1;;chr11:23670953..23671028,-!p1@Rel!0.78!30.96!Rel;;chr19:53384910..53384937,+!p3@Mxi1!0.78!15.04!Mxi1;;chr13:59923965..59924003,-!p2@Zcchc6!0.78!6.19!Zcchc6;;chr18:80909801..80909819,-!p1@Nfatc1!0.77!31.85!Nfatc1;;chr14:79915425..79915501,+!p1@Elf1!0.76!46.88!Elf1;;chr5:24108047..24108106,-!p3@Smarcd3!0.76!8.85!Smarcd3;;chr6:6831950..6831985,-!p2@Dlx5!0.76!5.31!Dlx5;;chr7:87170879..87170914,+!p2@Zfp710!0.75!11.50!Zfp710;;chr11:11585678..11585745,+!p5@Ikzf1!0.75!7.08!Ikzf1;;chr10:80598968..80599012,+!p5@Zbtb7a!0.75!6.19!Zbtb7a;;chr7:25917492..25917512,-!p1@Pou2f2!0.74!7.96!Pou2f2;;chr17:44873393..44873418,-!p4@Runx2!0.73!7.96!Runx2;;chr4:63064395..63064410,-!p2@Akna!0.73!7.96!Akna;;chr5:125538703..125538715,-!p5@Ncor2!0.73!5.31!Ncor2;;chr7:122989676..122989687,-!p8@Sox6!0.73!4.42!Sox6;;chr5:108155007..108155034,-!p1@Gfi1!0.73!4.42!Gfi1;;chr6:29479308..29479325,+!p3@Irf5!0.73!4.42!Irf5;;chr4:87452167..87452178,-!p8@Mllt3!0.73!4.42!Mllt3;;chr7:53631837..53631850,+!p1@Myod1!0.73!4.42!Myod1;;chr9:96159210..96159221,+!p10@Tfdp2!0.73!4.42!Tfdp2;;chr9:63514630..63514652,-!p8@Smad3!0.73!4.42!Smad3;;chr17:44951431..44951445,-!p3@Runx2!0.73!4.42!Runx2;;chr11:90249521..90249551,-!p3@Hlf!0.73!4.42!Hlf;;chr11:98407340..98407359,-!p4@Ikzf3!0.73!4.42!Ikzf3;;chr11:96976641..96976646,-!p1@Tbx21!0.73!4.42!Tbx21;;chr13:37870307..37870337,+!p5@Rreb1!0.72!10.62!Rreb1;;chr7:56137011..56137041,-!p2@E2f8!0.72!8.85!E2f8;;chr13:64254572..64254585,-!p6@Zfp367!0.72!6.19!Zfp367;;chr16:15887371..15887385,+!p1@Cebpd!0.70!155.69!Cebpd;;chr2:160192793..160192809,-!p1@Mafb!0.70!69.00!Mafb;;chr10:41995430..41995458,-!p3@Foxo3!0.70!11.50!Foxo3;;chr11:44430877..44430899,+!p6@Ebf1!0.70!5.31!Ebf1;;chr2:162880418..162880429,+!p4@Mybl2!0.70!5.31!Mybl2;;chr5:65213356..65213412,+!p6@Klf3!0.69!8.85!Klf3;;chr7:20162663..20162678,+!p1@Zfp296!0.69!5.31!Zfp296;;chr4:134708451..134708469,+!p1@Runx3!0.67!7.08!Runx3;;chr7:31206743..31206761,+!p1@Nfkbid!0.67!5.31!Nfkbid;;chr6:6832076..6832092,-!p1@Dlx5!0.67!4.42!Dlx5;;chr2:162880387..162880413,+!p1@Mybl2!0.66!25.65!Mybl2;;chr1:52176406..52176433,+!p2@Stat1!0.66!9.73!Stat1;;chr17:45692676..45692695,+!p2@Nfkbie!0.66!7.96!Nfkbie;;chr17:14011485..14011507,+!p2@Mllt4!0.66!3.54!Mllt4;;chr16:25684232..25684285,+!p2@Trp63!0.66!3.54!Trp63;;chr4:114729957..114730012,+!p3@Tal1!0.66!3.54!Tal1;;chr11:98407234..98407259,-!p2@Ikzf3!0.66!3.54!Ikzf3;;chr7:119885584..119885594,+!p8@Tead1!0.66!3.54!Tead1;;chr9:63514609..63514620,-!p10@Smad3!0.66!3.54!Smad3;;chr15:102797288..102797302,+!p1@Hoxc10!0.66!3.54!Hoxc10;;chr14:32979060..32979091,+!p4@Gm6768,p4@Ncoa4!0.66!3.54!Ncoa4;;chr6:131338435..131338482,-!p1@Csda!0.65!383.04!Csda;;chr1:36364590..36364608,+!p1@Arid5a!0.65!41.58!Arid5a;;chr11:44430812..44430838,+!p1@Ebf1!0.65!39.81!Ebf1;;chr5:92391466..92391471,+!p2@Thap6!0.65!5.31!Thap6;;chr11:96838974..96839007,-!p1@Sp2!0.63!60.15!Sp2;;chrX:48559029..48559051,-!p7@Mbnl3!0.63!4.42!Mbnl3;;chr5:104183219..104183236,+!p2@Aff1!0.62!25.65!Aff1;;chr11:23980664..23980706,+!p2@Bcl11a!0.62!15.92!Bcl11a;;chr14:47896467..47896523,-!p1@Wdhd1!0.61!45.12!Wdhd1;;chrX:45807329..45807370,-!p1@Elf4!0.61!25.65!Elf4;;chr10:82226833..82226864,-!p3@Nfyb!0.61!18.58!Nfyb;;chr17:45692642..45692663,+!p1@Nfkbie!0.61!11.50!Nfkbie;;chr4:135728282..135728310,+!p4@E2f2!0.61!3.54!E2f2;;chr12:78063057..78063070,-!p3@Max!0.60!7.08!Max;;chr11:23977565..23977612,+!p5@Bcl11a!0.59!7.08!Bcl11a;;chr2:90936886..90936898,+!p5@Sfpi1!0.59!3.54!Sfpi1;;chr13:55431084..55431137,-!p1@Mxd3!0.57!25.65!Mxd3;;chr7:87171047..87171078,+!p1@Zfp710!0.57!10.62!Zfp710;;chr7:71083729..71083742,-!p4@Klf13!0.57!5.31!Klf13;;chr11:96690797..96690813,-!p1@Nfe2l1!0.56!63.69!Nfe2l1;;chr1:52176315..52176343,+!p1@Stat1!0.56!47.77!Stat1;;chr11:98636531..98636559,-!p1@Nr1d1!0.56!18.58!Nr1d1;;chrX:48559079..48559108,-!p2@Mbnl3!0.56!7.08!Mbnl3;;chr6:39068181..39068206,-!p3@Parp12!0.56!6.19!Parp12;;chr6:83301243..83301258,+!p2@Bola3!0.56!2.65!Bola3;;chr6:29479277..29479296,+!p2@Irf5!0.56!2.65!Irf5;;chr6:99385340..99385362,-!p11@Foxp1!0.56!2.65!Foxp1;;chr7:53631818..53631829,+!p2@Myod1!0.56!2.65!Myod1;;chr3:89191004..89191022,-!p4@Zbtb7b!0.56!2.65!Zbtb7b;;chr3:135257370..135257389,-!p9@Nfkb1!0.56!2.65!Nfkb1;;chr3:66785181..66785199,-!p2@Shox2!0.56!2.65!Shox2;;chr4:44723835..44723849,-!p4@Pax5!0.56!2.65!Pax5;;chr4:114730015..114730042,+!p7@Tal1!0.56!2.65!Tal1;;chr3:99057256..99057268,+!p3@Tbx15!0.56!2.65!Tbx15;;chr1:57028125..57028149,-!p2@Satb2!0.56!2.65!Satb2;;chr1:87546619..87546627,+!p3@Sp100!0.56!2.65!Sp100;;chr1:167865149..167865167,-!p3@Pou2f1!0.56!2.65!Pou2f1;;chr2:28477422..28477433,-!p2@Gfi1b!0.56!2.65!Gfi1b;;chr1:64579145..64579168,+!p6@Creb1!0.56!2.65!Creb1;;chr11:98822047..98822072,+!p9@Rara!0.56!2.65!Rara;;chr11:120491830..120491851,-!p10@Mafg!0.56!2.65!Mafg;;chr10:5734473..5734489,-!p5@Esr1!0.56!2.65!Esr1;;chr11:98822081..98822092,+!p14@Rara!0.56!2.65!Rara;;chr11:98407448..98407455,-!p12@Ikzf3!0.56!2.65!Ikzf3;;chr16:92826180..92826191,-!p5@Runx1!0.56!2.65!Runx1;;chr17:47906140..47906150,+!p6@Tfeb!0.56!2.65!Tfeb;;chr19:37511111..37511115,+!p2@Hhex!0.56!2.65!Hhex;;chr17:44872524..44872537,-!p9@Runx2!0.56!2.65!Runx2;;chr15:102196745..102196769,-!p2@Sp7!0.56!2.65!Sp7;;chr15:102797170..102797182,+!p3@Hoxc10!0.56!2.65!Hoxc10;;chr15:103085864..103085876,-!p5@Nfe2!0.56!2.65!Nfe2;;chr14:55330957..55330971,-!p2@Cebpe!0.56!2.65!Cebpe;;chr15:75578748..75578752,-!p1@Mafa!0.56!2.65!Mafa;;chr14:55331167..55331204,-!p3@Cebpe!0.56!2.65!Cebpe;;chr12:34642510..34642530,+!p1@Twist1!0.55!9.73!Twist1;;chr5:138187583..138187602,+!p6@Tsc22d4!0.55!5.31!Tsc22d4;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.55!4.42!Ncoa4;;chr4:32325955..32325971,+!p3@Bach2!0.55!3.54!Bach2;;chr17:27693922..27693934,+!p10@Hmga1-rs1,p11@Hmga1!0.55!3.54!Hmga1;;chr5:65194752..65194769,+!p1@Klf3!0.54!105.27!Klf3;;chr2:162880327..162880385,+!p2@Mybl2!0.54!20.35!Mybl2;;chr5:104121391..104121450,+!p3@Aff1!0.54!15.92!Aff1;;chr6:88143711..88143717,+!p2@Gata2!0.54!4.42!Gata2;;chr11:101413151..101413207,-!p1@Brca1!0.53!29.19!Brca1;;chr17:33766353..33766393,+!p2@Zfp414!0.53!7.96!Zfp414;;chr11:98821858..98821907,+!p6@Rara!0.53!4.42!Rara;;chr10:5734525..5734569,-!p3@Esr1!0.53!4.42!Esr1;;chr6:88148650..88148669,+!p1@Gata2!0.52!24.77!Gata2;;chr5:65194720..65194738,+!p2@Klf3!0.52!15.92!Klf3;;chr9:21420610..21420621,+!p5@Smarca4!0.52!8.85!Smarca4;;chr1:186556410..186556424,-!p1@Hlx!0.52!8.85!Hlx;;chr12:77470718..77470752,-!p4@Zbtb25!0.52!3.54!Zbtb25;;chr7:144506077..144506128,-!p1@Ebf3!0.51!6.19!Ebf3;;chr17:47278081..47278103,+!p1@Trerf1!0.51!6.19!Trerf1;;chr8:87324292..87324303,-!p4@Nfix!0.51!6.19!Nfix;;chr13:112476264..112476282,+!p3@Mier3!0.51!3.54!Mier3;;chr4:32325688..32325777,+!p1@Bach2!0.50!24.77!Bach2;;chr15:103170516..103170531,-!p2@Zfp385a!0.50!6.19!Zfp385a;;chr1:133904862..133904893,+!p6@Elk4!0.50!5.31!Elk4;;chr6:16848395..16848416,-!p2@Tfec!0.50!2.65!Tfec;;chr7:71083748..71083819,-!p1@Klf13!0.49!93.77!Klf13;;chr13:83663902..83663927,+!p1@Mef2c!0.49!68.12!Mef2c;;chr10:30522881..30522960,-!p1@Ncoa7!0.49!33.62!Ncoa7;;chr18:39650303..39650371,-!p1@Nr3c1!0.49!31.85!Nr3c1;;chr5:34163023..34163090,+!p2@Whsc1!0.49!17.69!Whsc1;;chr15:97738692..97738747,-!p1@Vdr!0.49!15.04!Vdr;;chr5:135582751..135582788,+!p1@Mlxipl!0.49!10.62!Mlxipl;;chr5:32438894..32438908,+!p2@Fosl2!0.49!5.31!Fosl2;;chr14:79915502..79915514,+!p4@Elf1!0.49!3.54!Elf1;;chr11:11590140..11590187,+!p3@Ikzf1!0.49!2.65!Ikzf1;;chr14:99697871..99697934,+!p1@Klf5!0.48!53.96!Klf5;;chr12:86940338..86940357,+!p1@Jdp2!0.48!26.54!Jdp2;;chr10:79389784..79389833,+!p1@Arid3a!0.48!14.15!Arid3a;;chr10:127707562..127707597,+!p2@Stat2!0.48!13.27!Stat2;;chr16:42875952..42875974,+!p4@Zbtb20!0.48!9.73!Zbtb20;;chr8:125778192..125778217,+!p2@Zfp276!0.48!7.08!Zfp276;;chr8:124984566..124984595,-!p1@Snai3!0.48!3.54!Snai3;;chr18:74375754..74375763,+!p4@Cxxc1!0.48!2.65!Cxxc1;;chr3:135354375..135354381,-!p10@Nfkb1!0.48!2.65!Nfkb1;;chr7:144505957..144505972,-!p2@Ebf3!0.48!2.65!Ebf3;;chr17:88840082..88840127,+!p1@Foxn2!0.47!18.58!Foxn2;;chr17:31701800..31701818,+!p2@Pknox1!0.47!6.19!Pknox1;;chr2:30700881..30700916,+!p1@Prrx2!0.47!4.42!Prrx2;;chrX:7339674..7339688,+!p6@Tfe3!0.47!3.54!Tfe3;;chr11:23977742..23977794,+!p6@Bcl11a!0.47!2.65!Bcl11a;;chr7:123177377..123177409,-!p7@Sox6!0.47!2.65!Sox6;;chr5:65213459..65213485,+!p12@Klf3!0.47!2.65!Klf3;;chr8:74842952..74842970,+!p1@Klf2!0.46!176.04!Klf2;;chr8:107694628..107694659,+!p1@Cbfb!0.46!23.00!Cbfb;;chr5:125538737..125538781,-!p2@Ncor2!0.46!8.85!Ncor2;;chr12:87027598..87027652,+!p1@Batf!0.46!5.31!Batf;;chr7:56136974..56136989,-!p4@E2f8!0.46!3.54!E2f8;;chr18:70727922..70728052,+!p1@Mbd2!0.45!92.88!Mbd2;;chr11:106134241..106134320,-!p2@Smarcd2!0.45!29.19!Smarcd2;;chr3:95238432..95238455,+!p2@Arnt!0.45!14.15!Arnt;;chr12:85534957..85535017,-!p2@C130039O16Rik!0.45!12.38!C130039O16Rik;;chr2:72818978..72818997,-!p4@Sp3!0.45!10.62!Sp3;;chr15:100058289..100058300,+!p3@Atf1!0.45!6.19!Atf1;;chr4:119406412..119406439,+!p2@Hivep3!0.45!4.42!Hivep3;;chr5:104183237..104183248,+!p7@Aff1!0.45!3.54!Aff1;;chr12:100802113..100802127,-!p5@Foxn3!0.45!2.65!Foxn3;;chr17:44873258..44873281,-!p5@Runx2!0.45!2.65!Runx2;;chr9:32503590..32503680,+!p1@Ets1!0.44!91.11!Ets1;;chr16:91044718..91044765,-!p2@Gcfc1!0.44!43.35!Gcfc1;;chr5:104183173..104183207,+!p1@Aff1!0.44!32.73!Aff1;;chr7:71083428..71083518,-!p3@Klf13!0.44!18.58!Klf13;;chr17:25152743..25152766,-!p2@Cramp1l!0.44!9.73!Cramp1l;;chr4:124805061..124805087,-!p1@Zc3h12a!0.44!7.08!Zc3h12a;;chr8:83262929..83262957,-!p1@Smarca5!0.44!6.19!Smarca5;;chr9:96159133..96159145,+!p9@Tfdp2!0.44!1.77!Tfdp2;;chr17:51972400..51972428,-!p11@Satb1!0.44!1.77!Satb1;;chr16:14705668..14705683,+!p3@Snai2!0.44!1.77!Snai2;;chr16:94085471..94085495,+!p1@Sim2!0.44!1.77!Sim2;;chr19:37511197..37511206,+!p3@Hhex!0.44!1.77!Hhex;;chr15:103083928..103083932,-!p10@Nfe2!0.44!1.77!Nfe2;;chr15:102839948..102839975,+!p3@Hoxc6!0.44!1.77!Hoxc6;;chr14:55331234..55331245,-!p4@Cebpe!0.44!1.77!Cebpe;;chr14:55330976..55330990,-!p1@Cebpe!0.44!1.77!Cebpe;;chrX:7544928..7544938,-!p2@Gata1!0.44!1.77!Gata1;;chrX:95345005..95345053,+!p1@Ar!0.44!1.77!Ar;;chrX:7156792..7156811,+!p1@Foxp3!0.44!1.77!Foxp3;;chr1:87495371..87495397,-!p1@Sp110!0.44!1.77!Sp110;;chr1:87546572..87546579,+!p4@Sp100!0.44!1.77!Sp100;;chr2:166885947..166885956,-!p13@Znfx1!0.44!1.77!Znfx1;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bd6;;chr15:75672337..75672362,-!p1@Zc3h3!0.16!14.15!Zc3h3;;chr3:54611674..54611690,-!p2@Rfxap!0.16!8.85!Rfxap;;chr3:32409460..32409483,+!p2@Zfp639!0.16!5.31!Zfp639;;chr4:108131994..108132056,+!p2@Zcchc11!0.16!3.54!Zcchc11;;chr3:152059326..152059358,+!p3@Gm8261,p3@Zzz3!0.16!3.54!Zzz3;;chr14:79881330..79881415,+!p3@Elf1!0.16!3.54!Elf1;;chr12:85657780..85657815,+!p2@Zfp410!0.16!2.65!Zfp410;;chrX:7339829..7339855,+!p3@Tfe3!0.16!2.65!Tfe3;;chr7:50568466..50568486,-!p2@Zfp715!0.16!2.65!Zfp715;;chrX:103123886..103123922,-!p3@Atrx!0.16!2.65!Atrx;;chr13:5860872..5860883,+!p3@Klf6!0.16!1.77!Klf6;;chr13:44825008..44825066,+!p5@Jarid2!0.16!1.77!Jarid2;;chr7:148513574..148513593,-!p5@Deaf1!0.16!1.77!Deaf1;;chr6:47545052..47545064,-!p2@Ezh2!0.16!1.77!Ezh2;;chr18:3337339..3337397,-!p5@Crem!0.16!1.77!Crem;;chr11:85646341..85646352,+!p3@Tbx2!0.16!1.77!Tbx2;;chr10:92773708..92773734,-!p3@Elk3!0.16!1.77!Elk3;;chr6:99471147..99471161,-!p9@Foxp1!0.16!0.88!Foxp1;;chr6:72850124..72850210,-!p7@Kcmf1!0.16!0.88!Kcmf1;;chr8:81923375..81923380,-!p6@Smad1!0.16!0.88!Smad1;;chr8:94325486..94325510,-!p4@Irx3!0.16!0.88!Irx3;;chr7:5003069..5003078,+!p5@Zfp580!0.16!0.88!Zfp580;;chr1:4486505..4486527,-!p5@Sox17!0.16!0.88!Sox17;;chr1:64168228..64168250,-!p7@Klf7!0.16!0.88!Klf7;;chr16:43619156..43619171,+!p16@Zbtb20!0.16!0.88!Zbtb20;;chr18:69504229..69504240,+!p16@Tcf4!0.16!0.88!Tcf4;;chr19:23216166..23216191,+!p6@Klf9!0.16!0.88!Klf9;;chr9:20757246..20757278,-!p1@Dnmt1!0.15!36.27!Dnmt1;;chr7:134170235..134170294,-!p1@Maz!0.15!35.38!Maz;;chr5:38611720..38611799,+!p1@Lyar!0.15!33.62!Lyar;;chr17:34168732..34168766,+!p1@Rxrb!0.15!33.62!Rxrb;;chr5:111082367..111082441,-!p1@Noc4l!0.15!29.19!Noc4l;;chr15:100058266..100058287,+!p1@Atf1!0.15!19.46!Atf1;;chr15:102236700..102236764,+!p1@Sp1!0.15!18.58!Sp1;;chr14:79880971..79880992,+!p2@Elf1!0.15!15.92!Elf1;;chr15:50721588..50721610,-!p1@Trps1!0.15!12.38!Trps1;;chr6:131338400..131338415,-!p3@Csda!0.15!12.38!Csda;;chr14:31832345..31832364,+!p2@Pbrm1!0.15!10.62!Pbrm1;;chr2:37278415..37278478,-!p1@Rc3h2!0.15!10.62!Rc3h2;;chr7:13466514..13466553,+!p1@Zfp128!0.15!5.31!Zfp128;;chr9:96620228..96620308,-!p3@Zbtb38!0.15!5.31!Zbtb38;;chr17:46693078..46693097,-!p3@Srf!0.15!4.42!Srf;;chr19:5637501..5637517,+!p4@Rela!0.15!4.42!Rela;;chr15:25914114..25914128,+!p2@Zfp622!0.15!4.42!Zfp622;;chr17:84587167..84587239,-!p2@Zfp36l2!0.15!3.54!Zfp36l2;;chr5:107125838..107125858,-!p2@Zfp644!0.15!3.54!Zfp644;;chr3:89197551..89197606,-!p2@Zbtb7b!0.15!3.54!Zbtb7b;;chr2:77357622..77357704,-!p1@Zfp385b!0.15!2.65!Zfp385b;;chr10:127080141..127080160,+!p2@Stat6!0.15!2.65!Stat6;;chr6:133985971..133985991,+!p6@Etv6!0.15!2.65!Etv6;;chr6:47827570..47827593,+!p3@Zfp282!0.15!2.65!Zfp282;;chr2:181100223..181100237,+!p4@Zgpat!0.15!2.65!Zgpat;;chr1:186556323..186556370,-!p2@Hlx!0.15!2.65!Hlx;;chr2:37286328..37286341,-!p3@Zbtb6!0.15!1.77!Zbtb6;;chr3:135354349..135354371,-!p6@Nfkb1!0.15!1.77!Nfkb1;;chr16:23988686..23988693,-!p2@Bcl6!0.15!1.77!Bcl6;;chr19:26681721..26681746,+!p9@Smarca2!0.15!1.77!Smarca2;;chr8:72520121..72520135,-!p12@Gatad2a!0.15!1.77!Gatad2a;;chr11:3189683..3189744,+!p2@Patz1!0.15!1.77!Patz1;;chr10:41996451..41996462,-!p5@Foxo3!0.15!0.88!Foxo3;;chr17:46692970..46692977,-!p5@Srf!0.15!0.88!Srf;;chr16:11176344..11176353,-!p2@Zc3h7a!0.15!0.88!Zc3h7a;;chr18:69753168..69753186,+!p12@Tcf4!0.15!0.88!Tcf4;;chr17:51971932..51971958,-!p2@Satb1!0.15!0.88!Satb1;;
@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011464
 |is_obsolete=
+|library_id=CNhs10483
+|library_id_phase_based=2:CNhs10483
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;56
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;56
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520adult.CNhs10483.56-12G2.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520adult.CNhs10483.56-12G2.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520adult.CNhs10483.56-12G2.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520adult.CNhs10483.56-12G2.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/bone%2520%2528os%2520femoris%2529%252c%2520adult.CNhs10483.56-12G2.mm9.nobarcode.rdna.fa.gz
 |name=bone (os femoris), adult
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10483,LSID647,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.393922271225261,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670054303825638,0,0,0,0,0,-0.0717119162921723,-0.0490789545117492,0.128705286729565,-0.708989748070519,0.00535298039695603,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,-0.0428469550828748,0,0.157407443958918,0,0,0,-0.077972755440206,-0.0354290389320789,-0.158091042771083,0.0553851039008335,0,-0.0780086007519514,-0.0639922784399275,0,0,0,-0.0624085794533537,-0.000845105295295599,0.469116545943699,-0.0788315948399074,0,0,0,0,0,0,0.156308964982818,-0.0435582352882422,0.400323520314389,0,0,0,0,0
@@ Line 62: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 82: / Line 97: @@
 |top_motifs=GATA6:2.31656737923;NFE2L2:1.82990824613;NFE2:1.60798969443;SPIB:1.5492168164;MEF2{A,B,C,D}:1.43254630944;SPI1:1.43160175769;RUNX1..3:1.33449816303;IRF7:1.27887596948;ETS1,2:1.19521356071;TLX2:1.11176210273;CEBPA,B_DDIT3:1.09911927596;PAX2:1.08175454666;POU5F1:0.944263615725;HOX{A5,B5}:0.931649033647;NR1H4:0.910395110884;IRF1,2:0.891870738437;TFAP4:0.86669080128;ALX4:0.849555377845;FOXL1:0.841548744529;DMAP1_NCOR{1,2}_SMARC:0.841360976431;NFATC1..3:0.828314182688;NR6A1:0.827815639045;POU2F1..3:0.811240586658;TAL1_TCF{3,4,12}:0.799143332282;ELF1,2,4:0.791192852929;STAT5{A,B}:0.787368532054;MYB:0.781698298289;NKX2-2,8:0.777490389039;E2F1..5:0.774686003574;STAT2,4,6:0.742744444003;EBF1:0.72954117663;GLI1..3:0.722788580043;PAX1,9:0.690075261573;NFE2L1:0.686298713186;ZNF148:0.674218739612;LMO2:0.60990114706;SRF:0.606908502429;RXRA_VDR{dimer}:0.578980633756;FOXO1,3,4:0.578493647638;SREBF1,2:0.549759384274;MYOD1:0.541187419121;ESR1:0.536672505838;MAFB:0.527527171145;NR3C1:0.526919223124;NFKB1_REL_RELA:0.510342192876;YY1:0.489255104188;GFI1:0.476841629948;BACH2:0.463131186813;TBP:0.453824847337;PBX1:0.446861783653;TGIF1:0.444991312698;FOX{I1,J2}:0.386687248326;HLF:0.38098746848;POU1F1:0.341982096922;HES1:0.32760419663;NHLH1,2:0.327201962931;NR5A1,2:0.32538459844;AIRE:0.317144415439;ZNF423:0.316257538243;TBX4,5:0.305102752275;TFAP2{A,C}:0.292773404694;HOX{A4,D4}:0.274015388865;TFDP1:0.247328010592;FOX{F1,F2,J1}:0.218248191647;OCT4_SOX2{dimer}:0.168425105527;PPARG:0.163267670602;TOPORS:0.0596243832508;SMAD1..7,9:0.0366425141823;GCM1,2:0.0236210478165;NKX2-3_NKX2-5:-0.0239619347555;MTF1:-0.05849731611;ZBTB16:-0.0623788206537;FOS_FOS{B,L1}_JUN{B,D}:-0.0923075611465;RXR{A,B,G}:-0.108734345849;TFCP2:-0.111246922379;NFY{A,B,C}:-0.125066183683;FOXA2:-0.181850880433;PRDM1:-0.182164865256;ALX1:-0.197426359941;HOXA9_MEIS1:-0.220180941717;CRX:-0.23303946882;MYFfamily:-0.263940745364;UFEwm:-0.30354864371;ATF5_CREB3:-0.306959684717;ZNF238:-0.334262838365;TEAD1:-0.335798313907;NANOG{mouse}:-0.342251409942;RREB1:-0.350325112219;FOX{D1,D2}:-0.388025294326;SOX{8,9,10}:-0.394318837526;GTF2A1,2:-0.396767144569;EP300:-0.404719328844;SOX17:-0.405873295943;PRRX1,2:-0.428040399702;ZIC1..3:-0.441388908763;HMGA1,2:-0.441639706559;CDX1,2,4:-0.44481070803;ESRRA:-0.459755505167;RORA:-0.467544999356;PITX1..3:-0.488727648062;JUN:-0.504040244009;bHLH_family:-0.506240561998;BPTF:-0.520926131668;MYBL2:-0.534083142838;XCPE1{core}:-0.536629092683;SPZ1:-0.541930125098;RFX2..5_RFXANK_RFXAP:-0.544790393352;PAX5:-0.54481428667;HIF1A:-0.546705489176;TLX1..3_NFIC{dimer}:-0.55525709102;EN1,2:-0.556999547764;FOSL2:-0.566742178145;IKZF1:-0.567653418072;NRF1:-0.603825243377;SNAI1..3:-0.607369196321;NFIL3:-0.619900804491;HNF4A_NR2F1,2:-0.622330493079;ATF4:-0.649684099116;IKZF2:-0.676721283406;ARID5B:-0.697581935622;SP1:-0.709049463721;BREu{core}:-0.710383236164;ZNF143:-0.716693727922;TFAP2B:-0.74943914919;ZBTB6:-0.772835159084;REST:-0.775972807002;HNF1A:-0.784500871472;ELK1,4_GABP{A,B1}:-0.78608284459;FOXQ1:-0.792415132031;LHX3,4:-0.795771469279;MAZ:-0.800266860258;RFX1:-0.819286160215;TEF:-0.827001715727;FOXM1:-0.848781140371;ZFP161:-0.854069522501;TP53:-0.867502508365;CREB1:-0.868763044409;MZF1:-0.869323265317;GATA4:-0.871859594775;HIC1:-0.873645319776;AR:-0.881800612161;ZEB1:-0.905601689313;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.937463139551;KLF4:-0.937822432602;MED-1{core}:-0.945157746418;PATZ1:-0.953788764048;NKX2-1,4:-0.979424426004;POU6F1:-0.991286183498;PAX8:-1.00843919766;PDX1:-1.01269750226;EGR1..3:-1.01887731633;EVI1:-1.02076380181;GFI1B:-1.02533844432;AHR_ARNT_ARNT2:-1.03505475347;GTF2I:-1.07153884027;SOX5:-1.07750170823;NKX3-2:-1.11322876729;HMX1:-1.12991167048;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.13447573127;NFIX:-1.13997348259;VSX1,2:-1.1517968527;MTE{core}:-1.15242359077;ATF6:-1.16113953461;FOXP1:-1.1763255747;T:-1.2087163145;CUX2:-1.25941701225;PAX6:-1.27310542816;ZNF384:-1.34119919744;NKX3-1:-1.34482138295;POU3F1..4:-1.3536595106;NKX6-1,2:-1.35414880188;HSF1,2:-1.39500895426;ATF2:-1.41007112358;HAND1,2:-1.42464076268;FOXP3:-1.48802079009;SOX2:-1.49434928702;PAX4:-1.51797223618;STAT1,3:-1.54711374016;NANOG:-1.60711385559;FOXN1:-1.71460981121;LEF1_TCF7_TCF7L1,2:-1.83155213715;FOXD3:-1.83531220259;ONECUT1,2:-1.83930767736;RBPJ:-1.884570948;HBP1_HMGB_SSRP1_UBTF:-1.90360728169;CDC5L:-1.96225737183;GZF1:-1.97354241011;DBP:-2.06237466869;ADNP_IRX_SIX_ZHX:-2.08065488175
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:56-12G2;search_select_hide=table117:56-12G2
 }}

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FF:56-12G2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:18, 4 June 2020

CNhs10483

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0