FFCP PHASE1:Hg19::chr2:242255120..242255143,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:242255120..242255143,-
|short_description=p4@HDLBP
|description=CAGE_peak_4_at_HDLBP_5end
|association_with_transcript=0bp_to_ENST00000462130_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3069 | |EntrezGene=3069 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4857 | |HGNC=4857 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000462130_5end | |||
|cluster_id=chr2:242255120..242255143,- | |||
|description=CAGE_peak_4_at_HDLBP_5end | |||
|id=chr2:242255120..242255143,- | |||
|ontology_enrichment_celltype=CL:0000055!2.19e-23!180;CL:0002321!4.79e-15!248;CL:0000220!1.09e-14!246;CL:0000548!6.50e-14!679;CL:0000004!6.50e-14!679;CL:0000255!6.50e-14!679;CL:0000012!3.66e-13!682;CL:0000057!3.54e-12!75;CL:0000222!9.41e-11!119;CL:0000066!3.31e-09!254;CL:0000144!1.09e-08!625;CL:0000680!1.42e-08!57;CL:0000056!1.42e-08!57;CL:0000355!1.42e-08!57;CL:0000187!5.56e-08!54;CL:0000192!1.02e-07!42;CL:0000514!1.02e-07!42;CL:0000003!1.43e-07!722;CL:0002371!6.44e-07!591;CL:0000393!8.33e-07!60;CL:0000211!8.33e-07!60;CL:0000183!8.76e-07!59 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,6.47e-15,250;CL:0000057,4.52e-12,76;CL:0000222,1.42e-10,121;CL:0000066,2.08e-09,253;CL:0000680,3.38e-08,58;CL:0000056,3.38e-08,58;CL:0000355,3.38e-08,58;CL:0000187,1.30e-07,55;CL:0000192,2.71e-07,43;CL:0000514,2.71e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.30e-11!83;UBERON:0002329!2.30e-11!83;UBERON:0003077!2.30e-11!83;UBERON:0003059!2.30e-11!83;UBERON:0007282!2.30e-11!83;UBERON:0009618!2.30e-11!83;UBERON:0007285!2.30e-11!83;UBERON:0000486!9.51e-11!82;UBERON:0004290!7.87e-10!70;UBERON:0002100!2.43e-09!216;UBERON:0000475!4.11e-09!365;UBERON:0005256!2.04e-08!143;UBERON:0001134!4.66e-08!61;UBERON:0002036!4.66e-08!61;UBERON:0003082!4.66e-08!61;UBERON:0000119!7.29e-08!312;UBERON:0003102!7.96e-08!95;UBERON:0000490!1.02e-07!138;UBERON:0004535!1.31e-07!110;UBERON:0002049!2.10e-07!79;UBERON:0007798!2.10e-07!79;UBERON:0002385!2.65e-07!63;UBERON:0001015!2.65e-07!63;UBERON:0000383!2.65e-07!63;UBERON:0003104!2.72e-07!238;UBERON:0009142!2.72e-07!238;UBERON:0001009!3.30e-07!113;UBERON:0000483!3.45e-07!309;UBERON:0004872!6.11e-07!84;UBERON:0000055!7.76e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,2.16e-10,83;UBERON:0002329,1.84e-09,71;UBERON:0003059,1.84e-09,71;UBERON:0007282,1.84e-09,71;UBERON:0004290,1.84e-09,71;UBERON:0009618,1.84e-09,71;UBERON:0003077,3.12e-09,72;UBERON:0007285,3.12e-09,72;UBERON:0007524,5.17e-09,73;UBERON:0000490,5.71e-09,148;UBERON:0002100,1.25e-08,199;UBERON:0003102,2.03e-08,99;UBERON:0007503,2.56e-08,78;UBERON:0001134,1.03e-07,62;UBERON:0002036,1.03e-07,62;UBERON:0003082,1.03e-07,62;UBERON:0000119,1.04e-07,309;UBERON:0004535,1.33e-07,109;UBERON:0002049,1.81e-07,78;UBERON:0007798,1.81e-07,78;UBERON:0001009,3.37e-07,112;UBERON:0000483,4.84e-07,306;UBERON:0004872,5.74e-07,83;UBERON:0002385,6.07e-07,64;UBERON:0001015,6.07e-07,64;UBERON:0000383,6.07e-07,64;UBERON:0000055,6.65e-07,68 | |||
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| ||
|short_description=p4@HDLBP | |||
}} | }} |
Latest revision as of 10:20, 16 September 2015
Short description: | p4@HDLBP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HDLBP_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000462130_5end |
EntrezGene: | HDLBP |
HGNC: | 4857 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 6.47e-15 | 250 |
fibroblast | 4.52e-12 | 76 |
mesodermal cell | 1.42e-10 | 121 |
epithelial cell | 2.08e-09 | 253 |
muscle precursor cell | 3.38e-08 | 58 |
myoblast | 3.38e-08 | 58 |
multi-potent skeletal muscle stem cell | 3.38e-08 | 58 |
muscle cell | 1.30e-07 | 55 |
smooth muscle cell | 2.71e-07 | 43 |
smooth muscle myoblast | 2.71e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 2.16e-10 | 83 |
somite | 1.84e-09 | 71 |
presomitic mesoderm | 1.84e-09 | 71 |
presumptive segmental plate | 1.84e-09 | 71 |
dermomyotome | 1.84e-09 | 71 |
trunk paraxial mesoderm | 1.84e-09 | 71 |
paraxial mesoderm | 3.12e-09 | 72 |
presumptive paraxial mesoderm | 3.12e-09 | 72 |
dense mesenchyme tissue | 5.17e-09 | 73 |
unilaminar epithelium | 5.71e-09 | 148 |
trunk | 1.25e-08 | 199 |
surface structure | 2.03e-08 | 99 |
epithelial vesicle | 2.56e-08 | 78 |
skeletal muscle tissue | 1.03e-07 | 62 |
striated muscle tissue | 1.03e-07 | 62 |
myotome | 1.03e-07 | 62 |
cell layer | 1.04e-07 | 309 |
cardiovascular system | 1.33e-07 | 109 |
vasculature | 1.81e-07 | 78 |
vascular system | 1.81e-07 | 78 |
circulatory system | 3.37e-07 | 112 |
epithelium | 4.84e-07 | 306 |
splanchnic layer of lateral plate mesoderm | 5.74e-07 | 83 |
muscle tissue | 6.07e-07 | 64 |
musculature | 6.07e-07 | 64 |
musculature of body | 6.07e-07 | 64 |
vessel | 6.65e-07 | 68 |