FFCP PHASE1:Hg19::chr3:47023475..47023498,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:47023475..47023498,-
|short_description=p2@CCDC12
|description=CAGE_peak_2_at_CCDC12_5end
|association_with_transcript=1bp_to_ENST00000492819_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=151903 | |EntrezGene=151903 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28332 | |HGNC=28332 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=1bp_to_ENST00000492819_5end | |||
|cluster_id=chr3:47023475..47023498,- | |||
|description=CAGE_peak_2_at_CCDC12_5end | |||
|id=chr3:47023475..47023498,- | |||
|ontology_enrichment_celltype=CL:0000115!4.75e-14!35;CL:0002139!3.49e-13!24;CL:0002057!6.24e-10!42;CL:0002078!7.73e-10!44;CL:0000071!2.35e-09!18;CL:0002546!2.35e-09!18;CL:0000766!8.01e-09!76;CL:0000860!1.26e-08!45;CL:0002009!9.81e-08!65;CL:0000763!1.08e-07!112;CL:0000049!1.08e-07!112;CL:0002194!5.46e-07!63;CL:0000576!5.46e-07!63;CL:0000040!5.46e-07!63;CL:0000559!5.46e-07!63 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.70e-15;24!CL:0000115;3.19e-15;36!CL:0000071;6.97e-12;18!CL:0002078;3.35e-09;45!CL:0002188;9.47e-09;5!CL:0002543;8.49e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,8.41e-19,36;CL:0002139,7.98e-16,24;CL:0002078,9.34e-14,45;CL:0000071,1.81e-12,18;CL:0002546,1.81e-12,18;CL:0000213,2.50e-09,58;CL:0000215,2.50e-09,58;CL:0002188,9.86e-09,5;CL:0002543,3.12e-08,6;CL:0000875,7.43e-07,3;CL:0002396,7.43e-07,3;CL:0002618,9.16e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;6.97e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5093;5.50e-08;4!DOID:1612;5.50e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,4.01e-08,4;DOID:1612,4.01e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.49e-17!115;UBERON:0002193!6.14e-10!112;UBERON:0001986!2.35e-09!18;UBERON:0004638!2.35e-09!18;UBERON:0004852!2.35e-09!18;UBERON:0000487!3.96e-09!22;UBERON:0003081!1.19e-08!216;UBERON:0002390!6.96e-08!102;UBERON:0003061!6.96e-08!102;UBERON:0006914!2.63e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0000487;9.41e-13;22!UBERON:0004638;6.97e-12;18!UBERON:0001986;6.97e-12;18!UBERON:0004852;6.97e-12;18!UBERON:0006914;8.73e-11;25!UBERON:0000490;2.25e-07;33!UBERON:0001638;7.53e-07;9!UBERON:0003920;7.53e-07;9!UBERON:0004582;7.53e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000487,3.33e-13,22;UBERON:0004638,1.81e-12,18;UBERON:0001986,1.81e-12,18;UBERON:0004852,1.81e-12,18;UBERON:0000058,1.94e-11,19;UBERON:0006914,3.58e-11,25;UBERON:0003081,2.81e-10,203;UBERON:0004876,2.60e-09,11;UBERON:0000080,4.21e-09,9;UBERON:0002120,4.21e-09,9;UBERON:0004875,4.21e-09,9;UBERON:0005721,4.21e-09,9;UBERON:0005754,4.21e-09,9;UBERON:0007297,4.21e-09,9;UBERON:0003887,3.20e-08,12;UBERON:0005103,2.01e-07,8;UBERON:0000083,2.01e-07,8;UBERON:0009201,2.01e-07,8;UBERON:0006553,2.01e-07,8;UBERON:0003074,2.01e-07,8;UBERON:0003060,2.01e-07,8;UBERON:0001638,4.10e-07,9;UBERON:0003920,4.10e-07,9;UBERON:0004582,4.10e-07,9;UBERON:0007023,4.96e-07,114;UBERON:0006947,7.87e-07,3;UBERON:0004054,7.87e-07,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,1.39560233594486,1.52908960491121,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0.786728553697808,0,0.309632246632152,0,0.30120591877825,1.10926203050036,0,0,1.17440175733939,0.553995408531877,0.200544447470142,0.434021741431704,0.223915474239924,0.32389366601898,0,1.89017710413434,1.13362783106643,3.15359279544161,0.464858073811369,0,1.23882548358041,0,0.512321413058201,0.236482229888585,0,0,0,1.31769637679823,0.545812300115692,0.674170453335254,0.612167784741805,0.641858054152187,0,0.989553900560148,0,0.426224750532694,0.290209238628584,1.13477044938228,0,0.251248665256743,0,0.434377689410233,2.42159801053347,0,0,1.47878700418359,1.4882300997553,0.628975936525128,1.23561494261145,1.05123824989054,1.44653028027372,6.27028036230747,2.98375015798635,2.92262646023414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557052284425868,0.589211814949674,0.221533894583621,0,0.128091319725675,0.390178042679635,0.164437904603676,0,0,0,0,0,0.679856056185397,0,0,0,0,0,0,0.451725357233318,0,0,0,0.821127996921047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.654895377488563,0.728590576585084,3.70784442784429,0,0.174129737299267,0.132957960518865,0,0,0,3.57772333260069,0.860234595106124,1.73570250803797,0.56530794192401,0,1.10047216776027,1.8809546988313,2.06733407335463,0.71153252537342,1.67360306382335,1.61131726843659,2.28081631715554,2.92874469057803,0.735326160691737,0,3.92918804449951,4.4905874525234,1.91439516821648,0,1.89853131913626,3.48083313467774,13.1780417436063,7.75560528296651,2.61656431285521,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.16708818237254,0,0,0,0,0,0,0,0.368965315629341,0,0.548751427043128,0,0.201057944823262,1.29623823221941,0,0,0,0,0,1.15493158208859,3.24089858803628,0.951270761172991,1.58040879591855,2.57545848628462,0,0.468008530278475,0.445893486866185,0,0,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197030760201927,0,0,0,0,0,0,0,1.49801404789436,5.9832291840805,2.07207756718018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.601519410909855,0.276242966807689,0,0,0,1.35359883872224,0.616122696835318,0,0,0.211103257785751,3.4120015221269,2.04112446331819,1.29549549661284,1.54227252690289,0,0,0,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.330569830721956,0.192190067365106,0.255225424989168,0.30347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.673554789078584,0.670302275535787,0,0.188287601553558,0.43050537267123,0,3.10401107475673,0.918893600827838,3.55213326462519,2.29391162142713,3.41788312304498,2.1440859791201,0.822724546172388,1.29694662238543,1.08006287447623,2.37937552888281,0,0,0,0,0,0,0,0,0.5745161103971,0.423347165447766,0,0.842391534340376,0,0,0,1.69291777801603,0,0,0,0,0,0.447352215784832,0.333698283423817,0,0,0,2.43410110628385,0.66614393599564,0,0.18714054040822,0.439524537815682,0,0.111443384277478,0,1.43246690842614,1.18785872333055,1.22864280839693,0,0,0,0,0,1.19548792950642,0.828851746593443,0.251932747854276,0,0,0,0.359473404589307,1.43216939740487,0,1.1837208676432,0,0,0.969332746095218,0.556608588971108,0,2.3438498497671,8.57107999962718,0,0,2.03402920234213,0.236387681767936,0,0,0,0,0,0,0,0,0.438770794307945,0,2.92789862985067,2.00070672109872,0,0,0,0,0,0.0915975934018623,0,0,0,0.166211681900156,0,0,0,0,0.158936578980379,0,0.163232808159148,0,0,0.995261931078505,0.973033209536731,1.22206028986725,0,0,0,0.134802265961354,1.60515529459758,0,0,1.36965233252463,0,4.3404284313433,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0.520679215005393,0.979923974143776,0,1.7472666824203,0,0,0,0,7.66213230258513,0,2.48578814858586,0,0,0.316553979779393,0,0.320635281006135,3.20179492109029,0,0.432271251462318,0,0,0,0,1.41416420770077,0,0,0,0,0,0,0,0,0,0.558564802544508,0.916641696046735,0,1.39775300349294,0.429226048136571,0.669514372325618,0.403100834920358,0,0,0,0.164831716762333,0,0,0,0,0,0,0,0,1.349843349309,0.77380195455795,0.303747783290123,0.670869375198532,0.709251365692784,0.734364233889974,0,0,0,0,0.662091970365432,0,0,0,0,0,0.246277562248017,0,0,0.439656701034247,0,0.129282956361551,0.13223260174269,0,2.81926008926669,0.854299300541557,1.41483874589699,2.07119527673598,0,0,0,0.638341257770182,0.544017803369474,1.0027595760908,0,0.327872630709804,1.09937867375164,0,0.366078794705889,0,0.573409195690071,0,0.18628920882415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.779441235357554,0.398594520940089,0.817826971279221,0,0,0.422624246717254,0,0.106691729694141,0,0,0,0.279759015438889,1.24415452006595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.207471757392654,0.161475645631851,1.42769420259154,0.2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| ||
|short_description=p2@CCDC12 | |||
}} | }} |
Latest revision as of 12:05, 18 September 2015
Short description: | p2@CCDC12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CCDC12_5end |
Coexpression cluster: | NA |
Association with transcript: | 1bp_to_ENST00000492819_5end |
EntrezGene: | CCDC12 |
HGNC: | 28332 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 8.41e-19 | 36 |
endothelial cell of vascular tree | 7.98e-16 | 24 |
meso-epithelial cell | 9.34e-14 | 45 |
blood vessel endothelial cell | 1.81e-12 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.81e-12 | 18 |
lining cell | 2.50e-09 | 58 |
barrier cell | 2.50e-09 | 58 |
glomerular endothelial cell | 9.86e-09 | 5 |
vein endothelial cell | 3.12e-08 | 6 |
non-classical monocyte | 7.43e-07 | 3 |
CD14-low, CD16-positive monocyte | 7.43e-07 | 3 |
endothelial cell of umbilical vein | 9.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
simple squamous epithelium | 3.33e-13 | 22 |
blood vessel endothelium | 1.81e-12 | 18 |
endothelium | 1.81e-12 | 18 |
cardiovascular system endothelium | 1.81e-12 | 18 |
duct | 1.94e-11 | 19 |
squamous epithelium | 3.58e-11 | 25 |
lateral plate mesoderm | 2.81e-10 | 203 |
urogenital ridge | 2.60e-09 | 11 |
mesonephros | 4.21e-09 | 9 |
pronephros | 4.21e-09 | 9 |
nephrogenic cord | 4.21e-09 | 9 |
pronephric mesoderm | 4.21e-09 | 9 |
rostral part of nephrogenic cord | 4.21e-09 | 9 |
presumptive pronephric mesoderm | 4.21e-09 | 9 |
intraembryonic coelom | 3.20e-08 | 12 |
mesonephric epithelium | 2.01e-07 | 8 |
mesonephric tubule | 2.01e-07 | 8 |
nephric duct | 2.01e-07 | 8 |
renal duct | 2.01e-07 | 8 |
mesonephric duct | 2.01e-07 | 8 |
pronephric duct | 2.01e-07 | 8 |
vein | 4.10e-07 | 9 |
venous blood vessel | 4.10e-07 | 9 |
venous system | 4.10e-07 | 9 |
adult organism | 4.96e-07 | 114 |
male genital duct | 7.87e-07 | 3 |
internal male genitalia | 7.87e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 4.01e-08 | 4 |
breast cancer | 4.01e-08 | 4 |