FFCP PHASE1:Hg19::chr3:55515368..55515393,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:55515368..55515393,-
|short_description=p1@WNT5A
|description=CAGE_peak_1_at_WNT5A_5end
|association_with_transcript=9bp_to_uc010hmw.2_5end
|EntrezGene=74...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7474 | |EntrezGene=7474 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12784 | |HGNC=12784 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=9bp_to_uc010hmw.2_5end | |||
|cluster_id=chr3:55515368..55515393,- | |||
|coexpression_cluster_id=C1516 | |||
|description=CAGE_peak_1_at_WNT5A_5end | |||
|id=chr3:55515368..55515393,- | |||
|ontology_enrichment_celltype=CL:0000055!5.58e-25!180;CL:0000057!8.05e-18!75;CL:0002620!1.76e-11!23;CL:0000680!1.67e-08!57;CL:0000056!1.67e-08!57;CL:0000355!1.67e-08!57;CL:0000187!1.80e-07!54;CL:0000183!2.19e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000134;6.72e-13;55!CL:0000349;1.03e-12;19!CL:0002620;1.35e-12;23!CL:0000723;1.09e-11;61!CL:0000048;8.73e-11;58!CL:0000057;2.91e-08;73!CL:0002320;2.97e-08;188!CL:0000034;3.32e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.82e-19,76;CL:0000349,1.03e-12,19;CL:0002620,1.77e-12,23;CL:0000048,4.30e-10,427;CL:0000723,2.19e-09,433;CL:0000034,1.71e-08,441;CL:0000680,7.33e-08,58;CL:0000056,7.33e-08,58;CL:0000355,7.33e-08,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.42e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.34e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!2.87e-13!95;UBERON:0000914!5.49e-13!83;UBERON:0002329!5.49e-13!83;UBERON:0003077!5.49e-13!83;UBERON:0003059!5.49e-13!83;UBERON:0007282!5.49e-13!83;UBERON:0009618!5.49e-13!83;UBERON:0007285!5.49e-13!83;UBERON:0000475!5.84e-13!365;UBERON:0005631!4.52e-11!14;UBERON:0000158!4.52e-11!14;UBERON:0004290!5.93e-10!70;UBERON:0002199!1.85e-09!45;UBERON:0002416!1.85e-09!45;UBERON:0000481!2.24e-09!347;UBERON:0005256!3.53e-09!143;UBERON:0000486!6.78e-09!82;UBERON:0000478!6.68e-08!24;UBERON:0002097!7.11e-08!40;UBERON:0002385!1.53e-07!63;UBERON:0001015!1.53e-07!63;UBERON:0000383!1.53e-07!63;UBERON:0001134!1.75e-07!61;UBERON:0002036!1.75e-07!61;UBERON:0003082!1.75e-07!61;UBERON:0001444!2.41e-07!48;UBERON:0004871!5.22e-07!8;UBERON:0000305!8.41e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.34e-10;10!UBERON:0000158;2.34e-10;10!UBERON:0000478;8.07e-10;24!UBERON:0000305;3.48e-08;7!UBERON:0002097;5.05e-08;41!UBERON:0002384;2.73e-07;198!UBERON:0002199;4.52e-07;46!UBERON:0002416;4.52e-07;46!UBERON:0003102;5.14e-07;50!UBERON:0001737;7.27e-07;9!UBERON:0001557;7.27e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.47e-13,14;UBERON:0000158,1.47e-13,14;UBERON:0003102,1.68e-12,99;UBERON:0002199,1.09e-11,46;UBERON:0002416,1.09e-11,46;UBERON:0002097,3.97e-10,41;UBERON:0000478,8.13e-10,24;UBERON:0007524,7.21e-09,73;UBERON:0002329,1.15e-08,71;UBERON:0003059,1.15e-08,71;UBERON:0007282,1.15e-08,71;UBERON:0004290,1.15e-08,71;UBERON:0009618,1.15e-08,71;UBERON:0004871,1.93e-08,8;UBERON:0003077,2.22e-08,72;UBERON:0007285,2.22e-08,72;UBERON:0007503,3.25e-08,78;UBERON:0000305,3.52e-08,7;UBERON:0000486,4.79e-07,83;UBERON:0003124,5.12e-07,7;UBERON:0001737,7.13e-07,9;UBERON:0001134,9.98e-07,62;UBERON:0002036,9.98e-07,62;UBERON:0003082,9.98e-07,62 | |||
|phase1_expression=3.27021082687002,2.99740733447376,0.704772020479856,4.00293193412522,3.5756887554183,2.61701557230111,17.7309914717817,3.79031924056099,0.261185628199839,0,0,119.268989183074,98.6488498574416,2.84662611808107,6.62794751455832,0.672325146451775,0.602694528023977,1.46062018077475,0.975865597581014,20.6843377569004,26.3160891705086,11.5978246946892,3.72106783270374,2.18999080116615,0.753255837568817,0,0,0,0,0,3.2511385896376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,69.7577564102213,137.366587514234,63.5876218238016,58.0558741347302,25.7916481260397,3.30871860074237,12.6385756553661,10.8915134259476,0.523916301990851,0,0,0.324547393654683,1.39303789839414,0.132957960518865,0,0,0,0,1.72046919021225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48485975847659,0.25326102332916,0.794455084879313,0.573673241497627,1.77334191099179,0.560677600142307,3.20246987189115,0.24666754841716,0,1.61652806483626,0,1.51357427644931,1.15235184896,4.21778577300834,0.936480230490962,0.570471821544449,1.19558944441441,2.11382097558777,5.34180716414834,1.26405726032024,21.6403421530187,3.31652656741774,19.9418757669227,180.576434306872,115.968189831643,1.82032272387605,2.87447256726495,5.38675564653012,2.25213335769535,39.6201685142382,21.5099034231611,43.5212670034608,71.3630779806335,0.567160915800105,66.0153859335012,128.775105457596,64.8511617548259,40.5122979713943,90.0679105543956,62.6066512310879,44.1096949505868,11.3080142601648,4.18979122193154,66.3900826262021,88.8281521898189,11.9618082045921,82.3622254638545,26.3970497356418,18.8212257464641,0.193260853163297,0.272746120590835,0,0,0,0,0,0,0,150.191551036623,83.6213219650751,35.9150795516449,37.6138021705903,12.9938306700525,10.1743848034266,10.6208354749204,7.47134192638794,7.72057809126758,7.40790109914181,8.06720104977729,9.16852895489118,9.8110732562673,7.69494313892781,1.4763109092493,5.60967095213783,1.6462960453256,0,0,0,0,0,0,11.8381789105983,0,0,0,0.0925884451585296,4.88712457965487,9.35941306751621,7.21656710126366,4.05756417412769,21.6031997393912,0.288732895522148,0,0,0,0,0,0,0,0,2.51973192298289,0,0,0,0,0,0,0.621984346622316,0,0,1.8414389344729,0,0,0,5.75833959138612,0,0,0.784917590417525,3.05172048183296,0.95339771567235,1.42198887333556,0,17.751357803676,96.8014744368929,35.3625285498645,3.08648849114571,0,3.19706614819319,8.721657613147,13.5655401347861,4.93944202068461,21.8243243476802,9.24019066730619,22.174652442136,10.8518175741451,13.0730018790044,5.09862255028491,0,0,0,0.479249710983165,0,32.8064881593652,8.97644101338991,3.49309748335652,10.9227187576336,0,0,0,0,0.508189248444927,0,0,0.335032530668698,0,0,0,0,0.613457458595699,0.500170521059677,4.06897535549603,31.1956292296211,71.0147375412704,87.9979475889355,91.487445109309,6.92176029373754,2.27407504055985,3.10419213877515,11.9560607736379,12.5371034608358,42.0516694025521,0.587403472388222,0.686286847621712,0,0,0,51.2285595744178,118.169162052453,83.4597209589918,2.48107807818777,2.14846762603287,1.40330047216537,0,0.511707249066704,2.73451665944133,1.48418066444991,11.2573076475939,8.34540108971697,8.21271560138091,11.9428518712233,7.55367459989735,0.120859449591622,0,0,7.69256802702865,7.28364672026868,4.19598127870157,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,3.02282282542995,1.54227252690289,1.08378575017541,0,0,0,0.671624264166535,0,0,0.256450125116389,0,0.325378394664303,0.412164046590889,0,0,6.89118645595407,0,3.21367859688319,21.5575701791432,0.308097234229289,0.614014698904518,5.51346289938122,5.15617175367713,5.075584286998,3.06815858697963,2.75999310504886,0,0,0,0,1.39453664789186,26.1294247869431,3.485186350803,0.308033580176089,0,1.73986598415015,1.11194531462352,1.86062352764589,1.116475108079,3.79655309662471,16.5848268713728,2.303080121802,2.1396949401696,0.318203247925937,1.56989728039846,6.29553601541602,6.58888871366531,8.36468056654374,0.808729926293264,0,1.26377536871694,1.95053495635836,3.1682753652067,0,18.5639879514861,11.8780562841119,0,0,0,0.438450885253763,1.15755106853338,3.27947376023316,6.29022168584383,2.78841148289775,1.69017361519345,2.29458163526482,2.16147890228867,4.9933947207375,0,1.89996871767898,2.30506425071931,4.55367808518858,7.34862912514464,0,0,0,0.753150406214233,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42068073403207,56.3436983980948,153.827704671307,61.1249797177472,0,0.562677665642051,0.445234820091624,0,0,0.19924798825107,0,0,0,0,5.28767299025073,0,0,0,0.690503839458535,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0,1.45802306691627,0.347249989866585,0,0,4.5774520895125,0.995213339381022,0.591095237907095,0.438770794307945,0,0,1.07730361905316,36.1196317034994,0,0,0,24.8820904590897,99.9329744014318,5.33034776018635,0,0,0,0,0,0,0,0.158936578980379,0,0,0,0,0,0.707660516026713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| ||
|short_description=p1@WNT5A | |||
}} | }} |
Latest revision as of 02:55, 19 September 2015
Short description: | p1@WNT5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_WNT5A_5end |
Coexpression cluster: | C1516_amniotic_Fibroblast_Hair_Amniotic_Placental_Chondrocyte_liposarcoma |
Association with transcript: | 9bp_to_uc010hmw.2_5end |
EntrezGene: | WNT5A |
HGNC: | 12784 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.82e-19 | 76 |
extraembryonic cell | 1.03e-12 | 19 |
skin fibroblast | 1.77e-12 | 23 |
multi fate stem cell | 4.30e-10 | 427 |
somatic stem cell | 2.19e-09 | 433 |
stem cell | 1.71e-08 | 441 |
muscle precursor cell | 7.33e-08 | 58 |
myoblast | 7.33e-08 | 58 |
multi-potent skeletal muscle stem cell | 7.33e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.47e-13 | 14 |
membranous layer | 1.47e-13 | 14 |
surface structure | 1.68e-12 | 99 |
integument | 1.09e-11 | 46 |
integumental system | 1.09e-11 | 46 |
skin of body | 3.97e-10 | 41 |
extraembryonic structure | 8.13e-10 | 24 |
dense mesenchyme tissue | 7.21e-09 | 73 |
somite | 1.15e-08 | 71 |
presomitic mesoderm | 1.15e-08 | 71 |
presumptive segmental plate | 1.15e-08 | 71 |
dermomyotome | 1.15e-08 | 71 |
trunk paraxial mesoderm | 1.15e-08 | 71 |
somatic layer of lateral plate mesoderm | 1.93e-08 | 8 |
paraxial mesoderm | 2.22e-08 | 72 |
presumptive paraxial mesoderm | 2.22e-08 | 72 |
epithelial vesicle | 3.25e-08 | 78 |
amnion | 3.52e-08 | 7 |
multilaminar epithelium | 4.79e-07 | 83 |
chorion | 5.12e-07 | 7 |
larynx | 7.13e-07 | 9 |
skeletal muscle tissue | 9.98e-07 | 62 |
striated muscle tissue | 9.98e-07 | 62 |
myotome | 9.98e-07 | 62 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.34e-07 | 14 |