FFCP PHASE1:Hg19::chr5:115779920..115779933,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:115779920..115779933,-
|short_description=p@chr5:115779920..115779933,-
|description=CAGE_peak_at_chr5:115779920..115779933,-
|association_with_transcript=...") |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:115779920..115779933,- | |||
|description=CAGE_peak_at_chr5:115779920..115779933,- | |||
|id=chr5:115779920..115779933,- | |||
|ontology_enrichment_celltype=CL:0000133!3.44e-09!59;CL:0000148!1.77e-08!10;CL:0000541!1.77e-08!10;CL:0000221!4.28e-08!71;CL:0002322!8.16e-08!5;CL:0002319!1.31e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002322;6.55e-27;5!CL:0000148;1.99e-25;10!CL:0000147;6.68e-18;14!CL:0000710;3.00e-12;20!CL:0000075;2.20e-11;27!CL:0002321;8.41e-09;15!CL:0000540;8.49e-09;6!CL:0000404;8.49e-09;6!CL:0002077;6.98e-08;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.78e-27,5;CL:0000148,1.14e-25,10;CL:0000541,1.14e-25,10;CL:0000147,4.51e-18,14;CL:0000710,2.30e-12,20;CL:0000133,4.96e-12,59;CL:0000075,1.80e-11,27;CL:0000047,4.47e-11,8;CL:0000221,1.91e-09,72;CL:0002077,7.29e-09,34;CL:0000540,8.85e-09,6;CL:0000031,8.85e-09,6;CL:0000404,8.85e-09,6;CL:0000333,1.89e-08,41;CL:0002566,9.67e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000031;8.49e-09;6!CL:0000133;2.01e-07;59 | |||
|ontology_enrichment_disease=DOID:3095!7.41e-08!22;DOID:2994!7.41e-08!22 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.61e-20!82;UBERON:0001049!5.43e-19!57;UBERON:0005068!5.43e-19!57;UBERON:0006241!5.43e-19!57;UBERON:0007135!5.43e-19!57;UBERON:0000073!1.34e-18!94;UBERON:0001016!1.34e-18!94;UBERON:0005743!4.16e-18!86;UBERON:0002346!6.18e-16!90;UBERON:0002780!3.58e-15!41;UBERON:0001890!3.58e-15!41;UBERON:0006240!3.58e-15!41;UBERON:0003075!9.13e-15!86;UBERON:0007284!9.13e-15!86;UBERON:0003080!1.34e-14!42;UBERON:0002616!2.18e-14!59;UBERON:0007023!3.91e-14!115;UBERON:0001893!8.55e-14!34;UBERON:0002020!9.22e-14!34;UBERON:0003528!9.22e-14!34;UBERON:0000955!1.62e-13!69;UBERON:0006238!1.62e-13!69;UBERON:0003056!3.93e-13!61;UBERON:0002791!4.32e-13!33;UBERON:0001869!4.88e-12!32;UBERON:0000924!2.02e-11!173;UBERON:0006601!2.02e-11!173;UBERON:0004121!1.65e-10!169;UBERON:0000956!1.09e-08!25;UBERON:0000203!1.09e-08!25;UBERON:0000153!1.43e-07!129;UBERON:0007811!1.43e-07!129;UBERON:0000033!1.57e-07!123;UBERON:0002308!5.43e-07!9;UBERON:0000125!5.43e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;8.99e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,9.15e-07,1;UBERON:0001785,9.15e-07,1;UBERON:0002464,9.15e-07,1;UBERON:0004904,9.15e-07,1;UBERON:0001021,9.15e-07,1;UBERON:0003902,9.15e-07,1;UBERON:0005425,9.15e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61560529038394,0,0.626909442956176,1.14494394852423,0.547497700291537,0.251085279189606,0.305653622991805,0.492603536699674,0.314843125254717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,3.65921118388786,1.85541675650079,3.71820617182459,3.31715376049185,3.28017106138317,4.01475094983413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,1.18157981336281,0,1.10689594688802,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,0,1.27523445472584,0,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0,0,0,2.6669115602711,0,0,1.71072446022705,0.719792448923265,8.70994867747361,1.71495859578347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03275699377971,0,2.31986643833309,0.670065061337395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966875596732978,0,0,0,0,0,0.451199612907412,0.231046011313244,0,0,0.316654886678627,0,0.170093705276516,0,0,0,0,0.509752546090077,0,0.895499018888713,0,0,0,0,0,1.03041011647722,0,0,0,0,0,0.193341436584244,0.154048617114644,0,0.275673144969061,0,0.145016693914229,0,0.979352392114111,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0.276283915531148,0,0.102268682502155,0,0,0,0.179021174675609,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0.583209226766509,0.520874984799877,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0.153900517007594,0.113942055847001,0.46112780877612,0.0897576444097721,0.325942115766024,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0.141353071433941,0,0,0.707660516026713,0,0,0,0,0.67401132980677,0,0.234264445725339,0,0,0,0,2.41981432097328,0.30607276163049,0,0.150323419414493,0.414752765588989,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0.253243183823515,0,0,0,0,0,0,1.37275998289572,0,0,0,0,0,0.101998217636322,0,1.20084057741958,0.410716136675979,0,0,0,0,0,0,0,0,0.669514372325618,0.0671834724867263,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.590564889088493,0,0,0.681017030557878,5.30485389934563,3.30094647833361,0.83088067605837,0,0,0.242998226632099,0,0.0788057072991982,0.157363764404994,0,0.35857467866569,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0.293104467356165,0,0.387848869084652,0.52893040697076,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0.122026264901963,0.500763722825999,0,0.221858103073705,0.248385611765534,0,0,0.758245587708239,0.285465333544967,0,1.40500471742064,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53744911152768,0,0,0.138258436151731,0,0.132864840313363,0,0,0,0,0.19998739585493,0,0.172214979660816,0,0,0,0,0,0.215649622793364,0.314531883711793,0.109209638192014,0,0.212574920101683,0.123935764259002,0,0,0,0,0,1.2249819094128,0.192687675289379,0,0.159633859057151,0.41023272848151,0,0,0.322951291263702,2.85538840518309,0,0,0,0,0,0,0,0.0752103283492573,0,0,1.30953347240711,0,0,0.337687923091973,0,0,0.19024743058172,1.09394961803644,0,0,0.351742488719241,0,1.07140367175657,0.672567444437648,0,0,0.532214220975833,0.115233987555779,0,0.271878931907327,0.394636641377094,0,0,0.078493092850514,0.314231179832004,0,1.82631744101899,0.431855182437243,0,0,0.158013611732727,0,0.521574816907738,0,0,0,0,0.430227358820278,0,0,0,0,0,0,2.23710863595585,0,1.5849330247695,0,0.205325613712494,1.1598144313382,0,0,0.397901550322736,0,1.92008339466232,0.329821550236287,0,0.926089897295336,0.218559560503957,0,0,0,0.392616934229891,0.297046400327086,1.2679671827502,0,0.187967835959707,0.193373663920732,0.0999411559249289,0,0,0.160482733378337,0,0,1.57673541466596,0,0.0679914901909147,0.436350690340377,0,0,0,0,4.92049056856808,1.42045243552804,0.380095503034311,0.917899467677836,0.801652215796681,1.92979289023174,0,0.151557396436479,0.535928260312357,0,0.827463966895162,0.213233981900981,0.23806443146374,0,0,0,0.12729431655633,0.404234377916439,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0.665756774185513,0.201273793591026,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.61560529038394,0,0.626909442956176,1.14494394852423,0.547497700291537,0.251085279189606,0.305653622991805,0.492603536699674,0.314843125254717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.189069634328136,0.221729397462564,0.087834785693126,0,0.728590576585084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0.760272105718513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0,3.65921118388786,1.85541675650079,3.71820617182459,3.31715376049185,3.28017106138317,4.01475094983413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,1.18157981336281,0,1.10689594688802,0.171567810298526,0.109750285408626,0,0,0.0925884451585296,0,0,0,1.27523445472584,0,0,0,0.380508304469197,0,0,0,0,0,0,0,0,0,0,0,0,0.176096868026452,0,0,0,2.6669115602711,0,0,1.71072446022705,0.719792448923265,8.70994867747361,1.71495859578347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03275699377971,0,2.31986643833309,0.670065061337395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966875596732978,0,0,0,0,0,0.451199612907412,0.231046011313244,0,0,0.316654886678627,0,0.170093705276516,0,0,0,0,0.509752546090077,0,0.895499018888713,0,0,0,0,0,1.03041011647722,0,0,0,0,0,0.193341436584244,0.154048617114644,0,0.275673144969061,0,0.145016693914229,0,0.979352392114111,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50787533340481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0.276283915531148,0,0.102268682502155,0,0,0,0.179021174675609,0,0,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0.583209226766509,0.520874984799877,0,0.120596438625408,0,0,0,0.438770794307945,0,0,0.153900517007594,0.113942055847001,0.46112780877612,0.0897576444097721,0.325942115766024,0.638002319463839,0.0915975934018623,0.533034776018635,0,0,0,0,0,0,0,0,0.210998064528027,0.326465616318295,0.141353071433941,0,0,0.707660516026713,0,0,0,0,0.67401132980677,0,0.234264445725339,0,0,0,0,2.41981432097328,0.30607276163049,0,0.150323419414493,0.414752765588989,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.193978032976839,0,0,0,0,0.253243183823515,0,0,0,0,0,0,1.37275998289572,0,0,0,0,0,0.101998217636322,0,1.20084057741958,0.410716136675979,0,0,0,0,0,0,0,0,0.669514372325618,0.0671834724867263,0,0,0.157566364614447,0.0824158583811665,0.0674035438541849,0.590564889088493,0,0,0.681017030557878,5.30485389934563,3.30094647833361,0.83088067605837,0,0,0.242998226632099,0,0.0788057072991982,0.157363764404994,0,0.35857467866569,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0.293104467356165,0,0.387848869084652,0.52893040697076,0,0,0.106787412567695,0.314408610199332,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0.122026264901963,0.500763722825999,0,0.221858103073705,0.248385611765534,0,0,0.758245587708239,0.285465333544967,0,1.40500471742064,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53744911152768,0,0,0.138258436151731,0,0.132864840313363,0,0,0,0,0.19998739585493,0,0.172214979660816,0,0,0,0,0,0.215649622793364,0.314531883711793,0.109209638192014,0,0.212574920101683,0.123935764259002,0,0,0,0,0,1.2249819094128,0.192687675289379,0,0.159633859057151,0.41023272848151,0,0,0.322951291263702,2.85538840518309,0,0,0,0,0,0,0,0.0752103283492573,0,0,1.30953347240711,0,0,0.337687923091973,0,0,0.19024743058172,1.09394961803644,0,0,0.351742488719241,0,1.07140367175657,0.672567444437648,0,0,0.532214220975833,0.115233987555779,0,0.271878931907327,0.394636641377094,0,0,0.078493092850514,0.314231179832004,0,1.82631744101899,0.431855182437243,0,0,0.158013611732727,0,0.521574816907738,0,0,0,0,0.430227358820278,0,0,0,0,0,0,2.23710863595585,0,1.5849330247695,0,0.205325613712494,1.1598144313382,0,0,0.397901550322736,0,1.92008339466232,0.329821550236287,0,0.926089897295336,0.218559560503957,0,0,0,0.392616934229891,0.297046400327086,1.2679671827502,0,0.187967835959707,0.193373663920732,0.0999411559249289,0,0,0.160482733378337,0,0,1.57673541466596,0,0.0679914901909147,0.436350690340377,0,0,0,0,4.92049056856808,1.42045243552804,0.380095503034311,0.917899467677836,0.801652215796681,1.92979289023174,0,0.151557396436479,0.535928260312357,0,0.827463966895162,0.213233981900981,0.23806443146374,0,0,0,0.12729431655633,0.404234377916439,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0.665756774185513,0.201273793591026,0.320568492303233 | ||
|short_description=p@chr5:115779920..115779933,- | |||
}} | }} |
Latest revision as of 08:55, 30 July 2015
Short description: | p@chr5:115779920..115779933, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:115779920..115779933, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.78e-27 | 5 |
melanocyte | 1.14e-25 | 10 |
melanoblast | 1.14e-25 | 10 |
pigment cell | 4.51e-18 | 14 |
neurecto-epithelial cell | 2.30e-12 | 20 |
neurectodermal cell | 4.96e-12 | 59 |
columnar/cuboidal epithelial cell | 1.80e-11 | 27 |
neuronal stem cell | 4.47e-11 | 8 |
ectodermal cell | 1.91e-09 | 72 |
ecto-epithelial cell | 7.29e-09 | 34 |
neuron | 8.85e-09 | 6 |
neuroblast | 8.85e-09 | 6 |
electrically signaling cell | 8.85e-09 | 6 |
migratory neural crest cell | 1.89e-08 | 41 |
dark melanocyte | 9.67e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 9.15e-07 | 1 |
cranial nerve | 9.15e-07 | 1 |
nerve trunk | 9.15e-07 | 1 |
nerve connecting eye with brain | 9.15e-07 | 1 |
nerve | 9.15e-07 | 1 |
retinal neural layer | 9.15e-07 | 1 |
presumptive neural retina | 9.15e-07 | 1 |