FFCP PHASE1:Hg19::chr5:54281688..54281697,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:54281688..54281697,-
|short_description=p6@ESM1
|description=CAGE_peak_6_at_ESM1_5end
|association_with_transcript=-197bp_to_ENST00000381405_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=11082 | |EntrezGene=11082 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3466 | |HGNC=3466 | ||
|TSSclassifier=strong | |||
|UniProt=Q9NQ30 | |UniProt=Q9NQ30 | ||
|association_with_transcript=-197bp_to_ENST00000381405_5end | |||
|cluster_id=chr5:54281688..54281697,- | |||
|coexpression_cluster_id=C4506 | |||
|description=CAGE_peak_6_at_ESM1_5end | |||
|id=chr5:54281688..54281697,- | |||
|ontology_enrichment_celltype=CL:0000222!2.98e-20!119;CL:0000359!5.94e-20!32;CL:0002139!1.35e-18!24;CL:0000192!2.23e-15!42;CL:0000514!2.23e-15!42;CL:0000680!6.40e-14!57;CL:0000056!6.40e-14!57;CL:0000355!6.40e-14!57;CL:0000187!7.31e-14!54;CL:0000071!1.24e-13!18;CL:0002546!1.24e-13!18;CL:0000183!3.32e-13!59;CL:0000393!9.40e-12!60;CL:0000211!9.40e-12!60;CL:0000055!2.62e-11!180;CL:0000115!3.78e-11!35;CL:0002539!1.46e-10!10;CL:0002595!6.61e-10!5;CL:0000220!2.78e-08!246;CL:0002321!4.17e-08!248;CL:0002078!6.52e-08!44;CL:0000213!1.25e-07!57;CL:0000215!1.25e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002595;2.65e-17;5!CL:0000359;1.01e-13;32!CL:0002593;7.51e-12;2!CL:0002589;6.09e-11;2!CL:0000192;4.54e-10;43!CL:0002573;2.00e-08;2!CL:0002601;8.43e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,3.20e-17,5;CL:0000359,2.71e-14,32;CL:0000192,1.86e-12,43;CL:0000514,1.86e-12,43;CL:0002593,9.31e-12,2;CL:0002589,1.31e-10,2;CL:0000222,8.96e-10,121;CL:0000187,2.78e-09,55;CL:0000680,1.07e-08,58;CL:0000056,1.07e-08,58;CL:0000355,1.07e-08,58;CL:0002573,2.01e-08,2;CL:0000393,3.62e-08,61;CL:0000211,3.62e-08,61;CL:0002601,7.77e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000514;4.54e-10;43 | |||
|ontology_enrichment_disease=DOID:2394!1.75e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:0060072;1.60e-12;4!DOID:2394;4.44e-09;14!DOID:201;1.69e-08;6!DOID:0060100;1.69e-08;6!DOID:0060084;5.22e-08;3!DOID:127;5.22e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060072,1.22e-12,4;DOID:2394,3.24e-09,14;DOID:201,1.52e-08,6;DOID:0060100,1.52e-08,6;DOID:0060084,4.87e-08,3;DOID:127,4.87e-08,3;DOID:0060085,9.67e-07,1;DOID:3165,9.67e-07,1;DOID:0060121,9.67e-07,1;DOID:2438,9.67e-07,1;DOID:4418,9.67e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000055!1.22e-33!69;UBERON:0001637!8.63e-31!42;UBERON:0003509!8.63e-31!42;UBERON:0004572!8.63e-31!42;UBERON:0004573!8.66e-31!33;UBERON:0004571!8.66e-31!33;UBERON:0001981!9.70e-31!60;UBERON:0007500!9.70e-31!60;UBERON:0004537!9.70e-31!60;UBERON:0006965!9.70e-31!60;UBERON:0002049!1.11e-27!79;UBERON:0007798!1.11e-27!79;UBERON:0004872!1.99e-26!84;UBERON:0004535!7.22e-24!110;UBERON:0001009!7.61e-23!113;UBERON:0003914!4.91e-19!118;UBERON:0000947!1.32e-15!21;UBERON:0010191!1.32e-15!21;UBERON:0000490!1.32e-15!138;UBERON:0001986!1.24e-13!18;UBERON:0004638!1.24e-13!18;UBERON:0004852!1.24e-13!18;UBERON:0001134!1.63e-12!61;UBERON:0002036!1.63e-12!61;UBERON:0003082!1.63e-12!61;UBERON:0000487!2.21e-12!22;UBERON:0002385!7.01e-12!63;UBERON:0001015!7.01e-12!63;UBERON:0000383!7.01e-12!63;UBERON:0004290!6.50e-11!70;UBERON:0004237!1.46e-10!10;UBERON:0004695!1.46e-10!10;UBERON:0002111!1.46e-10!10;UBERON:0004178!1.46e-10!10;UBERON:0006914!1.91e-10!25;UBERON:0003834!6.61e-10!5;UBERON:0001533!6.61e-10!5;UBERON:0000486!5.40e-09!82;UBERON:0000914!7.58e-09!83;UBERON:0002329!7.58e-09!83;UBERON:0003077!7.58e-09!83;UBERON:0003059!7.58e-09!83;UBERON:0007282!7.58e-09!83;UBERON:0009618!7.58e-09!83;UBERON:0007285!7.58e-09!83;UBERON:0000025!1.31e-08!194;UBERON:0004111!2.60e-08!241;UBERON:0000119!2.57e-07!312;UBERON:0000483!4.39e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;4.01e-19;33!UBERON:0004571;4.01e-19;33!UBERON:0003834;2.65e-17;5!UBERON:0001533;2.65e-17;5!UBERON:0001637;4.78e-16;42!UBERON:0003509;4.78e-16;42!UBERON:0004572;4.78e-16;42!UBERON:0003513;2.13e-12;7!UBERON:0002456;7.51e-12;2!UBERON:0001529;6.09e-11;2!UBERON:0007204;6.09e-11;2!UBERON:0007500;1.86e-08;56!UBERON:0001981;1.86e-08;56!UBERON:0004537;1.86e-08;56!UBERON:0000055;3.43e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,7.58e-20,33;UBERON:0004571,7.58e-20,33;UBERON:0001637,9.96e-18,42;UBERON:0003509,9.96e-18,42;UBERON:0004572,9.96e-18,42;UBERON:0003834,3.20e-17,5;UBERON:0001533,3.20e-17,5;UBERON:0007500,3.69e-16,59;UBERON:0001981,3.69e-16,59;UBERON:0004537,3.69e-16,59;UBERON:0006965,3.69e-16,59;UBERON:0000055,1.26e-15,68;UBERON:0002049,3.49e-13,78;UBERON:0007798,3.49e-13,78;UBERON:0003513,2.44e-12,7;UBERON:0002456,9.31e-12,2;UBERON:0001529,1.31e-10,2;UBERON:0007204,1.31e-10,2;UBERON:0004872,1.42e-10,83;UBERON:0004535,1.75e-08,109;UBERON:0001009,3.60e-08,112;UBERON:0001134,5.29e-08,62;UBERON:0002036,5.29e-08,62;UBERON:0003082,5.29e-08,62;UBERON:0002385,1.09e-07,64;UBERON:0001015,1.09e-07,64;UBERON:0000383,1.09e-07,64;UBERON:0000490,2.72e-07,148;UBERON:0002329,9.82e-07,71;UBERON:0003059,9.82e-07,71;UBERON:0007282,9.82e-07,71;UBERON:0004290,9.82e-07,71;UBERON:0009618,9.82e-07,71 | |||
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| ||
|short_description=p6@ESM1 | |||
}} | }} |
Latest revision as of 03:48, 18 September 2015
Short description: | p6@ESM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ESM1_5end |
Coexpression cluster: | C4506_mesothelioma_schwannoma_Smooth_thyroid_leiomyoma_osteosarcoma_fibrous |
Association with transcript: | -197bp_to_ENST00000381405_5end |
EntrezGene: | ESM1 |
HGNC: | 3466 |
UniProt: | Q9NQ30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 3.20e-17 | 5 |
vascular associated smooth muscle cell | 2.71e-14 | 32 |
smooth muscle cell | 1.86e-12 | 43 |
smooth muscle myoblast | 1.86e-12 | 43 |
smooth muscle cell of the internal thoracic artery | 9.31e-12 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 1.31e-10 | 2 |
mesodermal cell | 8.96e-10 | 121 |
muscle cell | 2.78e-09 | 55 |
muscle precursor cell | 1.07e-08 | 58 |
myoblast | 1.07e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.07e-08 | 58 |
Schwann cell | 2.01e-08 | 2 |
electrically responsive cell | 3.62e-08 | 61 |
electrically active cell | 3.62e-08 | 61 |
uterine smooth muscle cell | 7.77e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 7.58e-20 | 33 |
systemic arterial system | 7.58e-20 | 33 |
artery | 9.96e-18 | 42 |
arterial blood vessel | 9.96e-18 | 42 |
arterial system | 9.96e-18 | 42 |
thoracic segment blood vessel | 3.20e-17 | 5 |
subclavian artery | 3.20e-17 | 5 |
epithelial tube open at both ends | 3.69e-16 | 59 |
blood vessel | 3.69e-16 | 59 |
blood vasculature | 3.69e-16 | 59 |
vascular cord | 3.69e-16 | 59 |
vessel | 1.26e-15 | 68 |
vasculature | 3.49e-13 | 78 |
vascular system | 3.49e-13 | 78 |
trunk blood vessel | 2.44e-12 | 7 |
internal thoracic artery | 9.31e-12 | 2 |
brachiocephalic artery | 1.31e-10 | 2 |
brachiocephalic vasculature | 1.31e-10 | 2 |
splanchnic layer of lateral plate mesoderm | 1.42e-10 | 83 |
cardiovascular system | 1.75e-08 | 109 |
circulatory system | 3.60e-08 | 112 |
skeletal muscle tissue | 5.29e-08 | 62 |
striated muscle tissue | 5.29e-08 | 62 |
myotome | 5.29e-08 | 62 |
muscle tissue | 1.09e-07 | 64 |
musculature | 1.09e-07 | 64 |
musculature of body | 1.09e-07 | 64 |
unilaminar epithelium | 2.72e-07 | 148 |
somite | 9.82e-07 | 71 |
presomitic mesoderm | 9.82e-07 | 71 |
presumptive segmental plate | 9.82e-07 | 71 |
dermomyotome | 9.82e-07 | 71 |
trunk paraxial mesoderm | 9.82e-07 | 71 |
Ontology term | p-value | n |
---|---|---|
benign neoplasm | 1.22e-12 | 4 |
ovarian cancer | 3.24e-09 | 14 |
connective tissue cancer | 1.52e-08 | 6 |
musculoskeletal system cancer | 1.52e-08 | 6 |
cell type benign neoplasm | 4.87e-08 | 3 |
leiomyoma | 4.87e-08 | 3 |
organ system benign neoplasm | 9.67e-07 | 1 |
skin benign neoplasm | 9.67e-07 | 1 |
integumentary system benign neoplasm | 9.67e-07 | 1 |
dermis tumor | 9.67e-07 | 1 |
cutaneous fibrous histiocytoma | 9.67e-07 | 1 |