FFCP PHASE1:Hg19::chr6:152506501..152506532,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:152506501..152506532,-
|short_description=p5@SYNE1
|description=CAGE_peak_5_at_SYNE1_5end
|association_with_transcript=0bp_to_uc011eez.1_5end
|EntrezGene=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc011eez.1_5end | |||
|cluster_id=chr6:152506501..152506532,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_5_at_SYNE1_5end | |||
|id=chr6:152506501..152506532,- | |||
|ontology_enrichment_celltype=CL:0002087!3.82e-38!119;CL:0000838!1.38e-37!52;CL:0000738!3.04e-37!140;CL:0000542!1.41e-36!53;CL:0000051!1.41e-36!53;CL:0002031!1.73e-31!124;CL:0000037!2.48e-27!172;CL:0000566!2.48e-27!172;CL:0000791!6.06e-25!18;CL:0000789!6.06e-25!18;CL:0002420!6.06e-25!18;CL:0002419!6.06e-25!18;CL:0000790!6.06e-25!18;CL:0000988!1.88e-24!182;CL:0002032!1.90e-24!165;CL:0000837!1.90e-24!165;CL:0000084!8.98e-20!25;CL:0000827!8.98e-20!25;CL:0000236!1.34e-17!14;CL:0000625!4.13e-16!11;CL:0000945!2.44e-15!24;CL:0000826!2.44e-15!24;CL:0000624!1.77e-09!6;CL:0002057!3.00e-09!42;CL:0000860!3.22e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.94e-41;18!CL:0000789;2.94e-41;18!CL:0002419;2.94e-41;18!CL:0000542;7.98e-32;53!CL:0000084;4.01e-31;25!CL:0000236;4.52e-27;13!CL:0000625;2.83e-26;11!CL:0000945;2.27e-17;24!CL:0000624;6.56e-15;6!CL:0002087;4.68e-11;104!CL:0000898;1.89e-08;3!CL:0000623;7.05e-08;3!CL:0000226;1.76e-07;3!CL:0000842;1.76e-07;3!CL:0000767;2.60e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.14e-52,52;CL:0000542,1.85e-51,53;CL:0000051,1.85e-51,53;CL:0000791,3.16e-41,18;CL:0000789,3.16e-41,18;CL:0002420,3.16e-41,18;CL:0002419,3.16e-41,18;CL:0000790,3.16e-41,18;CL:0002087,4.22e-31,115;CL:0000084,4.74e-31,25;CL:0000827,4.74e-31,25;CL:0000738,7.23e-30,136;CL:0000236,9.87e-29,14;CL:0000625,3.34e-26,11;CL:0002031,9.06e-25,120;CL:0000037,1.50e-21,168;CL:0000988,9.13e-20,177;CL:0002032,1.45e-19,161;CL:0000837,1.45e-19,161;CL:0000945,2.08e-17,24;CL:0000826,2.08e-17,24;CL:0000624,5.90e-15,6;CL:0000898,1.74e-08,3;CL:0000623,7.38e-08,3;CL:0000825,7.38e-08,3;CL:0000226,1.84e-07,3;CL:0000842,1.84e-07,3;CL:0000767,2.57e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;2.94e-41;18!CL:0000051;7.98e-32;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.09e-12!102;UBERON:0003061!1.09e-12!102;UBERON:0002193!5.24e-12!112;UBERON:0000178!2.59e-11!15;UBERON:0000179!2.59e-11!15;UBERON:0000463!2.59e-11!15;UBERON:0007023!4.75e-11!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.11e-19;15!UBERON:0000179;5.11e-19;15!UBERON:0000463;5.11e-19;15!UBERON:0002390;1.93e-12;32!UBERON:0002193;9.55e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,5.92e-19,15;UBERON:0000179,5.92e-19,15;UBERON:0000463,5.92e-19,15;UBERON:0004177,1.95e-10,7;UBERON:0005057,1.95e-10,7;UBERON:0002370,4.87e-09,4;UBERON:0005058,4.87e-09,4;UBERON:0009113,4.87e-09,4;UBERON:0003295,4.87e-09,4;UBERON:0005562,4.87e-09,4;UBERON:0002193,3.50e-07,108;UBERON:0002390,6.28e-07,98;UBERON:0003061,6.28e-07,98 | |||
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| ||
|short_description=p5@SYNE1 | |||
}} | }} |
Latest revision as of 06:18, 16 September 2015
Short description: | p5@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SYNE1_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_uc011eez.1_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.14e-52 | 52 |
lymphocyte | 1.85e-51 | 53 |
common lymphoid progenitor | 1.85e-51 | 53 |
mature alpha-beta T cell | 3.16e-41 | 18 |
alpha-beta T cell | 3.16e-41 | 18 |
immature T cell | 3.16e-41 | 18 |
mature T cell | 3.16e-41 | 18 |
immature alpha-beta T cell | 3.16e-41 | 18 |
nongranular leukocyte | 4.22e-31 | 115 |
T cell | 4.74e-31 | 25 |
pro-T cell | 4.74e-31 | 25 |
leukocyte | 7.23e-30 | 136 |
B cell | 9.87e-29 | 14 |
CD8-positive, alpha-beta T cell | 3.34e-26 | 11 |
hematopoietic lineage restricted progenitor cell | 9.06e-25 | 120 |
hematopoietic stem cell | 1.50e-21 | 168 |
hematopoietic cell | 9.13e-20 | 177 |
hematopoietic oligopotent progenitor cell | 1.45e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.45e-19 | 161 |
lymphocyte of B lineage | 2.08e-17 | 24 |
pro-B cell | 2.08e-17 | 24 |
CD4-positive, alpha-beta T cell | 5.90e-15 | 6 |
naive T cell | 1.74e-08 | 3 |
natural killer cell | 7.38e-08 | 3 |
pro-NK cell | 7.38e-08 | 3 |
single nucleate cell | 1.84e-07 | 3 |
mononuclear cell | 1.84e-07 | 3 |
basophil | 2.57e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 5.92e-19 | 15 |
haemolymphatic fluid | 5.92e-19 | 15 |
organism substance | 5.92e-19 | 15 |
hemopoietic organ | 1.95e-10 | 7 |
immune organ | 1.95e-10 | 7 |
thymus | 4.87e-09 | 4 |
hemolymphoid system gland | 4.87e-09 | 4 |
thymic region | 4.87e-09 | 4 |
pharyngeal gland | 4.87e-09 | 4 |
thymus primordium | 4.87e-09 | 4 |
hemolymphoid system | 3.50e-07 | 108 |
hematopoietic system | 6.28e-07 | 98 |
blood island | 6.28e-07 | 98 |