FFCP PHASE1:Hg19::chr8:102504690..102504704,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr8:102504690..102504704,+
|short_description=p3@GRHL2
|description=CAGE_peak_3_at_GRHL2_5end
|association_with_transcript=20bp_to_ENST00000472106_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79977 | |EntrezGene=79977 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2799 | |HGNC=2799 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=20bp_to_ENST00000472106_5end | |||
|cluster_id=chr8:102504690..102504704,+ | |||
|coexpression_cluster_id=C1541 | |||
|description=CAGE_peak_3_at_GRHL2_5end | |||
|id=chr8:102504690..102504704,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.40e-23!254;CL:0002076!8.97e-22!43;CL:0000223!3.86e-16!59;CL:0002368!8.58e-11!13;CL:0002251!1.30e-09!21;CL:0002159!1.51e-07!13;CL:0002202!3.17e-07!9;CL:0002632!3.17e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.44e-20;42!CL:0002251;2.22e-11;20!CL:0002368;4.47e-11;13!CL:0000349;2.50e-09;19!CL:0002159;6.29e-07;14!CL:0002202;7.24e-07;9!CL:0002632;7.24e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,7.07e-25,42;CL:0000066,4.04e-21,253;CL:0000223,4.91e-18,58;CL:0002251,2.99e-11,20;CL:0002368,4.54e-11,13;CL:0000349,2.54e-09,19;CL:0002159,5.86e-07,14;CL:0002202,7.34e-07,9;CL:0002632,7.34e-07,9 | |||
|ontology_enrichment_development_v019=CL:0000223;2.51e-09;58!UBERON:0006595;3.39e-07;86 | |||
|ontology_enrichment_disease=DOID:305!4.05e-18!106;DOID:1749!2.29e-14!14;DOID:299!7.80e-12!25;DOID:0050687!1.16e-11!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.93e-17;14!DOID:299;5.39e-12;25!DOID:5093;1.52e-07;4!DOID:1612;1.52e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.90e-17,14;DOID:305,8.98e-17,106;DOID:299,5.20e-12,25;DOID:0050687,2.09e-10,143;DOID:5093,1.52e-07,4;DOID:1612,1.52e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.07e-26!169;UBERON:0000925!3.07e-26!169;UBERON:0006595!3.07e-26!169;UBERON:0001007!1.68e-19!155;UBERON:0001555!1.68e-19!155;UBERON:0007026!1.68e-19!155;UBERON:0000077!2.42e-16!130;UBERON:0004921!8.93e-16!129;UBERON:0004185!8.93e-16!129;UBERON:0001004!2.70e-14!72;UBERON:0005631!1.06e-13!14;UBERON:0000158!1.06e-13!14;UBERON:0000464!1.52e-13!104;UBERON:0000466!2.04e-11!126;UBERON:0005911!5.66e-11!82;UBERON:0005153!1.79e-10!37;UBERON:0000161!2.82e-10!35;UBERON:0000065!2.96e-10!53;UBERON:0003124!3.10e-10!7;UBERON:0005156!3.35e-10!59;UBERON:0000990!3.35e-10!59;UBERON:0005178!7.81e-10!34;UBERON:0002224!7.81e-10!34;UBERON:0000344!1.86e-09!12;UBERON:0005181!2.24e-09!35;UBERON:0003133!3.28e-09!48;UBERON:0001041!3.72e-09!98;UBERON:0000915!1.52e-08!52;UBERON:0004175!6.17e-08!25;UBERON:0000166!8.52e-08!21;UBERON:0003135!9.48e-08!11;UBERON:0003101!1.25e-07!22;UBERON:0000079!1.25e-07!22;UBERON:0002048!1.52e-07!22;UBERON:0000117!1.52e-07!22;UBERON:0000171!1.52e-07!22;UBERON:0000170!1.52e-07!22;UBERON:0005597!1.52e-07!22;UBERON:0000118!1.52e-07!22;UBERON:0000478!1.54e-07!24;UBERON:0005157!2.32e-07!51;UBERON:0000062!4.89e-07!511;UBERON:0003729!5.89e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;8.75e-11;10!UBERON:0000158;8.75e-11;10!UBERON:0004921;1.15e-09;33!UBERON:0000478;1.42e-09;24!UBERON:0000344;1.56e-09;20!UBERON:0000974;2.62e-09;6!UBERON:0001555;2.87e-08;54!UBERON:0005178;2.92e-08;34!UBERON:0002224;2.92e-08;34!UBERON:0001987;1.19e-07;4!UBERON:0005911;1.35e-07;36!UBERON:0005181;2.30e-07;35!UBERON:0003343;4.03e-07;4!UBERON:0004785;4.03e-07;4!UBERON:0005409;4.49e-07;22!UBERON:0000058;4.65e-07;10!UBERON:0004807;4.76e-07;22!UBERON:0000161;7.23e-07;19!UBERON:0000166;7.23e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.12e-24,160;UBERON:0000925,3.12e-24,160;UBERON:0006595,3.12e-24,160;UBERON:0001007,5.24e-17,145;UBERON:0001555,5.24e-17,145;UBERON:0007026,5.24e-17,145;UBERON:0005631,1.42e-16,14;UBERON:0000158,1.42e-16,14;UBERON:0004921,7.18e-14,118;UBERON:0001004,8.67e-13,74;UBERON:0003124,4.11e-12,7;UBERON:0000161,1.98e-10,36;UBERON:0000478,1.40e-09,24;UBERON:0000344,1.57e-09,20;UBERON:0005156,1.61e-09,59;UBERON:0000990,1.61e-09,59;UBERON:0005178,2.88e-09,34;UBERON:0002224,2.88e-09,34;UBERON:0005911,3.54e-09,82;UBERON:0004175,6.81e-09,25;UBERON:0005181,7.29e-09,35;UBERON:0000915,7.49e-09,52;UBERON:0000065,7.63e-09,54;UBERON:0004923,3.02e-08,66;UBERON:0003133,5.60e-08,48;UBERON:0000166,5.84e-08,22;UBERON:0001987,1.21e-07,4;UBERON:0004340,1.21e-07,4;UBERON:0001041,2.20e-07,87;UBERON:0005153,2.23e-07,37;UBERON:0003343,3.77e-07,4;UBERON:0004785,3.77e-07,4 | |||
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| ||
|short_description=p3@GRHL2 | |||
}} | }} |
Latest revision as of 21:37, 24 September 2015
Short description: | p3@GRHL2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_GRHL2_5end |
Coexpression cluster: | C1541_amniotic_Amniotic_MCF7_Placental_chorionic_oral_acantholytic |
Association with transcript: | 20bp_to_ENST00000472106_5end |
EntrezGene: | GRHL2 |
HGNC: | 2799 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 7.07e-25 | 42 |
epithelial cell | 4.04e-21 | 253 |
endodermal cell | 4.91e-18 | 58 |
epithelial cell of alimentary canal | 2.99e-11 | 20 |
respiratory epithelial cell | 4.54e-11 | 13 |
extraembryonic cell | 2.54e-09 | 19 |
general ecto-epithelial cell | 5.86e-07 | 14 |
epithelial cell of tracheobronchial tree | 7.34e-07 | 9 |
epithelial cell of lower respiratory tract | 7.34e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 3.12e-24 | 160 |
endoderm | 3.12e-24 | 160 |
presumptive endoderm | 3.12e-24 | 160 |
digestive system | 5.24e-17 | 145 |
digestive tract | 5.24e-17 | 145 |
primitive gut | 5.24e-17 | 145 |
extraembryonic membrane | 1.42e-16 | 14 |
membranous layer | 1.42e-16 | 14 |
subdivision of digestive tract | 7.18e-14 | 118 |
respiratory system | 8.67e-13 | 74 |
chorion | 4.11e-12 | 7 |
orifice | 1.98e-10 | 36 |
extraembryonic structure | 1.40e-09 | 24 |
mucosa | 1.57e-09 | 20 |
reproductive structure | 1.61e-09 | 59 |
reproductive system | 1.61e-09 | 59 |
thoracic cavity element | 2.88e-09 | 34 |
thoracic cavity | 2.88e-09 | 34 |
endo-epithelium | 3.54e-09 | 82 |
internal genitalia | 6.81e-09 | 25 |
thoracic segment organ | 7.29e-09 | 35 |
thoracic segment of trunk | 7.49e-09 | 52 |
respiratory tract | 7.63e-09 | 54 |
organ component layer | 3.02e-08 | 66 |
reproductive organ | 5.60e-08 | 48 |
oral opening | 5.84e-08 | 22 |
placenta | 1.21e-07 | 4 |
allantois | 1.21e-07 | 4 |
foregut | 2.20e-07 | 87 |
epithelial bud | 2.23e-07 | 37 |
mucosa of oral region | 3.77e-07 | 4 |
respiratory system mucosa | 3.77e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.90e-17 | 14 |
carcinoma | 8.98e-17 | 106 |
adenocarcinoma | 5.20e-12 | 25 |
cell type cancer | 2.09e-10 | 143 |
thoracic cancer | 1.52e-07 | 4 |
breast cancer | 1.52e-07 | 4 |