FFCP PHASE1:Hg19::chr10:3668228..3668254,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr10:3668228..3668254,- | |||
|description=CAGE_peak_at_chr10:3668228..3668254,- | |||
|id=chr10:3668228..3668254,- | |||
|ontology_enrichment_celltype=CL:0000055!8.88e-10!180;CL:0002541!3.35e-07!3;CL:0002564!3.57e-07!3;CL:0000188!4.08e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002561;6.25e-14;2!CL:0002602;3.94e-13;2!CL:0002537;1.00e-11;5!CL:0002552;1.47e-11;5!CL:0000349;2.19e-11;19!CL:0002540;7.38e-10;6!CL:0002541;1.19e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002561,6.26e-14,2;CL:0002602,2.49e-13,2;CL:0002537,9.32e-12,5;CL:0002552,1.61e-11,5;CL:0000349,2.08e-11,19;CL:0002540,6.64e-10,6;CL:0002541,1.20e-09,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;9.39e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,9.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!9.45e-14!14;UBERON:0000158!9.45e-14!14;UBERON:0000914!5.42e-09!83;UBERON:0002329!5.42e-09!83;UBERON:0003077!5.42e-09!83;UBERON:0003059!5.42e-09!83;UBERON:0007282!5.42e-09!83;UBERON:0009618!5.42e-09!83;UBERON:0007285!5.42e-09!83;UBERON:0000478!1.32e-08!24;UBERON:0000305!6.24e-08!7;UBERON:0003124!1.94e-07!7;UBERON:0000476!3.35e-07!3;UBERON:0000920!3.35e-07!3;UBERON:0002242!3.57e-07!3;UBERON:0003068!3.57e-07!3;UBERON:0002328!3.57e-07!3;UBERON:0004880!3.57e-07!3;UBERON:0004871!7.22e-07!8;UBERON:0001737!7.55e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;4.03e-22;10!UBERON:0000158;4.03e-22;10!UBERON:0000305;2.44e-14;7!UBERON:0005933;6.25e-14;2!UBERON:0005942;6.25e-14;2!UBERON:0005932;6.25e-14;2!UBERON:0006444;3.94e-13;2!UBERON:0001995;3.94e-13;2!UBERON:0004715;3.94e-13;2!UBERON:0011135;1.47e-11;5!UBERON:0002216;1.47e-11;5!UBERON:0011134;1.47e-11;5!UBERON:0002209;1.47e-11;5!UBERON:0002213;1.47e-11;5!UBERON:0007844;1.47e-11;5!UBERON:0011138;1.47e-11;5!UBERON:0001130;1.47e-11;5!UBERON:0001066;1.47e-11;5!UBERON:0001468;1.47e-11;5!UBERON:0004765;8.03e-11;26!UBERON:0001434;2.30e-10;36!UBERON:0003124;1.19e-09;3!UBERON:0000920;1.19e-09;3!UBERON:0000075;3.14e-09;16!UBERON:0002418;4.78e-09;3!UBERON:0004755;4.78e-09;3!UBERON:0000478;6.82e-09;24!UBERON:0002371;1.51e-08;12!UBERON:0007195;6.59e-08;1!UBERON:0004905;2.13e-07;8!UBERON:0000982;2.13e-07;8!UBERON:0001828;2.13e-07;8!UBERON:0004770;2.13e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.10e-15,14;UBERON:0000158,1.10e-15,14;UBERON:0000305,2.20e-14,7;UBERON:0005933,6.26e-14,2;UBERON:0005942,6.26e-14,2;UBERON:0005932,6.26e-14,2;UBERON:0006444,2.49e-13,2;UBERON:0001995,2.49e-13,2;UBERON:0004715,2.49e-13,2;UBERON:0004871,1.32e-12,8;UBERON:0011135,1.12e-11,5;UBERON:0002216,1.12e-11,5;UBERON:0011134,1.12e-11,5;UBERON:0002209,1.12e-11,5;UBERON:0002213,1.12e-11,5;UBERON:0005856,1.12e-11,5;UBERON:0005866,1.12e-11,5;UBERON:0005863,1.12e-11,5;UBERON:0007844,1.12e-11,5;UBERON:0011138,1.12e-11,5;UBERON:0001130,1.12e-11,5;UBERON:0001066,1.12e-11,5;UBERON:0001468,1.12e-11,5;UBERON:0000920,1.20e-09,3;UBERON:0000075,2.75e-09,16;UBERON:0002418,3.52e-09,3;UBERON:0004755,3.52e-09,3;UBERON:0000478,6.54e-09,24;UBERON:0007195,6.59e-08,1;UBERON:0004905,1.80e-07,8;UBERON:0000982,1.80e-07,8;UBERON:0004770,1.80e-07,8;UBERON:0001828,2.25e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,2.18441372130172,0.263766978228454,1.98026164736075,3.31397375727916,0,0,0,0,0,0,0,0,0.136874425072884,1.00434111675842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,1.50401373190767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0.234321431833797,0.312160076830321,0.570471821544449,0,0,0.485618833104395,0.140450806702248,3.0623125688234,2.94802361548243,1.23990937410919,0,0,0,0,1.0100166837244,0.500474079487857,1.93944880838928,0,0,0.600952235626387,0,0,0,0,0,0,0.515281080091258,0,0,0,0,0,0,0,0,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,10.2160944167035,9.38443326170461,0.236613600079688,0,0,0.110293972732394,0,0.237270619111097,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.977424915930974,2.07986957055916,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,4.11531798819427,7.09245660116391,1.5985330740966,0,0,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.736148950314839,0.500170521059677,2.17012018959788,0.207970861530807,0,0,0,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,1.27438136522519,0,0.447749509444357,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,0,0,0,0.154048617114644,0.15350367472613,0.689182862422653,0.322260734604821,0.870100163485371,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0.632758849437452,0.190630193923825,0,0.42793898803392,0,0,1.2591072030832,0.274537029736055,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,0.422215270595328,0,0.75894634753143,2.0996083214699,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.01363417949149,1.48482340416319,5.83605333988541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4478087188028,0,0,0,0,0,0,0,0,1.41832609060762,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,0,0,0,11.1650405906172,0.0915975934018623,12.2597998484286,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0870592065804026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.707082103850386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40963004463334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50313580350515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60011105865261,0,0,0,0,0,0,0.680117776536817,0,0,0,0,0,1.06013487567529,0,0,0,0,0.607719912354764,0,0,0,0,0,0.491545817507439,0,0,0,0,5.67515953566836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,7.20596437044426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.79832133146375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236664001461131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr10:3668228..3668254,- | |||
}} |
Latest revision as of 13:28, 23 July 2015
Short description: | p@chr10:3668228..3668254, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:3668228..3668254, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
outer root sheath cell | 6.26e-14 | 2 |
annulus pulposus cell | 2.49e-13 | 2 |
amnion mesenchymal stem cell | 9.32e-12 | 5 |
fibroblast of gingiva | 1.61e-11 | 5 |
extraembryonic cell | 2.08e-11 | 19 |
mesenchymal stem cell of the bone marrow | 6.64e-10 | 6 |
chorionic membrane mesenchymal stem cell | 1.20e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.10e-15 | 14 |
membranous layer | 1.10e-15 | 14 |
amnion | 2.20e-14 | 7 |
hair root sheath | 6.26e-14 | 2 |
hair outer root sheath | 6.26e-14 | 2 |
bulb of hair follicle | 6.26e-14 | 2 |
annulus fibrosus | 2.49e-13 | 2 |
fibrocartilage | 2.49e-13 | 2 |
annulus fibrosus disci intervertebralis | 2.49e-13 | 2 |
somatic layer of lateral plate mesoderm | 1.32e-12 | 8 |
intervertebral cartilage | 1.12e-11 | 5 |
symphysis | 1.12e-11 | 5 |
nonsynovial joint | 1.12e-11 | 5 |
fibrous joint | 1.12e-11 | 5 |
cartilaginous joint | 1.12e-11 | 5 |
developing mesenchymal condensation | 1.12e-11 | 5 |
pre-cartilage condensation | 1.12e-11 | 5 |
cartilaginous condensation | 1.12e-11 | 5 |
cartilage element | 1.12e-11 | 5 |
post-cranial axial skeletal system | 1.12e-11 | 5 |
vertebral column | 1.12e-11 | 5 |
intervertebral disk | 1.12e-11 | 5 |
intervertebral joint | 1.12e-11 | 5 |
egg chorion | 1.20e-09 | 3 |
subdivision of skeletal system | 2.75e-09 | 16 |
cartilage tissue | 3.52e-09 | 3 |
skeletal tissue | 3.52e-09 | 3 |
extraembryonic structure | 6.54e-09 | 24 |
stroma of bone marrow | 6.59e-08 | 1 |
articulation | 1.80e-07 | 8 |
skeletal joint | 1.80e-07 | 8 |
articular system | 1.80e-07 | 8 |
gingiva | 2.25e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 9.10e-08 | 1 |