FFCP PHASE1:Hg19::chr8:116681123..116681143,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:116681123..116681143,-
|short_description=p4@TRPS1
|description=CAGE_peak_4_at_TRPS1_5end
|association_with_transcript=0bp_to_ENST00000519674_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7227 | |EntrezGene=7227 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12340 | |HGNC=12340 | ||
|TSSclassifier=strong | |||
|UniProt=E5RJ97 | |UniProt=E5RJ97 | ||
|association_with_transcript=0bp_to_ENST00000519674_5end | |||
|cluster_id=chr8:116681123..116681143,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_4_at_TRPS1_5end | |||
|id=chr8:116681123..116681143,- | |||
|ontology_enrichment_celltype=CL:0000557!8.11e-26!71;CL:0002057!2.56e-25!42;CL:0002009!6.76e-25!65;CL:0000766!2.39e-24!76;CL:0000839!3.68e-24!70;CL:0002194!9.50e-24!63;CL:0000576!9.50e-24!63;CL:0000040!9.50e-24!63;CL:0000559!9.50e-24!63;CL:0000860!2.94e-21!45;CL:0000738!5.49e-19!140;CL:0002031!2.39e-17!124;CL:0002087!8.87e-17!119;CL:0000763!3.33e-16!112;CL:0000049!3.33e-16!112;CL:0000037!1.29e-13!172;CL:0000566!1.29e-13!172;CL:0002032!5.41e-13!165;CL:0000837!5.41e-13!165;CL:0000988!1.70e-12!182;CL:0000134!7.71e-10!358;CL:0002320!3.50e-09!365;CL:0000048!1.44e-08!430;CL:0000723!7.96e-08!436;CL:0000034!3.52e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.22e-24;33!CL:0002057;5.22e-24;33!CL:0000473;1.86e-20;39!CL:0000234;1.86e-20;39!CL:0000576;2.60e-20;48!CL:0000766;9.66e-15;69!CL:0002087;1.67e-07;104!CL:0000763;9.84e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,8.54e-33,67;CL:0002009,4.64e-32,61;CL:0000766,4.93e-31,72;CL:0002194,1.12e-30,59;CL:0000576,1.12e-30,59;CL:0000040,1.12e-30,59;CL:0000559,1.12e-30,59;CL:0000839,1.84e-30,66;CL:0000473,7.95e-30,48;CL:0000234,7.95e-30,48;CL:0000860,2.38e-29,42;CL:0002057,2.38e-29,42;CL:0000738,1.95e-24,136;CL:0002031,8.13e-23,120;CL:0002087,4.40e-22,115;CL:0000763,6.55e-21,108;CL:0000049,6.55e-21,108;CL:0000037,5.88e-18,168;CL:0002032,2.09e-17,161;CL:0000837,2.09e-17,161;CL:0000988,2.55e-17,177;CL:0000134,3.11e-13,354;CL:0002320,4.01e-12,361;CL:0000048,3.35e-11,427;CL:0000723,1.38e-10,433;CL:0000034,5.58e-10,441;CL:0000219,1.09e-08,386 | |||
|ontology_enrichment_development_v019=CL:0002057;2.43e-21;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!8.01e-24!102;UBERON:0003061!8.01e-24!102;UBERON:0002371!3.15e-23!80;UBERON:0001474!3.39e-21!86;UBERON:0002193!2.57e-18!112;UBERON:0004765!2.88e-17!101;UBERON:0001434!2.88e-17!101;UBERON:0002204!9.78e-14!167;UBERON:0002405!3.25e-11!115;UBERON:0003081!1.82e-10!216;UBERON:0002384!4.91e-09!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.09e-29,98;UBERON:0003061,3.09e-29,98;UBERON:0002371,4.29e-29,76;UBERON:0001474,2.23e-26,82;UBERON:0002193,6.44e-24,108;UBERON:0004765,1.06e-21,90;UBERON:0002405,5.67e-21,93;UBERON:0001434,3.47e-18,100;UBERON:0003081,2.45e-17,203;UBERON:0000926,2.40e-13,315;UBERON:0004120,2.40e-13,315;UBERON:0006603,2.40e-13,315;UBERON:0002204,2.28e-12,167;UBERON:0002384,6.32e-12,371 | |||
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| ||
|short_description=p4@TRPS1 | |||
}} | }} |
Latest revision as of 06:38, 25 September 2015
Short description: | p4@TRPS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRPS1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 0bp_to_ENST00000519674_5end |
EntrezGene: | TRPS1 |
HGNC: | 12340 |
UniProt: | E5RJ97 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 8.54e-33 | 67 |
macrophage dendritic cell progenitor | 4.64e-32 | 61 |
myeloid leukocyte | 4.93e-31 | 72 |
monopoietic cell | 1.12e-30 | 59 |
monocyte | 1.12e-30 | 59 |
monoblast | 1.12e-30 | 59 |
promonocyte | 1.12e-30 | 59 |
myeloid lineage restricted progenitor cell | 1.84e-30 | 66 |
defensive cell | 7.95e-30 | 48 |
phagocyte | 7.95e-30 | 48 |
classical monocyte | 2.38e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.38e-29 | 42 |
leukocyte | 1.95e-24 | 136 |
hematopoietic lineage restricted progenitor cell | 8.13e-23 | 120 |
nongranular leukocyte | 4.40e-22 | 115 |
myeloid cell | 6.55e-21 | 108 |
common myeloid progenitor | 6.55e-21 | 108 |
hematopoietic stem cell | 5.88e-18 | 168 |
hematopoietic oligopotent progenitor cell | 2.09e-17 | 161 |
hematopoietic multipotent progenitor cell | 2.09e-17 | 161 |
hematopoietic cell | 2.55e-17 | 177 |
mesenchymal cell | 3.11e-13 | 354 |
connective tissue cell | 4.01e-12 | 361 |
multi fate stem cell | 3.35e-11 | 427 |
somatic stem cell | 1.38e-10 | 433 |
stem cell | 5.58e-10 | 441 |
motile cell | 1.09e-08 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.09e-29 | 98 |
blood island | 3.09e-29 | 98 |
bone marrow | 4.29e-29 | 76 |
bone element | 2.23e-26 | 82 |
hemolymphoid system | 6.44e-24 | 108 |
skeletal element | 1.06e-21 | 90 |
immune system | 5.67e-21 | 93 |
skeletal system | 3.47e-18 | 100 |
lateral plate mesoderm | 2.45e-17 | 203 |
mesoderm | 2.40e-13 | 315 |
mesoderm-derived structure | 2.40e-13 | 315 |
presumptive mesoderm | 2.40e-13 | 315 |
musculoskeletal system | 2.28e-12 | 167 |
connective tissue | 6.32e-12 | 371 |