FFCP PHASE1:Hg19::chr11:3002646..3002648,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr11:3002646..3002648,- | |||
|description=CAGE_peak_at_chr11:3002646..3002648,- | |||
|id=chr11:3002646..3002648,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.13e-12;18!CL:0000789;5.13e-12;18!CL:0002419;5.13e-12;18!CL:0000625;2.07e-11;11!CL:0000084;1.01e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,4.71e-12,18;CL:0000789,4.71e-12,18;CL:0002420,4.71e-12,18;CL:0002419,4.71e-12,18;CL:0000790,4.71e-12,18;CL:0000625,1.96e-11,11;CL:0000084,9.53e-09,25;CL:0000827,9.53e-09,25 | |||
|ontology_enrichment_development_v019=CL:0000790;5.13e-12;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.90e-09!57;UBERON:0005068!3.90e-09!57;UBERON:0006241!3.90e-09!57;UBERON:0007135!3.90e-09!57;UBERON:0000073!1.72e-08!94;UBERON:0001016!1.72e-08!94;UBERON:0002780!6.28e-08!41;UBERON:0001890!6.28e-08!41;UBERON:0006240!6.28e-08!41;UBERON:0003080!1.55e-07!42;UBERON:0002020!2.94e-07!34;UBERON:0003528!2.94e-07!34;UBERON:0007023!3.79e-07!115;UBERON:0002616!6.74e-07!59;UBERON:0005743!7.06e-07!86;UBERON:0002346!7.14e-07!90;UBERON:0001017!9.58e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002038;6.21e-15;1!UBERON:0009661;6.21e-15;1!UBERON:0002950;6.21e-15;1!UBERON:0001891;6.21e-15;1!UBERON:0002791;2.98e-09;32!UBERON:0009663;1.34e-08;7!UBERON:0001893;1.80e-08;34!UBERON:0003528;4.17e-08;34!UBERON:0002020;4.17e-08;34!UBERON:0001875;6.35e-08;2!UBERON:0006514;6.35e-08;2!UBERON:0002780;4.24e-07;41!UBERON:0001890;4.24e-07;41!UBERON:0002420;7.10e-07;9!UBERON:0000125;7.10e-07;9!UBERON:0007245;7.10e-07;9!UBERON:0002308;7.10e-07;9!UBERON:0010009;7.10e-07;9!UBERON:0010011;7.10e-07;9!UBERON:0000454;7.10e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002038,6.22e-15,1;UBERON:0009661,6.22e-15,1;UBERON:0002950,6.22e-15,1;UBERON:0001891,6.22e-15,1;UBERON:0009616,6.22e-15,1;UBERON:0010286,6.22e-15,1;UBERON:0002791,4.93e-10,32;UBERON:0003528,1.86e-09,34;UBERON:0002020,1.86e-09,34;UBERON:0001893,1.86e-09,34;UBERON:0009663,1.47e-08,7;UBERON:0002780,7.21e-08,41;UBERON:0001890,7.21e-08,41;UBERON:0003080,7.21e-08,41;UBERON:0006240,7.21e-08,41;UBERON:0001875,7.52e-08,2;UBERON:0006514,7.52e-08,2;UBERON:0002420,7.64e-07,9;UBERON:0000125,7.64e-07,9;UBERON:0007245,7.64e-07,9;UBERON:0002308,7.64e-07,9;UBERON:0010009,7.64e-07,9;UBERON:0010011,7.64e-07,9;UBERON:0000454,7.64e-07,9 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,1.38096903554283,0.382067028739756,0.328402357799783,0.550975469195755,0,0.383829398097213,0,0,0,0,0.0774672005803016,0,0,0.553995408531877,0,0.217010870715852,0.223915474239924,0.971680998056939,0,0,0,0,0.232429036905685,0,0,0,0.256160706529101,0,0.344745680736619,0,0,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0.112328631146495,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590129310341499,0,1.43921049299656,0,0.32592226663359,0,0,0.111410456885174,0.883817722424512,0,0.541607727530031,0.25618263945135,0.520237390239513,0.164437904603676,0,0.289803085735052,0.296573126324121,0.267540828089713,0,0,0,0,0.506039384039006,0,0,0.950452044448374,0,0.127986611154418,1.24930726552346,0,1.64225599384209,0.80642697289893,0.534880391567015,1.30341963494519,0,0,0,0,0,0,0,0,0,0,0.614843499851882,0.196468613246569,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0.775250277507987,0,0,0.402829317109147,0,0,0.367663080345869,0,0.17859945656816,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.408308342509787,0.368502951935304,0.206651562351531,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0.179389635688862,0,0,0,0.103052529238439,0.257640540045629,0,0.337552664482532,0,0,0.0920498986422993,0,0,0,0,0,0.272746120590835,0,0.121973706129595,0,0,0,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0.122988438543114,0,0,0,0.201057944823262,0.0925884451585296,0,0,0,0.231860809950154,0,0,0,0.190254152234598,0,0,0.246217006087397,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0,0.12624243342638,0.190493682876507,0,0,0,0.102827492703324,0,0.571652865261156,0,0,0.22001485746285,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.784596007954691,0.788123040807709,0.215627574859517,0.77005821767849,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0.206768026122887,0.647142602455851,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.362578348774867,0,0.276242966807689,0.459257792658427,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0.256450125116389,0,0,0.103041011647722,0,0.495056999523528,0,0,0,0,0,0,0,0,0.290033387828457,0.255679882248303,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.658589785919804,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0.714695326373367,0.411362273086194,0,0,0,0.106824071127473,0,0,0.185803175125719,0,0.497992903438899,0,0.199579371432817,0,0,0.324621940274555,0.280797178113459,0,0.156679895773023,0,0,0,0,0.425846237690326,0,0,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0.557216921387392,0,0,0,0,0,0.562677665642051,0,0.16480387422676,0.63337622438398,0.597743964753209,0.276283915531148,0.251932747854276,0,0,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0.0927680981618513,0,0,0.174919999992391,0,0.1137934482855,0,0,0.344743373241465,0,0.347249989866585,0,0.241192877250816,0,0.552896299656123,0.295547618953547,0.219385397153973,0.10893846351899,0,0.153900517007594,0.113942055847001,0.23056390438806,0.0897576444097721,0.325942115766024,0,0.0915975934018623,0,0,1.56980256395025,0.332423363800313,0.451191321234361,0.19606253431774,0.167821586975843,0.189753732724185,0,0,0,0.424059214301822,0,0,0.265372693510018,0,0,0.247127877893006,0.104421949505455,0.134802265961354,0,0.702793337176017,0.729819156862664,0,0.242780379534093,0,3.62972148145992,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.195984794828755,0.174118413160805,0,0.171986032471617,0,0.292357268344742,0.0821154570532092,0.193978032976839,0,0,0.137041924646751,0,0.126621591911757,0,0.160317640503067,0.213452994739353,0,0,0,0.171594997861965,0,0.124252535565433,0,0.135904206073614,0.313808538937,0,0,0,1.23214841002794,0,0.429765441419957,0.525774708558629,0,0,0,0.399358000997982,0,0,0.0671834724867263,0.360299883542404,1.16495949527454,0.0787831823072236,0,0.13480708770837,0,0.0846733320657845,0.795229689809303,0.272406812223151,0,0.137539436597234,0,0.2249738915515,0,0,0.670869375198532,0.0788057072991982,0.104909176269996,0,0,0,0,0,0.25426853765475,0,0,0,0,0.246277562248017,0,0.113312091520126,0,0,0.517131825446202,0.52893040697076,0.171086837884329,0,0.213574825135389,0,0.414239055347196,0.496166021811951,0.197611631897944,0.487170393523584,0,0.544017803369474,0,0,0,0.314108192500469,0,0,0.250381861413,0,0.998361463831671,0.0620964029413835,0,0.249960815924213,0,0.285465333544967,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0.464033759878494,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0.138258436151731,0.779441235357554,0.132864840313363,0,0,0,0.211312123358627,0,0,0,0,0,0.279759015438889,0,0.255788742607303,0.107824811396682,0.314531883711793,0.873677105536111,0.509197589862076,0.425149840203366,0.991486114072017,0.558644917973244,0,0,0,0,0,0.192687675289379,0,0.478901577171454,0,0.756215088665154,0.0691572524642179,0,0,0.0981477185010256,0.235939446695481,0,0.115525666150338,0,0,0.198916222116275,0.0752103283492573,0.60511520611056,0,0.785720083444267,0,0,0,0,0.206686796501184,0.19024743058172,1.09394961803644,0,0.496211178389294,0,0.127762427639595,0.535701835878287,0,0.606965604236632,0.455324382702595,0.0887023701626388,0,0.342976018874837,0.135939465953663,0.131545547125698,0,0.222462803784138,0.235479278551542,0.157115589916002,0.280272163313789,3.65263488203798,0,0,0.285906176706625,0.47404083519818,0.348724276104376,0,0,0,0,0,0,0.354996002191696,0.0852134047591577,0,0.22910686854405,0.31020638566432,1.91107787795487,0.111855431797792,0,0,0,0.102662806856247,0,0.485710993059139,0.233939463462106,0.795803100645473,0,0.11294608203896,0.219881033490858,0,0.0771741581079447,0.218559560503957,0,0.735444965261716,0,0.392616934229891,0,0.8453114551668,0.169927114687817,0,0.0644578879735772,0.199882311849858,0.178553938605658,0.352894871715692,0,0,0.458729283404541,2.29343333042322,0.315543124386369,0.0679914901909147,1.74540276136151,0,0,0,0,0.378499274505237,0.109265571963696,0.633492505057185,0.305966489225945,0,0.18378979906969,0,0,0.535928260312357,0,0.827463966895162,0,0,0,0.434523000071005,0.33639558774184,0,0.404234377916439,0.217716747896961,0,0.336760265072938,0.215166616178029,0.665320713092027,0.0814032686109745,0.213454691755431,0,0,0,0,0.406896178315738,0,0.201273793591026,0.320568492303233 | |||
|short_description=p@chr11:3002646..3002648,- | |||
}} |
Latest revision as of 21:24, 23 July 2015
Short description: | p@chr11:3002646..3002648, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:3002646..3002648, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 4.71e-12 | 18 |
alpha-beta T cell | 4.71e-12 | 18 |
immature T cell | 4.71e-12 | 18 |
mature T cell | 4.71e-12 | 18 |
immature alpha-beta T cell | 4.71e-12 | 18 |
CD8-positive, alpha-beta T cell | 1.96e-11 | 11 |
T cell | 9.53e-09 | 25 |
pro-T cell | 9.53e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
substantia nigra | 6.22e-15 | 1 |
midbrain nucleus | 6.22e-15 | 1 |
regional part of midbrain | 6.22e-15 | 1 |
midbrain | 6.22e-15 | 1 |
presumptive midbrain | 6.22e-15 | 1 |
midbrain neural tube | 6.22e-15 | 1 |
regional part of telencephalon | 4.93e-10 | 32 |
brain grey matter | 1.86e-09 | 34 |
gray matter | 1.86e-09 | 34 |
telencephalon | 1.86e-09 | 34 |
telencephalic nucleus | 1.47e-08 | 7 |
regional part of forebrain | 7.21e-08 | 41 |
forebrain | 7.21e-08 | 41 |
anterior neural tube | 7.21e-08 | 41 |
future forebrain | 7.21e-08 | 41 |
globus pallidus | 7.52e-08 | 2 |
pallidum | 7.52e-08 | 2 |
basal ganglion | 7.64e-07 | 9 |
neural nucleus | 7.64e-07 | 9 |
nuclear complex of neuraxis | 7.64e-07 | 9 |
nucleus of brain | 7.64e-07 | 9 |
aggregate regional part of brain | 7.64e-07 | 9 |
collection of basal ganglia | 7.64e-07 | 9 |
cerebral subcortex | 7.64e-07 | 9 |