FFCP PHASE1:Hg19::chr8:145065457..145065489,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr8:145065457..145065489,+
|short_description=p6@GRINA
|description=CAGE_peak_6_at_GRINA_5end
|association_with_transcript=0bp_to_ENST00000531992_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2907 | |EntrezGene=2907 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4589 | |HGNC=4589 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000531992_5end | |||
|cluster_id=chr8:145065457..145065489,+ | |||
|coexpression_cluster_id=C2920 | |||
|description=CAGE_peak_6_at_GRINA_5end | |||
|id=chr8:145065457..145065489,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.39e-12!42;CL:0000766!1.67e-11!76;CL:0000860!1.09e-10!45;CL:0002194!1.18e-09!63;CL:0000576!1.18e-09!63;CL:0000040!1.18e-09!63;CL:0000559!1.18e-09!63;CL:0002009!3.95e-09!65;CL:0000839!1.71e-08!70;CL:0000557!2.53e-08!71 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.12e-13;33!CL:0002057;1.12e-13;33!CL:0000473;6.02e-12;39!CL:0000234;6.02e-12;39!CL:0000576;1.57e-08;48!CL:0000766;5.51e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.93e-13,48;CL:0000234,1.93e-13,48;CL:0000766,5.67e-13,72;CL:0000860,3.34e-12,42;CL:0002057,3.34e-12,42;CL:0002194,5.35e-11,59;CL:0000576,5.35e-11,59;CL:0000040,5.35e-11,59;CL:0000559,5.35e-11,59;CL:0002009,2.73e-10,61;CL:0000839,9.14e-10,66;CL:0000557,1.20e-09,67 | |||
|ontology_enrichment_development_v019=CL:0002057;2.52e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!1.40e-12!659;UBERON:0000467!4.00e-11!625;UBERON:0000480!6.81e-11!626;UBERON:0000923!1.16e-10!604;UBERON:0005291!1.16e-10!604;UBERON:0006598!1.16e-10!604;UBERON:0002532!1.16e-10!604;UBERON:0007023!1.17e-10!115;UBERON:0002050!1.92e-10!605;UBERON:0005423!1.92e-10!605;UBERON:0000922!4.16e-10!612;UBERON:0003081!2.29e-08!216;UBERON:0002193!6.82e-08!112;UBERON:0002390!2.36e-07!102;UBERON:0003061!2.36e-07!102;UBERON:0002371!4.95e-07!80 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,6.12e-12,315;UBERON:0004120,6.12e-12,315;UBERON:0006603,6.12e-12,315;UBERON:0000923,3.56e-11,560;UBERON:0010316,3.56e-11,560;UBERON:0005291,3.56e-11,560;UBERON:0006598,3.56e-11,560;UBERON:0010317,3.56e-11,560;UBERON:0002532,3.56e-11,560;UBERON:0002050,8.43e-11,564;UBERON:0003081,1.43e-10,203;UBERON:0007023,2.12e-10,114;UBERON:0005423,2.10e-09,581;UBERON:0002193,5.06e-09,108;UBERON:0002390,1.76e-08,98;UBERON:0003061,1.76e-08,98;UBERON:0000922,2.12e-08,592;UBERON:0002405,2.81e-08,93;UBERON:0002371,2.92e-08,76;UBERON:0001474,1.39e-07,82;UBERON:0001434,2.77e-07,100;UBERON:0004765,3.63e-07,90 | |||
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| ||
|short_description=p6@GRINA | |||
}} | }} |
Latest revision as of 00:16, 17 September 2015
Short description: | p6@GRINA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GRINA_5end |
Coexpression cluster: | C2920_liver_Mesenchymal_Neutrophils_Osteoblast_Melanocyte_testis_CD14 |
Association with transcript: | 0bp_to_ENST00000531992_5end |
EntrezGene: | GRINA |
HGNC: | 4589 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.93e-13 | 48 |
phagocyte | 1.93e-13 | 48 |
myeloid leukocyte | 5.67e-13 | 72 |
classical monocyte | 3.34e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.34e-12 | 42 |
monopoietic cell | 5.35e-11 | 59 |
monocyte | 5.35e-11 | 59 |
monoblast | 5.35e-11 | 59 |
promonocyte | 5.35e-11 | 59 |
macrophage dendritic cell progenitor | 2.73e-10 | 61 |
myeloid lineage restricted progenitor cell | 9.14e-10 | 66 |
granulocyte monocyte progenitor cell | 1.20e-09 | 67 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 6.12e-12 | 315 |
mesoderm-derived structure | 6.12e-12 | 315 |
presumptive mesoderm | 6.12e-12 | 315 |
germ layer | 3.56e-11 | 560 |
germ layer / neural crest | 3.56e-11 | 560 |
embryonic tissue | 3.56e-11 | 560 |
presumptive structure | 3.56e-11 | 560 |
germ layer / neural crest derived structure | 3.56e-11 | 560 |
epiblast (generic) | 3.56e-11 | 560 |
embryonic structure | 8.43e-11 | 564 |
lateral plate mesoderm | 1.43e-10 | 203 |
adult organism | 2.12e-10 | 114 |
developing anatomical structure | 2.10e-09 | 581 |
hemolymphoid system | 5.06e-09 | 108 |
hematopoietic system | 1.76e-08 | 98 |
blood island | 1.76e-08 | 98 |
embryo | 2.12e-08 | 592 |
immune system | 2.81e-08 | 93 |
bone marrow | 2.92e-08 | 76 |
bone element | 1.39e-07 | 82 |
skeletal system | 2.77e-07 | 100 |
skeletal element | 3.63e-07 | 90 |