FFCP PHASE1:Hg19::chr1:183622379..183622388,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=403314 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32152 | |||
|TSSclassifier=strong | |||
|UniProt=Q8WW27 | |||
|association_with_transcript=59bp_to_ENST00000308641,NM_203454,uc001gqn.2_5end | |||
|cluster_id=chr1:183622379..183622388,- | |||
|coexpression_cluster_id=C81 | |||
|description=CAGE_peak_4_at_APOBEC4_5end | |||
|id=chr1:183622379..183622388,- | |||
|ontology_enrichment_celltype=CL:0000624!6.74e-10!6;CL:0000838!1.42e-09!52;CL:0000542!2.32e-09!53;CL:0000051!2.32e-09!53;CL:0000791!3.51e-08!18;CL:0000789!3.51e-08!18;CL:0002420!3.51e-08!18;CL:0002419!3.51e-08!18;CL:0000790!3.51e-08!18;CL:0000810!1.06e-07!1;CL:0000895!1.06e-07!1;CL:0002436!1.06e-07!1;CL:0002427!1.06e-07!1;CL:0002428!1.06e-07!1;CL:0002429!1.06e-07!1;CL:0002433!1.06e-07!1;CL:0002431!1.06e-07!1;CL:0002432!1.06e-07!1 | |||
|ontology_enrichment_celltype_v019=CL:0000895;2.55e-98;1!CL:0000898;5.96e-34;3!CL:0000624;9.07e-18;6!CL:0000791;7.60e-07;18!CL:0000789;7.60e-07;18!CL:0002419;7.60e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000810,2.55e-98,1;CL:0000895,2.55e-98,1;CL:0002436,2.55e-98,1;CL:0002427,2.55e-98,1;CL:0002428,2.55e-98,1;CL:0002429,2.55e-98,1;CL:0002433,2.55e-98,1;CL:0002431,2.55e-98,1;CL:0002432,2.55e-98,1;CL:0000893,4.52e-50,2;CL:0002489,4.52e-50,2;CL:0000809,4.52e-50,2;CL:0000808,4.52e-50,2;CL:0000894,4.52e-50,2;CL:0000806,4.52e-50,2;CL:0000807,4.52e-50,2;CL:0000805,4.52e-50,2;CL:0002425,4.52e-50,2;CL:0000898,5.96e-34,3;CL:0000624,9.07e-18,6;CL:0000791,7.60e-07,18;CL:0000789,7.60e-07,18;CL:0002420,7.60e-07,18;CL:0002419,7.60e-07,18;CL:0000790,7.60e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002427;2.55e-98;1!CL:0002425;4.52e-50;2!CL:0000790;7.60e-07;18 | |||
|ontology_enrichment_disease=DOID:2355!4.34e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003127!1.15e-13!2;UBERON:0000341!2.55e-13!2;UBERON:0000974!7.01e-10!10;UBERON:0002171!1.97e-07!1;UBERON:0006518!1.97e-07!1;UBERON:0008949!1.97e-07!1;UBERON:0000101!1.97e-07!1;UBERON:0002167!1.97e-07!1;UBERON:0001154!2.67e-07!1;UBERON:0001153!2.67e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0003127;2.74e-50;2!UBERON:0003126;1.65e-15;7!UBERON:0001005;1.65e-15;7!UBERON:0007196;5.55e-08;15!UBERON:0001558;5.55e-08;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003127,2.74e-50,2;UBERON:0002370,7.14e-26,4;UBERON:0005058,7.14e-26,4;UBERON:0009113,7.14e-26,4;UBERON:0003295,7.14e-26,4;UBERON:0005562,7.14e-26,4;UBERON:0003351,9.07e-18,6;UBERON:0003126,1.65e-15,7;UBERON:0001005,1.65e-15,7;UBERON:0004177,1.91e-15,7;UBERON:0005057,1.91e-15,7;UBERON:0000974,3.02e-11,10;UBERON:0003408,3.02e-11,10;UBERON:0001042,3.02e-11,10;UBERON:0009145,3.02e-11,10;UBERON:0006562,2.37e-10,11;UBERON:0009722,2.37e-10,11;UBERON:0007690,2.37e-10,11;UBERON:0000072,1.08e-09,47;UBERON:0000065,1.34e-08,54;UBERON:0007196,5.55e-08,15;UBERON:0001558,5.55e-08,15;UBERON:0008814,7.60e-07,18 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0.590129310341499,0,0.411202997999018,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741432815810302,0.267540828089713,0,0,1.14966148080576,0.34362744548263,0.759059076058509,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0.251932747854276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320362237703084,0.471612915298998,0.414239055347196,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0,0,0,0,0,0.451261970095544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0,0,0.154348316215889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,0.267964130156178,0,0,0.426467963801962,0.476128862927481,0,0,0,0,0,0,0,0,2.79716601031438,0.665320713092027,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@APOBEC4 | |||
}} |
Latest revision as of 03:56, 19 September 2015
Short description: | p4@APOBEC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_APOBEC4_5end |
Coexpression cluster: | C81_trachea_salivary_throat_aorta_eye_submaxillary_parotid |
Association with transcript: | 59bp_to_ENST00000308641, NM_203454, uc001gqn.2_5end |
EntrezGene: | APOBEC4 |
HGNC: | 32152 |
UniProt: | Q8WW27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta thymocyte | 2.55e-98 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 2.55e-98 | 1 |
mature CD4 single-positive thymocyte | 2.55e-98 | 1 |
resting double-positive thymocyte | 2.55e-98 | 1 |
double-positive blast | 2.55e-98 | 1 |
CD69-positive double-positive thymocyte | 2.55e-98 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 2.55e-98 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 2.55e-98 | 1 |
CD24-positive, CD4 single-positive thymocyte | 2.55e-98 | 1 |
thymocyte | 4.52e-50 | 2 |
double negative thymocyte | 4.52e-50 | 2 |
double-positive, alpha-beta thymocyte | 4.52e-50 | 2 |
DN4 thymocyte | 4.52e-50 | 2 |
DN1 thymic pro-T cell | 4.52e-50 | 2 |
DN2 thymocyte | 4.52e-50 | 2 |
DN3 thymocyte | 4.52e-50 | 2 |
immature single positive thymocyte | 4.52e-50 | 2 |
early T lineage precursor | 4.52e-50 | 2 |
naive T cell | 5.96e-34 | 3 |
CD4-positive, alpha-beta T cell | 9.07e-18 | 6 |
mature alpha-beta T cell | 7.60e-07 | 18 |
alpha-beta T cell | 7.60e-07 | 18 |
immature T cell | 7.60e-07 | 18 |
mature T cell | 7.60e-07 | 18 |
immature alpha-beta T cell | 7.60e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
open tracheal system trachea | 2.74e-50 | 2 |
thymus | 7.14e-26 | 4 |
hemolymphoid system gland | 7.14e-26 | 4 |
thymic region | 7.14e-26 | 4 |
pharyngeal gland | 7.14e-26 | 4 |
thymus primordium | 7.14e-26 | 4 |
pharyngeal epithelium | 9.07e-18 | 6 |
trachea | 1.65e-15 | 7 |
respiratory airway | 1.65e-15 | 7 |
hemopoietic organ | 1.91e-15 | 7 |
immune organ | 1.91e-15 | 7 |
neck | 3.02e-11 | 10 |
gland of gut | 3.02e-11 | 10 |
chordate pharynx | 3.02e-11 | 10 |
pharyngeal region of foregut | 3.02e-11 | 10 |
pharynx | 2.37e-10 | 11 |
entire pharyngeal arch endoderm | 2.37e-10 | 11 |
early pharyngeal endoderm | 2.37e-10 | 11 |
segment of respiratory tract | 1.08e-09 | 47 |
respiratory tract | 1.34e-08 | 54 |
tracheobronchial tree | 5.55e-08 | 15 |
lower respiratory tract | 5.55e-08 | 15 |
pharyngeal arch system | 7.60e-07 | 18 |