FFCP PHASE1:Hg19::chr3:147112699..147112713,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr3:147112699..147112713,- | |||
|coexpression_cluster_id=C368 | |||
|description=CAGE_peak_at_chr3:147112699..147112713,- | |||
|id=chr3:147112699..147112713,- | |||
|ontology_enrichment_celltype=CL:0000128!3.55e-16!7;CL:0000126!3.55e-16!7;CL:0000127!3.55e-16!7;CL:0002453!3.55e-16!7;CL:0002559!7.73e-14!4;CL:0000346!4.49e-11!3;CL:1000428!4.49e-11!3;CL:0000708!8.04e-11!3;CL:0002603!8.04e-11!3;CL:0000064!1.84e-10!3;CL:0005012!1.84e-10!3;CL:0000067!1.84e-10!3;CL:0002304!1.84e-10!3;CL:0002590!2.45e-10!3;CL:0002605!6.60e-10!3;CL:0000133!1.21e-09!59;CL:0000221!1.50e-08!71;CL:0000333!3.25e-08!41;CL:0002575!4.65e-08!2;CL:0002549!9.90e-08!2 | |||
|ontology_enrichment_celltype_v019=CL:0000346;3.47e-38;3!CL:1000428;3.47e-38;3!CL:0002603;2.03e-37;3!CL:0002575;1.29e-26;2!CL:0002549;1.74e-25;2!CL:0002559;3.22e-23;5!CL:0000708;9.13e-18;3!CL:0000128;1.87e-16;7!CL:0000126;1.87e-16;7!CL:0000127;1.87e-16;7!CL:0000669;8.06e-14;4!CL:0000243;4.19e-07;15!CL:0000125;4.19e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,2.70e-38,3;CL:1000428,2.70e-38,3;CL:0002603,2.60e-37,3;CL:0002575,1.29e-26,2;CL:0002549,2.37e-25,2;CL:0002559,2.77e-23,5;CL:0000708,9.94e-18,3;CL:0000128,2.07e-16,7;CL:0000126,2.07e-16,7;CL:0000127,2.07e-16,7;CL:0002453,2.07e-16,7;CL:0000669,8.06e-14,4;CL:0000333,1.46e-13,41;CL:0000133,3.44e-12,59;CL:0000221,6.62e-10,72;CL:0000243,4.37e-07,15;CL:0000125,4.37e-07,15;CL:0000030,4.37e-07,15;CL:0000339,4.37e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000339;4.19e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002616!9.23e-33!59;UBERON:0005743!3.20e-29!86;UBERON:0001017!4.98e-29!82;UBERON:0000955!1.65e-26!69;UBERON:0006238!1.65e-26!69;UBERON:0000073!1.07e-25!94;UBERON:0001016!1.07e-25!94;UBERON:0003075!1.71e-25!86;UBERON:0007284!1.71e-25!86;UBERON:0002346!5.18e-24!90;UBERON:0001049!1.01e-23!57;UBERON:0005068!1.01e-23!57;UBERON:0006241!1.01e-23!57;UBERON:0007135!1.01e-23!57;UBERON:0004121!5.64e-20!169;UBERON:0000924!2.76e-19!173;UBERON:0006601!2.76e-19!173;UBERON:0000033!3.41e-18!123;UBERON:0002200!7.69e-18!11;UBERON:0006876!7.69e-18!11;UBERON:0000153!5.68e-17!129;UBERON:0007811!5.68e-17!129;UBERON:0005284!2.29e-16!5;UBERON:0003056!3.92e-16!61;UBERON:0002780!2.14e-14!41;UBERON:0001890!2.14e-14!41;UBERON:0006240!2.14e-14!41;UBERON:0003080!5.70e-14!42;UBERON:0002073!7.73e-14!4;UBERON:0005086!7.73e-14!4;UBERON:0003076!7.21e-12!15;UBERON:0003057!7.21e-12!15;UBERON:0004733!8.98e-12!12;UBERON:0002028!8.98e-12!12;UBERON:0007277!8.98e-12!12;UBERON:0000412!4.49e-11!3;UBERON:0001992!4.49e-11!3;UBERON:0003210!8.04e-11!3;UBERON:0004732!8.74e-11!13;UBERON:0001778!1.84e-10!3;UBERON:0001775!1.84e-10!3;UBERON:0000119!2.45e-10!312;UBERON:0001893!1.57e-09!34;UBERON:0002037!4.21e-09!6;UBERON:0006215!4.21e-09!6;UBERON:0002680!9.54e-09!9;UBERON:0001895!9.54e-09!9;UBERON:0010092!9.54e-09!9;UBERON:0002067!1.14e-08!9;UBERON:0004016!1.14e-08!9;UBERON:0010083!1.14e-08!9;UBERON:0001869!1.49e-08!32;UBERON:0000483!2.42e-08!309;UBERON:0002791!2.62e-08!33;UBERON:0002020!5.80e-08!34;UBERON:0003528!5.80e-08!34;UBERON:0000488!6.20e-08!4;UBERON:0000956!9.81e-08!25;UBERON:0000203!9.81e-08!25;UBERON:0003947!9.90e-08!2;UBERON:0005629!9.90e-08!2;UBERON:0005358!9.90e-08!2;UBERON:0001886!9.90e-08!2;UBERON:0004086!9.90e-08!2;UBERON:0005282!9.90e-08!2;UBERON:0005281!9.90e-08!2;UBERON:0000475!1.04e-07!365;UBERON:0001905!1.41e-07!2;UBERON:0002757!1.41e-07!2;UBERON:0010134!1.41e-07!2;UBERON:0002784!1.41e-07!2;UBERON:0005408!1.41e-07!2;UBERON:0001899!1.41e-07!2;UBERON:0001894!1.77e-07!7;UBERON:0006222!1.77e-07!7;UBERON:0005085!2.27e-07!29;UBERON:0001897!3.41e-07!2;UBERON:0002360!3.41e-07!2;UBERON:0000094!3.41e-07!2;UBERON:0007645!3.41e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000412;3.47e-38;3!UBERON:0001992;3.47e-38;3!UBERON:0005629;1.74e-25;2!UBERON:0005358;1.74e-25;2!UBERON:0001886;1.74e-25;2!UBERON:0004086;1.74e-25;2!UBERON:0005282;1.74e-25;2!UBERON:0005281;1.74e-25;2!UBERON:0002073;3.22e-23;5!UBERON:0005284;5.88e-23;5!UBERON:0002037;4.37e-19;6!UBERON:0006876;2.99e-18;11!UBERON:0003210;9.13e-18;3!UBERON:0002067;3.44e-13;9!UBERON:0002680;6.13e-13;9!UBERON:0001895;6.13e-13;9!UBERON:0004733;7.54e-10;12!UBERON:0002028;7.54e-10;12!UBERON:0004732;3.92e-09;13!UBERON:0001003;3.92e-08;15!UBERON:0007376;3.92e-08;15!UBERON:0001905;2.12e-07;2!UBERON:0002757;2.12e-07;2!UBERON:0010134;2.12e-07;2!UBERON:0005408;2.12e-07;2!UBERON:0001899;2.12e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,2.70e-38,3;UBERON:0001992,2.70e-38,3;UBERON:0005629,2.37e-25,2;UBERON:0005358,2.37e-25,2;UBERON:0001886,2.37e-25,2;UBERON:0004086,2.37e-25,2;UBERON:0005282,2.37e-25,2;UBERON:0005281,2.37e-25,2;UBERON:0002073,2.77e-23,5;UBERON:0005086,2.77e-23,5;UBERON:0005284,6.83e-23,5;UBERON:0002037,4.95e-19,6;UBERON:0006215,4.95e-19,6;UBERON:0006876,2.99e-18,11;UBERON:0003210,9.94e-18,3;UBERON:0002067,3.17e-13,9;UBERON:0004016,3.17e-13,9;UBERON:0010083,3.17e-13,9;UBERON:0002680,6.65e-13,9;UBERON:0001895,6.65e-13,9;UBERON:0010092,6.65e-13,9;UBERON:0004733,8.02e-10,12;UBERON:0002028,8.02e-10,12;UBERON:0007277,8.02e-10,12;UBERON:0004732,4.15e-09,13;UBERON:0001003,3.74e-08,15;UBERON:0007376,3.74e-08,15;UBERON:0007383,3.74e-08,15;UBERON:0000955,4.76e-08,68;UBERON:0006238,4.76e-08,68;UBERON:0003076,5.78e-08,15;UBERON:0003057,5.78e-08,15;UBERON:0001905,1.99e-07,2;UBERON:0002757,1.99e-07,2;UBERON:0010134,1.99e-07,2;UBERON:0005408,1.99e-07,2;UBERON:0001899,1.99e-07,2;UBERON:0004121,3.15e-07,171;UBERON:0000924,3.15e-07,171;UBERON:0006601,3.15e-07,171;UBERON:0010371,9.84e-07,104 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,2.70866327768933,1.22400414746552,2.5076377718247,0.572471974262113,0.410623275218653,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79616152611729,0.443458794925128,0.966182642624386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.57307626996383,1.15235184896,0,0,0,0,0,0.161872944368132,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0.211931901159562,0,0.103052529238439,0,0,0,0,0,0,0,0,0.10075209822764,0,0,0,0,0,0,0.464775771478074,1.55491582523056,0.252320850875628,0,4.69348596989448,3.85944562915731,2.76269842704961,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.811512834825538,0,0,0,0,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.1396703616701,3.05172048183296,0.80672114403045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,7.83204629850962,5.83343820478455,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0,0,0,0,0,0,0.307007349452259,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83805880167568,0.949138274156178,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.663475559587348,0,0.658156191461918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202203398942031,0,0,0,0,0,0,0,0.30607276163049,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0.189932387867636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250381861413,0,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0.546974809018219,0,0,0,0,1.60710550763486,0.672567444437648,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0.0679914901909147,0.872701380680755,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0,0,0.829169439458779,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr3:147112699..147112713,- | |||
}} |
Latest revision as of 16:43, 29 July 2015
Short description: | p@chr3:147112699..147112713, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:147112699..147112713, - |
Coexpression cluster: | C368_Pericytes_Fibroblast_Nucleus_Anulus_Meningeal_Mesenchymal_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 2.70e-38 | 3 |
stem cell of epidermis | 2.70e-38 | 3 |
astrocyte of the cerebellum | 2.60e-37 | 3 |
central nervous system pericyte | 1.29e-26 | 2 |
fibroblast of choroid plexus | 2.37e-25 | 2 |
hair follicle cell | 2.77e-23 | 5 |
leptomeningeal cell | 9.94e-18 | 3 |
oligodendrocyte | 2.07e-16 | 7 |
macroglial cell | 2.07e-16 | 7 |
astrocyte | 2.07e-16 | 7 |
oligodendrocyte precursor cell | 2.07e-16 | 7 |
pericyte cell | 8.06e-14 | 4 |
migratory neural crest cell | 1.46e-13 | 41 |
neurectodermal cell | 3.44e-12 | 59 |
ectodermal cell | 6.62e-10 | 72 |
glial cell (sensu Vertebrata) | 4.37e-07 | 15 |
glial cell | 4.37e-07 | 15 |
glioblast | 4.37e-07 | 15 |
glioblast (sensu Vertebrata) | 4.37e-07 | 15 |