FFCP PHASE1:Hg19::chrX:45364675..45364690,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:45364675..45364690,+
|short_description=p2@ENST00000435394,p2@uc004dgj.1
|description=CAGE_peak_2_at_ENST00000435394_5end,CAGE_peak_2_at_uc004dgj.1_5end
|a...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=42bp_to_ENST00000435394,uc004dgj.1_5end | |||
|cluster_id=chrX:45364675..45364690,+ | |||
|description=CAGE_peak_2_at_ENST00000435394_5end,CAGE_peak_2_at_uc004dgj.1_5end | |||
|id=chrX:45364675..45364690,+ | |||
|ontology_enrichment_celltype=CL:0002620!3.75e-17!23;CL:0000055!3.56e-14!180;CL:0000144!1.62e-11!625;CL:0000057!2.62e-11!75;CL:0000548!1.12e-10!679;CL:0000004!1.12e-10!679;CL:0000255!1.12e-10!679;CL:0000012!1.83e-10!682;CL:0002551!2.75e-10!6;CL:0002371!2.79e-10!591;CL:0000220!1.91e-09!246;CL:0002321!3.14e-09!248;CL:0000188!4.32e-08!9;CL:0000680!5.98e-08!57;CL:0000056!5.98e-08!57;CL:0000355!5.98e-08!57;CL:0000003!8.84e-08!722;CL:0000183!2.88e-07!59;CL:0000515!8.59e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002551;6.47e-24;6!CL:0002620;1.42e-14;23!CL:0000056;2.86e-13;4!CL:0000680;5.19e-13;7!CL:0002556;1.57e-09;6!CL:0002166;2.69e-08;3!CL:0000515;2.69e-08;3!CL:0000057;4.53e-08;73!CL:0002601;2.65e-07;1!CL:0000228;3.26e-07;1!CL:0002372;3.26e-07;1!CL:0002574;7.77e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002551,2.36e-24,6;CL:0002620,8.96e-15,23;CL:0000057,6.91e-14,76;CL:0000515,1.85e-13,4;CL:0002556,1.60e-09,6;CL:0002166,2.91e-08,3;CL:0002601,2.50e-07,1;CL:0000228,3.17e-07,1;CL:0002372,3.17e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000515;2.86e-13;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.81e-17;3!DOID:127;3.81e-17;3!DOID:0060072;5.35e-13;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.34e-17,3;DOID:127,3.34e-17,3;DOID:0060072,4.85e-13,4 | |||
|ontology_enrichment_uberon=UBERON:0003102!6.79e-17!95;UBERON:0002199!6.32e-15!45;UBERON:0002416!6.32e-15!45;UBERON:0000914!3.05e-14!83;UBERON:0002329!3.05e-14!83;UBERON:0003077!3.05e-14!83;UBERON:0003059!3.05e-14!83;UBERON:0007282!3.05e-14!83;UBERON:0009618!3.05e-14!83;UBERON:0007285!3.05e-14!83;UBERON:0002097!1.80e-13!40;UBERON:0000486!3.52e-12!82;UBERON:0000475!5.72e-12!365;UBERON:0004290!1.44e-10!70;UBERON:0005256!1.03e-09!143;UBERON:0001134!5.08e-07!61;UBERON:0002036!5.08e-07!61;UBERON:0003082!5.08e-07!61;UBERON:0002100!6.85e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;6.98e-16;9!UBERON:0011137;5.50e-13;11!UBERON:0010323;5.50e-13;11!UBERON:0001758;1.57e-09;6!UBERON:0003672;1.57e-09;6!UBERON:0000075;7.59e-09;16!UBERON:0001134;1.55e-08;16!UBERON:0002036;1.55e-08;16!UBERON:0003129;3.16e-08;7!UBERON:0002199;2.42e-07;46!UBERON:0002416;2.42e-07;46!UBERON:0002097;4.20e-07;41!UBERON:0004923;6.03e-07;55!UBERON:0000165;6.56e-07;28!UBERON:0001828;6.82e-07;8!UBERON:0003102;9.81e-07;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002067,3.60e-16,9;UBERON:0004016,3.60e-16,9;UBERON:0010083,3.60e-16,9;UBERON:0003102,1.27e-14,99;UBERON:0010323,5.89e-13,11;UBERON:0011137,3.99e-10,14;UBERON:0002097,9.97e-10,41;UBERON:0001758,1.60e-09,6;UBERON:0003672,1.60e-09,6;UBERON:0000486,7.18e-09,83;UBERON:0000075,7.95e-09,16;UBERON:0002199,1.65e-08,46;UBERON:0002416,1.65e-08,46;UBERON:0003129,3.21e-08,7;UBERON:0002329,1.22e-07,71;UBERON:0003059,1.22e-07,71;UBERON:0007282,1.22e-07,71;UBERON:0004290,1.22e-07,71;UBERON:0009618,1.22e-07,71;UBERON:0003077,1.65e-07,72;UBERON:0007285,1.65e-07,72;UBERON:0007524,2.23e-07,73;UBERON:0001828,6.70e-07,8;UBERON:0004923,7.25e-07,66;UBERON:0007503,8.91e-07,78 | |||
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| ||
|short_description=p2@ENST00000435394,p2@uc004dgj.1 | |||
}} | }} |
Latest revision as of 08:12, 1 August 2015
Short description: | p2@ENST00000435394, p2@uc004dgj.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000435394_5end, CAGE_peak_2_at_uc004dgj.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 42bp_to_ENST00000435394, uc004dgj.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of dermis | 2.36e-24 | 6 |
skin fibroblast | 8.96e-15 | 23 |
fibroblast | 6.91e-14 | 76 |
skeletal muscle myoblast | 1.85e-13 | 4 |
fibroblast of periodontium | 1.60e-09 | 6 |
epithelial cell of Malassez | 2.91e-08 | 3 |
uterine smooth muscle cell | 2.50e-07 | 1 |
multinucleate cell | 3.17e-07 | 1 |
myotube | 3.17e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
dermis | 3.60e-16 | 9 |
dermatome | 3.60e-16 | 9 |
future dermis | 3.60e-16 | 9 |
surface structure | 1.27e-14 | 99 |
cranial skeletal system | 5.89e-13 | 11 |
axial skeletal system | 3.99e-10 | 14 |
skin of body | 9.97e-10 | 41 |
periodontium | 1.60e-09 | 6 |
dentition | 1.60e-09 | 6 |
multilaminar epithelium | 7.18e-09 | 83 |
subdivision of skeletal system | 7.95e-09 | 16 |
integument | 1.65e-08 | 46 |
integumental system | 1.65e-08 | 46 |
skull | 3.21e-08 | 7 |
somite | 1.22e-07 | 71 |
presomitic mesoderm | 1.22e-07 | 71 |
presumptive segmental plate | 1.22e-07 | 71 |
dermomyotome | 1.22e-07 | 71 |
trunk paraxial mesoderm | 1.22e-07 | 71 |
paraxial mesoderm | 1.65e-07 | 72 |
presumptive paraxial mesoderm | 1.65e-07 | 72 |
dense mesenchyme tissue | 2.23e-07 | 73 |
gingiva | 6.70e-07 | 8 |
organ component layer | 7.25e-07 | 66 |
epithelial vesicle | 8.91e-07 | 78 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.34e-17 | 3 |
leiomyoma | 3.34e-17 | 3 |
benign neoplasm | 4.85e-13 | 4 |