FFCP PHASE1:Hg19::chr6:108145536..108145550,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=256380 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21397 | |||
|TSSclassifier=strong | |||
|UniProt=Q8N228 | |||
|association_with_transcript=-15bp_to_ENST00000369022,NM_198081,uc003prz.3,uc010kdf.2,uc011eam.1_5end | |||
|cluster_id=chr6:108145536..108145550,- | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_SCML4_5end | |||
|id=chr6:108145536..108145550,- | |||
|ontology_enrichment_celltype=CL:0000791!5.69e-33!18;CL:0000789!5.69e-33!18;CL:0002420!5.69e-33!18;CL:0002419!5.69e-33!18;CL:0000790!5.69e-33!18;CL:0000542!4.18e-31!53;CL:0000051!4.18e-31!53;CL:0000838!5.51e-30!52;CL:0000738!1.30e-22!140;CL:0000084!4.50e-22!25;CL:0000827!4.50e-22!25;CL:0000625!1.31e-21!11;CL:0002087!3.04e-20!119;CL:0000037!3.24e-18!172;CL:0000566!3.24e-18!172;CL:0002032!1.30e-16!165;CL:0000837!1.30e-16!165;CL:0000988!2.32e-16!182;CL:0002031!1.10e-14!124;CL:0000236!8.85e-14!14;CL:0000624!9.14e-12!6;CL:0000094!4.65e-08!8;CL:0000623!4.92e-07!3;CL:0000825!4.92e-07!3;CL:0000945!6.13e-07!24;CL:0000826!6.13e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000791;5.38e-46;18!CL:0000789;5.38e-46;18!CL:0002419;5.38e-46;18!CL:0000625;6.67e-37;11!CL:0000084;6.38e-32;25!CL:0000542;2.32e-26;53!CL:0000236;3.30e-18;13!CL:0000624;4.41e-14;6!CL:0000623;3.09e-11;3!CL:0000226;1.04e-10;3!CL:0000842;1.04e-10;3!CL:0000945;4.13e-09;24!CL:0002087;1.17e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.47e-46,18;CL:0000789,3.47e-46,18;CL:0002420,3.47e-46,18;CL:0002419,3.47e-46,18;CL:0000790,3.47e-46,18;CL:0000838,6.16e-44,52;CL:0000542,5.78e-43,53;CL:0000051,5.78e-43,53;CL:0000625,5.21e-37,11;CL:0000084,4.68e-32,25;CL:0000827,4.68e-32,25;CL:0000738,3.80e-24,136;CL:0002087,4.84e-23,115;CL:0000037,5.07e-19,168;CL:0000988,1.39e-17,177;CL:0002031,3.17e-17,120;CL:0000236,9.42e-17,14;CL:0002032,2.25e-16,161;CL:0000837,2.25e-16,161;CL:0000624,3.60e-14,6;CL:0000623,3.15e-11,3;CL:0000825,3.15e-11,3;CL:0000226,1.33e-10,3;CL:0000842,1.33e-10,3;CL:0000945,4.32e-09,24;CL:0000826,4.32e-09,24 | |||
|ontology_enrichment_development_v019=CL:0000790;5.38e-46;18!CL:0000051;2.32e-26;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.22e-13!15;UBERON:0000179!1.22e-13!15;UBERON:0000463!1.22e-13!15;UBERON:0007023!2.45e-10!115;UBERON:0004177!2.80e-09!7;UBERON:0002370!4.99e-08!4;UBERON:0005058!4.99e-08!4;UBERON:0009113!4.99e-08!4;UBERON:0003295!4.99e-08!4;UBERON:0005562!4.99e-08!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.66e-20;15!UBERON:0000179;4.66e-20;15!UBERON:0000463;4.66e-20;15!UBERON:0002390;2.15e-15;32!UBERON:0004177;2.58e-10;5!UBERON:0005057;2.58e-10;5!UBERON:0002193;3.83e-10;42!UBERON:0002370;1.74e-07;2!UBERON:0005058;1.74e-07;2!UBERON:0009113;1.74e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.21e-20,15;UBERON:0000179,4.21e-20,15;UBERON:0000463,4.21e-20,15;UBERON:0004177,2.28e-11,7;UBERON:0005057,2.28e-11,7;UBERON:0002370,3.19e-08,4;UBERON:0005058,3.19e-08,4;UBERON:0009113,3.19e-08,4;UBERON:0003295,3.19e-08,4;UBERON:0005562,3.19e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,2.30297638858328,0.77408061658038,0,0,0,0,0,0,1.10799081706375,0.802177789880567,0.868043482863407,0,1.29557466407592,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0,0,0.639337125799041,0,0,0,0.580418477257168,0,0,0,0,0,0,0.736555271975129,0,0.211255286311942,0,0,0,0,0,0,0,0,0,1.09227722252426,2.66852776159066,1.70692089026603,1.60158394814405,3.4485146397269,1.98313461835459,0,2.27685187643779,1.17447437874188,2.29363936875137,0,0.560508562981536,0,3.540775862049,5.89516144123747,2.67281948699362,0,1.30368906653436,2.36723902867367,0,0.111410456885174,0.883817722424512,0.664601683750863,0.541607727530031,0,0.260118695119756,1.80881695064044,2.48715016007264,1.73881851441031,7.41432815810302,9.36392898313996,3.1360657141493,0.339928028092699,4.98186641682498,4.12352934579156,5.81945291644857,6.05274287215784,3.90650072313851,4.75226022224187,5.42070428679982,4.09557155694139,8.74515085866421,6.15620855314444,3.28451198768419,4.03213486449465,2.94184215361858,2.89648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.87780264148325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,4.72873824484625,6.253199670926,2.31017465303547,0,0,0,0,0,0,2.99161459204025,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.06768026122887,2.5885704098234,3.41528184971022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,1.52234282769651,1.52927441428475,2.84823593587081,5.00286728461357,4.52498500394814,0.648473311192717,1.62009431171434,2.37937552888281,0,0,0,0.185803175125719,0.144269212976445,0,0,1.1974762285969,0,0.211673582723883,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0.597743964753209,1.38141957765574,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.106787412567695,0.157204305099666,0.414239055347196,0.992332043623902,0,0,0,0,0.2506898940227,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0.198916222116275,0,0,0.781514011233092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.0887023701626388,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0,0,0,0,0,0,1.2217909337381,1.09578409555081,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,1.0661699095049,0,1.48554492622814,3.91070700063905,0,0,0,0,0,2.28996980249598,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,1.81146414231924,0 | |||
|short_description=p4@SCML4 | |||
}} |
Latest revision as of 16:53, 19 September 2015
Short description: | p4@SCML4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SCML4_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -15bp_to_ENST00000369022, NM_198081, uc003prz.3, uc010kdf.2, uc011eam.1_5end |
EntrezGene: | SCML4 |
HGNC: | 21397 |
UniProt: | Q8N228 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.47e-46 | 18 |
alpha-beta T cell | 3.47e-46 | 18 |
immature T cell | 3.47e-46 | 18 |
mature T cell | 3.47e-46 | 18 |
immature alpha-beta T cell | 3.47e-46 | 18 |
lymphoid lineage restricted progenitor cell | 6.16e-44 | 52 |
lymphocyte | 5.78e-43 | 53 |
common lymphoid progenitor | 5.78e-43 | 53 |
CD8-positive, alpha-beta T cell | 5.21e-37 | 11 |
T cell | 4.68e-32 | 25 |
pro-T cell | 4.68e-32 | 25 |
leukocyte | 3.80e-24 | 136 |
nongranular leukocyte | 4.84e-23 | 115 |
hematopoietic stem cell | 5.07e-19 | 168 |
hematopoietic cell | 1.39e-17 | 177 |
hematopoietic lineage restricted progenitor cell | 3.17e-17 | 120 |
B cell | 9.42e-17 | 14 |
hematopoietic oligopotent progenitor cell | 2.25e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.25e-16 | 161 |
CD4-positive, alpha-beta T cell | 3.60e-14 | 6 |
natural killer cell | 3.15e-11 | 3 |
pro-NK cell | 3.15e-11 | 3 |
single nucleate cell | 1.33e-10 | 3 |
mononuclear cell | 1.33e-10 | 3 |
lymphocyte of B lineage | 4.32e-09 | 24 |
pro-B cell | 4.32e-09 | 24 |
Ontology term | p-value | n |
---|---|---|
blood | 4.21e-20 | 15 |
haemolymphatic fluid | 4.21e-20 | 15 |
organism substance | 4.21e-20 | 15 |
hemopoietic organ | 2.28e-11 | 7 |
immune organ | 2.28e-11 | 7 |
thymus | 3.19e-08 | 4 |
hemolymphoid system gland | 3.19e-08 | 4 |
thymic region | 3.19e-08 | 4 |
pharyngeal gland | 3.19e-08 | 4 |
thymus primordium | 3.19e-08 | 4 |