FFCP PHASE1:Hg19::chr6:109776901..109776994,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64780 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20619 | |||
|TSSclassifier=strong | |||
|UniProt=Q5TED7 | |||
|association_with_transcript=0bp_to_ENST00000431946_5end | |||
|cluster_id=chr6:109776901..109776994,- | |||
|description=CAGE_peak_1_at_MICAL1_5end | |||
|id=chr6:109776901..109776994,- | |||
|ontology_enrichment_celltype=CL:0000738!5.24e-16!140;CL:0002009!5.65e-15!65;CL:0000034!1.32e-14!444;CL:0002194!6.82e-14!63;CL:0000576!6.82e-14!63;CL:0000040!6.82e-14!63;CL:0000559!6.82e-14!63;CL:0000723!7.22e-14!436;CL:0000048!8.84e-14!430;CL:0000766!4.23e-13!76;CL:0002087!5.71e-13!119;CL:0000557!6.42e-13!71;CL:0000219!3.20e-11!390;CL:0000055!4.51e-11!180;CL:0000988!1.43e-10!182;CL:0002057!2.49e-10!42;CL:0000037!4.49e-10!172;CL:0000566!4.49e-10!172;CL:0002031!4.88e-10!124;CL:0000839!5.31e-10!70;CL:0002371!7.58e-10!591;CL:0002320!8.34e-09!365;CL:0002032!2.04e-08!165;CL:0000837!2.04e-08!165;CL:0000134!2.47e-08!358;CL:0000860!5.98e-08!45;CL:0000763!7.00e-08!112;CL:0000049!7.00e-08!112;CL:0000144!1.10e-07!625;CL:0000451!2.07e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000576;1.73e-08;48!CL:0000473;1.49e-07;39!CL:0000234;1.49e-07;39!CL:0000451;2.06e-07;10!CL:0000766;4.35e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.29e-17,136;CL:0002009,1.54e-17,61;CL:0002194,2.23e-16,59;CL:0000576,2.23e-16,59;CL:0000040,2.23e-16,59;CL:0000559,2.23e-16,59;CL:0000034,7.40e-16,441;CL:0000766,3.44e-15,72;CL:0000723,4.34e-15,433;CL:0000557,4.35e-15,67;CL:0000048,5.33e-15,427;CL:0002087,1.62e-14,115;CL:0000473,1.15e-12,48;CL:0000234,1.15e-12,48;CL:0000219,2.74e-12,386;CL:0000839,7.47e-12,66;CL:0000988,8.14e-12,177;CL:0002031,2.51e-11,120;CL:0000037,3.54e-11,168;CL:0000860,2.49e-10,42;CL:0002057,2.49e-10,42;CL:0002320,9.40e-10,361;CL:0002032,2.02e-09,161;CL:0000837,2.02e-09,161;CL:0000134,2.95e-09,354;CL:0000763,4.43e-09,108;CL:0000049,4.43e-09,108;CL:0000451,2.07e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;9.12e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!7.74e-15!167;UBERON:0002390!2.58e-14!102;UBERON:0003061!2.58e-14!102;UBERON:0003081!4.12e-13!216;UBERON:0002193!3.03e-12!112;UBERON:0002371!4.39e-12!80;UBERON:0001474!2.73e-10!86;UBERON:0004765!4.93e-09!101;UBERON:0001434!4.93e-09!101;UBERON:0002384!6.66e-08!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.87e-16,98;UBERON:0003061,3.87e-16,98;UBERON:0002204,5.41e-16,167;UBERON:0003081,2.11e-14,203;UBERON:0002371,5.43e-14,76;UBERON:0002193,8.63e-14,108;UBERON:0002405,4.81e-12,93;UBERON:0001474,6.46e-12,82;UBERON:0000926,6.13e-11,315;UBERON:0004120,6.13e-11,315;UBERON:0006603,6.13e-11,315;UBERON:0004765,2.39e-10,90;UBERON:0001434,3.83e-10,100;UBERON:0002384,8.72e-09,371;UBERON:0007503,7.74e-07,78 | |||
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| |||
|short_description=p1@MICAL1 | |||
}} |
Latest revision as of 18:46, 19 September 2015
Short description: | p1@MICAL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MICAL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000431946_5end |
EntrezGene: | MICAL1 |
HGNC: | 20619 |
UniProt: | Q5TED7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.29e-17 | 136 |
macrophage dendritic cell progenitor | 1.54e-17 | 61 |
monopoietic cell | 2.23e-16 | 59 |
monocyte | 2.23e-16 | 59 |
monoblast | 2.23e-16 | 59 |
promonocyte | 2.23e-16 | 59 |
stem cell | 7.40e-16 | 441 |
myeloid leukocyte | 3.44e-15 | 72 |
somatic stem cell | 4.34e-15 | 433 |
granulocyte monocyte progenitor cell | 4.35e-15 | 67 |
multi fate stem cell | 5.33e-15 | 427 |
nongranular leukocyte | 1.62e-14 | 115 |
defensive cell | 1.15e-12 | 48 |
phagocyte | 1.15e-12 | 48 |
motile cell | 2.74e-12 | 386 |
myeloid lineage restricted progenitor cell | 7.47e-12 | 66 |
hematopoietic cell | 8.14e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 2.51e-11 | 120 |
hematopoietic stem cell | 3.54e-11 | 168 |
classical monocyte | 2.49e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.49e-10 | 42 |
connective tissue cell | 9.40e-10 | 361 |
hematopoietic oligopotent progenitor cell | 2.02e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.02e-09 | 161 |
mesenchymal cell | 2.95e-09 | 354 |
myeloid cell | 4.43e-09 | 108 |
common myeloid progenitor | 4.43e-09 | 108 |
dendritic cell | 2.07e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.87e-16 | 98 |
blood island | 3.87e-16 | 98 |
musculoskeletal system | 5.41e-16 | 167 |
lateral plate mesoderm | 2.11e-14 | 203 |
bone marrow | 5.43e-14 | 76 |
hemolymphoid system | 8.63e-14 | 108 |
immune system | 4.81e-12 | 93 |
bone element | 6.46e-12 | 82 |
mesoderm | 6.13e-11 | 315 |
mesoderm-derived structure | 6.13e-11 | 315 |
presumptive mesoderm | 6.13e-11 | 315 |
skeletal element | 2.39e-10 | 90 |
skeletal system | 3.83e-10 | 100 |
connective tissue | 8.72e-09 | 371 |
epithelial vesicle | 7.74e-07 | 78 |