FFCP PHASE1:Hg19::chr8:60031619..60031676,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9760 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18988 | |||
|TSSclassifier=strong | |||
|UniProt=O94900,B4DYA1 | |||
|association_with_transcript=90bp_to_ENST00000361421,ENST00000456290,NM_014729,uc003xtw.1_5end | |||
|cluster_id=chr8:60031619..60031676,- | |||
|coexpression_cluster_id=C4765 | |||
|description=CAGE_peak_1_at_TOX_5end | |||
|id=chr8:60031619..60031676,- | |||
|ontology_enrichment_celltype=CL:0000838!5.77e-13!52;CL:0000084!1.41e-12!25;CL:0000827!1.41e-12!25;CL:0000542!1.63e-12!53;CL:0000051!1.63e-12!53;CL:0000791!7.19e-11!18;CL:0000789!7.19e-11!18;CL:0002420!7.19e-11!18;CL:0002419!7.19e-11!18;CL:0000790!7.19e-11!18;CL:0000625!3.82e-07!11 | |||
|ontology_enrichment_celltype_v019=CL:0000084;2.44e-13;25!CL:0000791;8.62e-12;18!CL:0000789;8.62e-12;18!CL:0002419;8.62e-12;18!CL:0000542;2.83e-08;53!CL:0000625;1.06e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.32e-14,52;CL:0000542,1.93e-13,53;CL:0000051,1.93e-13,53;CL:0000084,1.94e-13,25;CL:0000827,1.94e-13,25;CL:0000791,8.99e-12,18;CL:0000789,8.99e-12,18;CL:0002420,8.99e-12,18;CL:0002419,8.99e-12,18;CL:0000790,8.99e-12,18;CL:0000625,1.09e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;8.62e-12;18!CL:0000051;2.83e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.47e-11!115;UBERON:0003056!2.91e-09!61;UBERON:0000153!5.23e-09!129;UBERON:0007811!5.23e-09!129;UBERON:0000956!1.70e-08!25;UBERON:0000203!1.70e-08!25;UBERON:0001950!2.55e-08!20;UBERON:0005743!2.70e-08!86;UBERON:0001869!2.78e-08!32;UBERON:0002020!3.69e-08!34;UBERON:0003528!3.69e-08!34;UBERON:0001893!3.83e-08!34;UBERON:0002791!7.49e-08!33;UBERON:0001017!8.42e-08!82;UBERON:0003075!1.37e-07!86;UBERON:0007284!1.37e-07!86;UBERON:0002780!1.53e-07!41;UBERON:0001890!1.53e-07!41;UBERON:0006240!1.53e-07!41;UBERON:0002619!1.86e-07!22;UBERON:0000178!1.92e-07!15;UBERON:0000179!1.92e-07!15;UBERON:0000463!1.92e-07!15;UBERON:0003080!2.34e-07!42;UBERON:0000033!2.79e-07!123;UBERON:0001049!9.57e-07!57;UBERON:0005068!9.57e-07!57;UBERON:0006241!9.57e-07!57;UBERON:0007135!9.57e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;3.18e-09;25!UBERON:0000203;3.18e-09;25!UBERON:0001950;6.30e-09;20!UBERON:0002619;4.38e-08;22!UBERON:0000178;5.08e-08;15!UBERON:0000179;5.08e-08;15!UBERON:0000463;5.08e-08;15!UBERON:0001869;1.05e-07;32!UBERON:0001893;2.81e-07;34!UBERON:0002791;2.93e-07;32!UBERON:0003528;3.11e-07;34!UBERON:0002020;3.11e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,5.17e-10,61;UBERON:0000956,2.41e-09,25;UBERON:0000203,2.41e-09,25;UBERON:0001950,5.63e-09,20;UBERON:0007023,1.14e-08,114;UBERON:0001869,2.13e-08,32;UBERON:0003528,2.77e-08,34;UBERON:0002020,2.77e-08,34;UBERON:0001893,2.88e-08,34;UBERON:0002619,3.35e-08,22;UBERON:0003075,4.18e-08,82;UBERON:0007284,4.18e-08,82;UBERON:0000178,5.13e-08,15;UBERON:0000179,5.13e-08,15;UBERON:0000463,5.13e-08,15;UBERON:0002791,5.13e-08,32;UBERON:0002780,1.29e-07,41;UBERON:0001890,1.29e-07,41;UBERON:0003080,1.29e-07,41;UBERON:0006240,1.29e-07,41;UBERON:0001017,1.93e-07,81;UBERON:0002346,7.13e-07,86 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,3.21792517696121,1.65698687863958,0,0,0,0,3.44738962615006,1.83600622119828,2.19418305034661,14.884271330815,14.7824379078715,6.52821725892975,0,0,0,10.2274711980715,28.0195460610965,5.26374819274658,0,0,0,0.232401601740905,26.301308010173,15.5608232847469,3.87796785972314,8.42286679374595,6.2933152507597,2.91090116511902,7.12566065241755,3.34848237924443,0.581592955118259,0,0,0,0,0,0.28769239232215,0.256160706529101,0,0,0.645484683583826,0,0.188242339542605,0,0.449446968890169,0.612167784741805,0.962787081228281,0.639337125799041,0,0.598390972864896,0,0,0.56738522469114,0,0,0,0,3.63239701580021,0,0.316462387440884,0,0,0,0.112328631146495,0.150176892841506,0.32145117339416,0,0,0,7.03984977845291,6.00752472388345,3.55803701545422,4.26730222566507,4.80475184443215,3.4485146397269,5.2883589822789,4.77026877267682,7.39976859842283,15.2681669236444,6.49864487812889,18.5039860010636,15.694239763483,8.69167479757754,11.80258620683,14.5413982217191,29.4010143569298,15.2139710805517,20.5331027979162,20.8317034523283,21.4309401248702,35.3171148326,61.8672405697158,63.5802277454993,73.9294548078493,17.2923281629661,20.1591988717811,57.882142420494,51.4011033081678,43.1806597745228,8.00747441075126,6.95606153033254,7.31748666634838,15.0701425787763,31.0408599817556,25.4284309657146,34.1576584226329,18.1582286164735,16.2770863464105,19.0090408889675,15.6598123840884,19.3259782843172,27.4847598415161,23.2041707003137,18.8859439291841,23.9912024437432,24.3370578162992,13.4686695611003,0,0,0,5.42158728576849,1.00267582127178,2.89693037921647,0,2.43317435151318,17.0162670895322,11.0864698731282,18.796644138329,7.40031776562076,0,0,1.29818957461873,1.21890816109487,0.531831842075461,0.715471872916026,0.571994910780128,0.74291500265913,2.98143611050058,1.72046919021225,2.42998351125316,2.26123176769604,2.51699661725944,12.9305479711832,6.06085402956751,0.775250277507987,1.06729878806013,1.00416183829401,0,0,0,0.367663080345869,5.67099363517232,1.3394959242612,0.673588117878509,4.39184773884957,4.5994991239765,2.84779697870439,2.74802615895611,0,0,0,0.496971951695318,0.379891534993739,0.397227542439656,0.573673241497627,1.41867352879343,0.560677600142307,0,0.49333509683432,0.311211035399766,0,0,0.605429710579726,0,7.73260725051529,0,1.1409436430889,0.298897361103602,1.17434498643765,1.61872944368132,3.08991774744947,2.44985005505872,8.35273357720022,1.13658359293342,5.94001428641027,6.18167323196392,1.82032272387605,0,11.1101835209684,12.1364964275805,3.3247693858102,3.5118209670467,4.59731693698529,3.00476117813194,0,8.9694817844431,4.69826255400848,1.90738711043606,9.00273288253207,9.17167510222106,32.9779891258405,13.5865305122061,0,0,4.54380793639406,2.30124746605748,8.40559495457822,5.32514388774922,2.82105875037393,4.57813599238317,0,0.272746120590835,0,1.58565817968474,2.91565490307268,1.2781333715647,1.45125477021519,1.51392510525377,1.45990943630332,1.56449532329816,0,1.38134921352481,3.71494342425583,1.44375896333917,0.236613600079688,0.168584690078102,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,242.804704678058,0,4.46076306776166,3.62175941848464,0,0.201057944823262,0.648119116109707,17.5936484867575,5.19967392639789,1.44331342025273,20.6356120855637,2.23076519048061,0.288732895522148,1.38895653772983,0.380508304469197,0,0,0,0,0,0,0.671928512795438,0,0,0,0,60.5975782612011,17.8738321046849,26.9526550203004,31.9946296585654,29.7932142886257,0,0,0,0,0,0,0,1.12131084345361,0,0.8800594298514,0.646358578788889,0,1.690605505112,0.797814349754612,1.04007436911366,5.14414748524284,5.67396528093113,3.46348832720929,2.57360388584666,2.17048642156577,4.11620168390384,0,1.77695974371273,1.58390374586686,0,0,0,0,0,0,1.19812427745791,6.89171615004683,1.42636905040718,2.60606352001643,2.26023954805422,0.358121926479791,22.4170287987055,26.993214147664,40.5379840735893,23.3584326029142,23.8848946769116,9.10978977003352,4.63973287666617,2.17771144934653,2.55175500661265,2.24702107184155,2.99161459204025,3.31532410748828,4.53958519360818,2.50085260529839,2.17012018959788,0.415941723061614,6.0665856191035,3.78485796081443,1.17141414992713,1.20378439891088,0,0,3.32112799267718,0.921845842708516,3.21469373531907,1.17480694477644,0,13.2331536718648,8.41285383192606,16.329316343927,0.303127571446259,0,1.5119514666484,0,0,0.280660094433074,0,1.02341449813341,0,0,0.154209693802656,0,0.492762936082855,1.03850885836724,0.232420756919918,0.120859449591622,0.40101294060657,0.0920809889358963,6.08516575272416,5.46273504020151,2.22911505431021,7.670393419426,5.62211960862228,3.13739907670742,5.84556898613043,6.9664075069298,0,1.53084334748864,1.0795795805107,0,2.98041081298238,1.00337954770971,1.27438136522519,0.831076008928724,3.35812132083267,0.877039506583738,0.522870902049801,2.05160100093111,7.87235149679294,4.22991913063594,3.19427136107939,1.64825036673018,1.98022799809411,0,1.30012049207304,0,2.03008508413456,0,0,0.827019434907183,0.644521469209642,0.580066775656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| |||
|short_description=p1@TOX | |||
}} |
Latest revision as of 16:11, 18 September 2015
Short description: | p1@TOX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TOX_5end |
Coexpression cluster: | C4765_Hodgkin_acute_thymus_chronic_CD4_Mast_Natural |
Association with transcript: | 90bp_to_ENST00000361421, ENST00000456290, NM_014729, uc003xtw.1_5end |
EntrezGene: | TOX |
HGNC: | 18988 |
UniProt: | O94900B4DYA1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.32e-14 | 52 |
lymphocyte | 1.93e-13 | 53 |
common lymphoid progenitor | 1.93e-13 | 53 |
T cell | 1.94e-13 | 25 |
pro-T cell | 1.94e-13 | 25 |
mature alpha-beta T cell | 8.99e-12 | 18 |
alpha-beta T cell | 8.99e-12 | 18 |
immature T cell | 8.99e-12 | 18 |
mature T cell | 8.99e-12 | 18 |
immature alpha-beta T cell | 8.99e-12 | 18 |
CD8-positive, alpha-beta T cell | 1.09e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 5.17e-10 | 61 |
cerebral cortex | 2.41e-09 | 25 |
pallium | 2.41e-09 | 25 |
neocortex | 5.63e-09 | 20 |
adult organism | 1.14e-08 | 114 |
cerebral hemisphere | 2.13e-08 | 32 |
brain grey matter | 2.77e-08 | 34 |
gray matter | 2.77e-08 | 34 |
telencephalon | 2.88e-08 | 34 |
regional part of cerebral cortex | 3.35e-08 | 22 |
neural plate | 4.18e-08 | 82 |
presumptive neural plate | 4.18e-08 | 82 |
blood | 5.13e-08 | 15 |
haemolymphatic fluid | 5.13e-08 | 15 |
organism substance | 5.13e-08 | 15 |
regional part of telencephalon | 5.13e-08 | 32 |
regional part of forebrain | 1.29e-07 | 41 |
forebrain | 1.29e-07 | 41 |
anterior neural tube | 1.29e-07 | 41 |
future forebrain | 1.29e-07 | 41 |
central nervous system | 1.93e-07 | 81 |
neurectoderm | 7.13e-07 | 86 |