FFCP PHASE1:Hg19::chr9:73216801..73216815,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr9:73216801..73216815,+ | |||
|coexpression_cluster_id=C206 | |||
|description=CAGE_peak_at_chr9:73216801..73216815,+ | |||
|id=chr9:73216801..73216815,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.49e-09!180;CL:0000077!4.53e-09!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.53e-15;19!CL:0002195;2.50e-07;2!CL:0002571;2.50e-07;2!CL:0002262;4.04e-07;2!CL:1000398;4.04e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.30e-15,19;CL:0002195,2.74e-07,2;CL:0002571,2.74e-07,2;CL:0002262,3.48e-07,2;CL:1000398,3.48e-07,2;CL:0000213,5.20e-07,58;CL:0000215,5.20e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:1909;1.08e-24;2!DOID:3571;5.70e-13;1!DOID:3350;4.04e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,1.85e-24,2;DOID:3571,7.68e-13,1;DOID:3350,4.69e-07,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001280;1.88e-16;3!UBERON:0004647;1.88e-16;3!UBERON:0001282;5.70e-13;1!UBERON:0007195;5.70e-13;1!UBERON:0009842;5.70e-13;1!UBERON:0003704;5.70e-13;1!UBERON:0001171;5.70e-13;1!UBERON:0001172;5.70e-13;1!UBERON:0002107;4.00e-10;19!UBERON:0006925;4.00e-10;19!UBERON:0002423;9.67e-08;25!UBERON:0001281;4.04e-07;2!UBERON:0003497;4.04e-07;2!UBERON:0003909;4.04e-07;2!UBERON:0003835;4.04e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001280,1.00e-16,3;UBERON:0004647,1.00e-16,3;UBERON:0005171,1.00e-16,3;UBERON:0001282,2.95e-13,1;UBERON:0009842,2.95e-13,1;UBERON:0003704,2.95e-13,1;UBERON:0001171,2.95e-13,1;UBERON:0001172,2.95e-13,1;UBERON:0007195,6.82e-13,1;UBERON:0002107,3.64e-10,19;UBERON:0006925,3.64e-10,19;UBERON:0008836,3.64e-10,19;UBERON:0002394,7.93e-09,6;UBERON:0003928,7.93e-09,6;UBERON:0008835,8.31e-09,22;UBERON:0003894,8.31e-09,22;UBERON:0009854,1.97e-08,23;UBERON:0007499,9.01e-08,25;UBERON:0009497,9.01e-08,25;UBERON:0000015,9.01e-08,25;UBERON:0002423,9.01e-08,25;UBERON:0006235,9.01e-08,25;UBERON:0004161,9.01e-08,25;UBERON:0009856,1.77e-07,26;UBERON:0001281,3.48e-07,2;UBERON:0003497,3.48e-07,2;UBERON:0003909,3.48e-07,2;UBERON:0003835,3.48e-07,2 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.845726424575827,1.0007329835313,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0,0.50133791063589,0.144846518960824,0.795285947051099,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0,0,0,0,0,0,0,0.56530794192401,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0.529636723252875,0.286836620748814,0.354668382198357,0,0,0.49333509683432,0.311211035399766,0.269421344139376,1.63461903113459,0.302714855289863,0.576175924479999,0,0,0,0,0,0,0,0,0.122834317311768,0.206651562351531,0,0,0,0,0,0,0,0,0.30648779579902,0.300476117813194,0.680593098960126,0.538168907066586,0,0,0,0,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0,0,0.355009592516614,0,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0.381988425558278,0,0,0.822619941626588,0.300343057843917,0.857479297891735,0,0,0,0.129271715757778,0,0,0.26593811658487,0,0,0,0,2.14466990487221,0,0.823240336780769,0,0.710783897485092,0.791951872933429,1.80863626235752,2.61460037580088,2.39935178836937,0,0,0,0.239624855491583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.767309866440312,0.280660094433074,0.384417447767103,0,0.321707842287215,0,0,0.177561725313127,0.0821271560138091,0,0.116210378459959,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.325378394664303,0.412164046590889,0.640986253728404,0.41254749960294,0,0,0,0,0.154048617114644,0.15350367472613,0,0.322260734604821,0.290033387828457,0.255679882248303,0.0890320356467374,0,0,0,0,0,0.62962469366128,0,0,0,0,0.18532421910392,0.572499546967965,0,0.316379424718726,0.190630193923825,0,0,0,0,0,0.54907405947211,0,0,0,0.421258456238981,0,0.731140468893853,0,0,0.282810863907425,0,0,0,0,0,0,0.811641507850816,0,0.281695602532241,0.430234056612155,0.294747123039363,1.07001315444375,0,0,0,0.379473173765715,0,0,0,0,0.188287601553558,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0.333926115068718,0,0,0.19924798825107,0,0,0.102268682502155,0,0.311039587661807,0,0,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0,0,0,0,0,0.21787692703798,0,0,1.82307289355202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0.61214552326098,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,1.37041924646751,0,0,0,0.400794101257669,0.213452994739353,0.599428828746391,0,0,0,0,0,0,0,0.104602846312333,0.407992870545287,0,0,0.136905378891993,0,0,0,0,0.229160424011684,0.717873024576814,0.399358000997982,0,0.223171457441873,0.201550417460179,1.08089965062721,0,0,0,0,0,0,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,0,0.236417121897595,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0.170388021785422,1.35974509824151,0,0,0,0,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0.306345576763462,0,0,0,0.244052529803926,0.1251909307065,0,0,0,0,0,1.06154382279153,10.8476826747088,0.235265819698172,0,0,0.447764408660622,0.233713309847224,0,0,0,0,0,0.302461847526478,0.15543720058278,0.443565449968902,0,0,0,0,0.265841714557995,0,0.150257608997218,0.380805212168795,0.406870733204662,0.545545977607678,0.107410557042488,0.464033759878494,0.796191777397232,0.400027764663154,0,0,0,0,0.214441591374926,0.260994291965212,0.906823702049089,2.31522474323834,0.244736704506468,0.71635536432595,0,0.657852148736121,0,0.192914038270915,0,0,0.345430341731199,1.21543982470953,0.138258436151731,0,0,0.327130788511688,0.327609848846413,0.491545817507439,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0.636008701306837,0,0,0,0.3062454773532,0.0642292250964595,0,0.159633859057151,0,0,0.0691572524642179,0,0,0,0,0,0,0.381382095467167,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0,0,0,0.0634158101939068,0,0,0,0,0,0,0,0,0.455324382702595,0,0,0.514464028312255,0.0679697329768317,0,0,0,0,0.157115589916002,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0.339854229375634,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0.25458863311266,0.202117188958219,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr9:73216801..73216815,+ | |||
}} |
Latest revision as of 02:31, 1 August 2015
Short description: | p@chr9:73216801..73216815, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:73216801..73216815, + |
Coexpression cluster: | C206_melanoma_somatostatinoma_nonsmall_small_neuroblastoma_smallcell_pituitary |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.30e-15 | 19 |
hepatic stem cell | 2.74e-07 | 2 |
hepatic mesenchymal stem cell | 2.74e-07 | 2 |
endothelial cell of sinusoid | 3.48e-07 | 2 |
endothelial cell of hepatic sinusoid | 3.48e-07 | 2 |
lining cell | 5.20e-07 | 58 |
barrier cell | 5.20e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
liver parenchyma | 1.00e-16 | 3 |
liver lobule | 1.00e-16 | 3 |
hepatic duct | 1.00e-16 | 3 |
intralobular bile duct | 2.95e-13 | 1 |
acinus | 2.95e-13 | 1 |
intrahepatic bile duct | 2.95e-13 | 1 |
portal lobule | 2.95e-13 | 1 |
hepatic acinus | 2.95e-13 | 1 |
stroma of bone marrow | 6.82e-13 | 1 |
liver | 3.64e-10 | 19 |
digestive gland | 3.64e-10 | 19 |
liver bud | 3.64e-10 | 19 |
bile duct | 7.93e-09 | 6 |
digestive system duct | 7.93e-09 | 6 |
hepatic diverticulum | 8.31e-09 | 22 |
liver primordium | 8.31e-09 | 22 |
digestive tract diverticulum | 1.97e-08 | 23 |
epithelial sac | 9.01e-08 | 25 |
epithelium of foregut-midgut junction | 9.01e-08 | 25 |
anatomical boundary | 9.01e-08 | 25 |
hepatobiliary system | 9.01e-08 | 25 |
foregut-midgut junction | 9.01e-08 | 25 |
septum transversum | 9.01e-08 | 25 |
sac | 1.77e-07 | 26 |
hepatic sinusoid | 3.48e-07 | 2 |
abdomen blood vessel | 3.48e-07 | 2 |
sinusoid | 3.48e-07 | 2 |
abdominal segment blood vessel | 3.48e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 1.85e-24 | 2 |
liver cancer | 7.68e-13 | 1 |
mesenchymal cell neoplasm | 4.69e-07 | 2 |