FF:12189-129B2: Difference between revisions

Latest revision as of 18:33, 4 June 2020

Name:	CD19+ B Cells (pluriselect), donor090309, donation1
Species:	Human (Homo sapiens)
Library ID:	CNhs12177,RDhi10007
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	b cell
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013679

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12177		CAGE		DRX008050		DRR008922
RDhi10007		RNA-Seq		DRX012341		DRR013789

Accession ID Hg19

Library id		BAM		CTSS
CNhs12177		DRZ000347		DRZ001732
RDhi10007		DRZ002990

Accession ID Hg38

Library id		BAM		CTSS
CNhs12177		DRZ011697		DRZ013082
RDhi10007

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.126
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.345
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.293
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.441
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.532
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.655
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.298
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.451
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.343
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.655
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.442
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	1.063
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.457
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.235
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	1.063
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.788
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12177

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.30773e-7
MA0003.1	MA0003.1	0.431
MA0004.1	MA0004.1	0.403
MA0006.1	MA0006.1	0.626
MA0007.1	MA0007.1	0.801
MA0009.1	MA0009.1	0.945
MA0014.1	MA0014.1	0.828
MA0017.1	MA0017.1	0.0194
MA0018.2	MA0018.2	0.937
MA0019.1	MA0019.1	0.822
MA0024.1	MA0024.1	0.479
MA0025.1	MA0025.1	0.343
MA0027.1	MA0027.1	0.578
MA0028.1	MA0028.1	0.0091
MA0029.1	MA0029.1	0.854
MA0030.1	MA0030.1	0.0625
MA0031.1	MA0031.1	0.233
MA0035.2	MA0035.2	0.148
MA0038.1	MA0038.1	0.348
MA0039.2	MA0039.2	0.864
MA0040.1	MA0040.1	0.708
MA0041.1	MA0041.1	0.134
MA0042.1	MA0042.1	0.769
MA0043.1	MA0043.1	0.856
MA0046.1	MA0046.1	0.767
MA0047.2	MA0047.2	0.145
MA0048.1	MA0048.1	0.297
MA0050.1	MA0050.1	5.0443e-9
MA0051.1	MA0051.1	2.00821e-4
MA0052.1	MA0052.1	0.335
MA0055.1	MA0055.1	0.815
MA0057.1	MA0057.1	0.922
MA0058.1	MA0058.1	0.35
MA0059.1	MA0059.1	0.195
MA0060.1	MA0060.1	0.255
MA0061.1	MA0061.1	4.29804e-4
MA0062.2	MA0062.2	3.7232e-8
MA0065.2	MA0065.2	0.0131
MA0066.1	MA0066.1	0.118
MA0067.1	MA0067.1	0.708
MA0068.1	MA0068.1	0.367
MA0069.1	MA0069.1	0.344
MA0070.1	MA0070.1	0.512
MA0071.1	MA0071.1	0.528
MA0072.1	MA0072.1	0.418
MA0073.1	MA0073.1	0.744
MA0074.1	MA0074.1	0.653
MA0076.1	MA0076.1	0.00119
MA0077.1	MA0077.1	0.564
MA0078.1	MA0078.1	0.774
MA0079.2	MA0079.2	0.356
MA0080.2	MA0080.2	2.70075e-11
MA0081.1	MA0081.1	0.00161
MA0083.1	MA0083.1	0.139
MA0084.1	MA0084.1	0.294
MA0087.1	MA0087.1	0.359
MA0088.1	MA0088.1	0.135
MA0090.1	MA0090.1	7.88899e-4
MA0091.1	MA0091.1	0.216
MA0092.1	MA0092.1	0.768
MA0093.1	MA0093.1	0.513
MA0099.2	MA0099.2	0.0857
MA0100.1	MA0100.1	0.442
MA0101.1	MA0101.1	0.0564
MA0102.2	MA0102.2	0.923
MA0103.1	MA0103.1	0.0143
MA0104.2	MA0104.2	0.127
MA0105.1	MA0105.1	1.61476e-7
MA0106.1	MA0106.1	0.995
MA0107.1	MA0107.1	0.0243
MA0108.2	MA0108.2	1.06069e-6
MA0111.1	MA0111.1	0.452
MA0112.2	MA0112.2	0.00105
MA0113.1	MA0113.1	0.288
MA0114.1	MA0114.1	0.0535
MA0115.1	MA0115.1	0.217
MA0116.1	MA0116.1	8.5076e-6
MA0117.1	MA0117.1	0.845
MA0119.1	MA0119.1	0.957
MA0122.1	MA0122.1	0.432
MA0124.1	MA0124.1	0.884
MA0125.1	MA0125.1	0.669
MA0131.1	MA0131.1	0.355
MA0135.1	MA0135.1	0.0158
MA0136.1	MA0136.1	1.07114e-14
MA0137.2	MA0137.2	0.742
MA0138.2	MA0138.2	0.267
MA0139.1	MA0139.1	0.209
MA0140.1	MA0140.1	0.0156
MA0141.1	MA0141.1	0.501
MA0142.1	MA0142.1	0.0358
MA0143.1	MA0143.1	0.5
MA0144.1	MA0144.1	0.952
MA0145.1	MA0145.1	0.784
MA0146.1	MA0146.1	0.37
MA0147.1	MA0147.1	0.123
MA0148.1	MA0148.1	0.281
MA0149.1	MA0149.1	0.0591
MA0150.1	MA0150.1	0.962
MA0152.1	MA0152.1	0.331
MA0153.1	MA0153.1	0.0393
MA0154.1	MA0154.1	2.39889e-4
MA0155.1	MA0155.1	0.886
MA0156.1	MA0156.1	7.79553e-10
MA0157.1	MA0157.1	0.121
MA0159.1	MA0159.1	0.0356
MA0160.1	MA0160.1	0.3
MA0162.1	MA0162.1	0.568
MA0163.1	MA0163.1	7.6575e-11
MA0164.1	MA0164.1	0.979
MA0258.1	MA0258.1	0.0108
MA0259.1	MA0259.1	0.542

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12177

Novel motif	Logo	P-value
1	1	0.106
10	10	0.054
100	100	0.602
101	101	0.311
102	102	0.99
103	103	0.0546
104	104	0.215
105	105	0.213
106	106	0.194
107	107	0.947
108	108	0.362
109	109	0.058
11	11	0.0492
110	110	0.14
111	111	0.113
112	112	0.221
113	113	0.0471
114	114	0.155
115	115	0.702
116	116	0.958
117	117	0.0083
118	118	0.26
119	119	0.469
12	12	0.792
120	120	0.388
121	121	0.962
122	122	0.616
123	123	0.148
124	124	0.03
125	125	0.127
126	126	0.124
127	127	0.479
128	128	0.703
129	129	0.643
13	13	0.528
130	130	0.459
131	131	0.511
132	132	0.579
133	133	0.0108
134	134	0.731
135	135	0.796
136	136	0.897
137	137	0.182
138	138	0.475
139	139	0.045
14	14	0.434
140	140	0.177
141	141	0.0454
142	142	0.485
143	143	0.00538
144	144	0.849
145	145	0.269
146	146	0.107
147	147	0.203
148	148	0.226
149	149	0.172
15	15	0.0737
150	150	0.51
151	151	0.622
152	152	0.983
153	153	0.722
154	154	0.987
155	155	0.0273
156	156	0.573
157	157	0.266
158	158	0.168
159	159	0.102
16	16	0.619
160	160	0.296
161	161	0.0999
162	162	0.964
163	163	0.528
164	164	0.646
165	165	0.482
166	166	0.703
167	167	0.0573
168	168	0.0533
169	169	0.23
17	17	0.507
18	18	0.291
19	19	0.993
2	2	0.806
20	20	0.87
21	21	0.742
22	22	0.583
23	23	0.808
24	24	0.297
25	25	0.0491
26	26	0.132
27	27	0.145
28	28	0.53
29	29	0.141
3	3	0.0526
30	30	0.624
31	31	0.515
32	32	0.973
33	33	0.472
34	34	0.746
35	35	0.135
36	36	0.00986
37	37	0.11
38	38	0.359
39	39	0.756
4	4	0.469
40	40	0.115
41	41	0.121
42	42	0.175
43	43	0.0993
44	44	0.334
45	45	0.742
46	46	0.128
47	47	0.0695
48	48	0.123
49	49	0.0776
5	5	0.272
50	50	0.911
51	51	0.349
52	52	0.863
53	53	0.459
54	54	0.572
55	55	0.055
56	56	0.578
57	57	0.217
58	58	0.0207
59	59	0.208
6	6	0.943
60	60	0.266
61	61	0.0577
62	62	0.012
63	63	0.497
64	64	0.175
65	65	0.463
66	66	0.548
67	67	0.431
68	68	0.217
69	69	0.843
7	7	0.166
70	70	0.0315
71	71	0.0403
72	72	0.0966
73	73	0.532
74	74	0.126
75	75	0.0226
76	76	0.26
77	77	0.788
78	78	0.168
79	79	0.296
8	8	0.326
80	80	0.00748
81	81	0.186
82	82	0.0823
83	83	0.564
84	84	0.512
85	85	0.402
86	86	0.117
87	87	0.322
88	88	0.954
89	89	0.409
9	9	0.399
90	90	0.0128
91	91	0.463
92	92	0.509
93	93	0.781
94	94	0.0409
95	95	0.016
96	96	0.33
97	97	0.505
98	98	0.183
99	99	0.27

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12177

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007943!RNA-Seq@DRS012107
+|DRA_sample_Accession=RNA-Seq@SAMD00013679
+|accession_numbers=CAGE;DRX008050;DRR008922;DRZ000347;DRZ001732;DRZ011697;DRZ013082!RNA-Seq;DRX012341;DRR013789;DRZ002990;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!330.87!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.43!271.03!SPIB;;chr2:100759010..100759035,-!p1@AFF3!2.40!251.67!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.20!158.40!POU2AF1;;chr11:47400078..47400106,-!p1@SPI1!2.10!124.96!SPI1;;chr6:391743..391759,+!p1@IRF4!2.10!124.96!IRF4;;chr2:100759037..100759058,-!p2@AFF3!2.07!116.16!AFF3;;chr2:231090471..231090504,+!p2@SP140!1.98!95.04!SP140;;chr6:91006518..91006570,-!p1@BACH2!1.97!205.92!BACH2;;chr17:38020392..38020477,-!p1@IKZF3!1.92!82.72!IKZF3;;chr2:231090433..231090469,+!p1@SP140!1.90!79.20!SP140;;chr2:100758991..100759009,-!p3@AFF3!1.86!72.16!AFF3;;chr2:68592406..68592424,+!p1@PLEK!1.80!61.60!PLEK;;chr3:32023232..32023273,+!p1@ZNF860!1.76!79.20!ZNF860;;chr5:88178983..88179012,-!p1@MEF2C!1.73!388.95!MEF2C;;chr8:86099884..86099918,+!p4@E2F5!1.73!52.80!E2F5;;chr3:71355163..71355209,-!p5@FOXP1!1.72!70.40!FOXP1;;chr7:50343634..50343717,+!p2@IKZF1!1.70!49.28!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.65!63.36!LYL1;;chr7:50344251..50344288,+!p3@IKZF1!1.58!36.96!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!1.56!35.20!IKZF3;;chr20:56195474..56195506,-!p1@ZBP1!1.56!35.20!ZBP1;;chr19:16435625..16435682,+!p1@KLF2!1.54!1026.06!KLF2;;chr2:60780607..60780624,-!p2@BCL11A!1.53!98.56!BCL11A;;chr8:86089627..86089653,+!p3@E2F5!1.51!35.20!E2F5;;chr7:50348268..50348366,+!p4@IKZF1!1.46!28.16!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.46!28.16!IKZF3;;chr6:91006575..91006602,-!p2@BACH2!1.44!38.72!BACH2;;chr13:41593425..41593480,-!p1@ELF1!1.43!160.16!ELF1;;chr10:94449703..94449718,+!p1@HHEX!1.43!96.80!HHEX;;chr5:158526756..158526797,-!p3@EBF1!1.41!24.64!EBF1;;chr5:88120151..88120177,-!p6@MEF2C!1.41!24.64!MEF2C;;chr8:86089531..86089544,+!p7@E2F5!1.41!24.64!E2F5;;chr19:13213704..13213726,-!p3@LYL1!1.40!31.68!LYL1;;chr4:185395590..185395627,-!p3@IRF2!1.40!29.92!IRF2;;chr2:60778035..60778060,-!p4@BCL11A!1.39!28.16!BCL11A;;chr1:25256756..25256774,-!p1@RUNX3!1.36!40.48!RUNX3;;chr7:50344289..50344323,+!p1@IKZF1!1.31!19.36!IKZF1;;chr4:185395633..185395651,-!p2@IRF2!1.27!28.16!IRF2;;chr2:100759060..100759073,-!p8@AFF3!1.27!17.60!AFF3;;chr2:68592394..68592405,+!p2@PLEK!1.27!17.60!PLEK;;chr3:71409904..71409927,-!p46@FOXP1!1.27!17.60!FOXP1;;chr17:45810594..45810608,+!p1@TBX21!1.27!17.60!TBX21;;chr14:69262947..69262986,-!p3@ZFP36L1!1.26!21.12!ZFP36L1;;chr3:71631151..71631194,-!p15@FOXP1!1.26!19.36!FOXP1;;chr19:36391434..36391450,-!p1@NFKBID!1.24!31.68!NFKBID;;chr17:38020516..38020544,-!p5@IKZF3!1.23!15.84!IKZF3;;chr5:88179017..88179046,-!p2@MEF2C!1.21!59.84!MEF2C;;chrX:101186981..101187030,-!p1@ZMAT1!1.20!47.52!ZMAT1;;chr19:36204309..36204335,+!p1@ZBTB32!1.18!14.08!ZBTB32;;chr2:60781201..60781258,-!p3@BCL11A!1.18!14.08!BCL11A;;chr4:57522513..57522548,-!p4@HOPX!1.18!14.08!HOPX;;chr6:91006503..91006517,-!p3@BACH2!1.18!14.08!BACH2;;chr11:128563948..128564003,+!p1@FLI1!1.16!161.92!FLI1;;chr7:64838786..64838809,+!p2@ZNF92!1.15!73.92!ZNF92;;chr18:52989031..52989079,-!p2@TCF4!1.14!29.92!TCF4;;chr10:94449675..94449694,+!p2@HHEX!1.13!33.44!HHEX;;chr19:42636586..42636607,-!p1@POU2F2!1.12!33.44!POU2F2;;chrX:106960249..106960260,-!p5@TSC22D3!1.12!19.36!TSC22D3;;chr9:37003148..37003152,-!p5@PAX5!1.12!12.32!PAX5;;chr7:63505799..63505904,+!p1@ZNF727!1.12!12.32!ZNF727;;chr7:77469439..77469459,+!p6@PHTF2!1.12!12.32!PHTF2;;chr11:47400062..47400077,-!p2@SPI1!1.12!12.32!SPI1;;chr19:19779619..19779670,+!p1@ZNF101!1.11!33.44!ZNF101;;chr14:75988771..75988826,+!p1@BATF!1.11!15.84!BATF;;chr6:144385698..144385742,-!p2@PLAGL1!1.10!14.08!PLAGL1;;chr2:208031542..208031595,-!p2@KLF7!1.09!79.20!KLF7;;chr19:45579725..45579743,-!p1@ZNF296!1.09!51.04!ZNF296;;chr3:18486354..18486377,-!p2@SATB1!1.09!14.08!SATB1;;chr16:3313791..3313834,+!p2@ZNF263!1.08!24.64!ZNF263;;chr18:52989001..52989030,-!p10@TCF4!1.08!12.32!TCF4;;chr2:61108695..61108753,+!p1@REL!1.06!72.16!REL;;chr19:58220517..58220583,-!p1@ZNF154!1.06!33.44!ZNF154;;chr16:85936412..85936431,+!p2@IRF8!1.06!10.56!IRF8;;chr17:38020481..38020506,-!p7@IKZF3!1.06!10.56!IKZF3;;chr19:20748574..20748599,-!p1@ZNF737!1.03!59.84!ZNF737;;chr8:81397846..81397860,+!p3@ZBTB10!1.03!12.32!ZBTB10;;chr19:57183114..57183145,-!p1@ZNF835!1.02!10.56!ZNF835;;chr6:157098579..157098634,+!p4@ARID1B!1.01!21.12!ARID1B;;chr9:117150254..117150271,-!p1@AKNA!0.99!24.64!AKNA;;chrX:106960221..106960236,-!p3@TSC22D3!0.99!24.64!TSC22D3;;chrX:56258844..56258882,+!p1@KLF8!0.99!12.32!KLF8;;chr9:37034186..37034216,-!p2@PAX5!0.99!8.80!PAX5;;chr2:231090344..231090361,-!p3@SP110!0.99!8.80!SP110;;chr17:38020607..38020621,-!p9@IKZF3!0.99!8.80!IKZF3;;chr17:56565257..56565283,-!p2@HSF5!0.99!8.80!HSF5;;chr14:64971288..64971316,-!p2@ZBTB25!0.97!26.40!ZBTB25;;chr2:145277640..145277771,-!p1@ZEB2!0.94!107.36!ZEB2;;chr10:104154246..104154347,+!p3@NFKB2!0.94!49.28!NFKB2;;chrX:131624056..131624069,-!p2@MBNL3!0.94!10.56!MBNL3;;chr2:231084659..231084721,-!p1@SP110!0.93!183.04!SP110;;chr19:11959532..11959593,+!p1@ZNF439!0.93!29.92!ZNF439;;chrX:106960180..106960197,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ZNF280D!0.48!3.52!ZNF280D;;chr19:18391708..18391737,-!p7@JUND!0.48!3.52!JUND;;chr19:53466067..53466087,-!p3@ZNF321P,p3@ZNF816-ZNF321P,p3@ZNF816!0.48!3.52!ZNF816;;chr11:85376121..85376181,-!p1@CREBZF!0.47!80.96!CREBZF;;chr19:21324829..21324855,+!p1@ZNF431!0.47!42.24!ZNF431;;chr8:71316021..71316068,-!p1@NCOA2!0.47!24.64!NCOA2;;chr10:38383255..38383324,+!p1@ZNF37A!0.47!24.64!ZNF37A;;chr19:12175535..12175554,+!p1@ZNF844!0.47!14.08!ZNF844;;chr19:22034809..22034878,-!p2@ZNF43!0.47!8.80!ZNF43;;chr19:53238260..53238312,-!p1@ZNF611!0.47!8.80!ZNF611;;chr17:7382911..7382932,-!p4@ZBTB4!0.47!5.28!ZBTB4;;chr22:29196492..29196503,-!p3@XBP1!0.47!3.52!XBP1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.46!31.68!ZC3H12A;;chr19:35168567..35168620,+!p1@ZNF302!0.46!29.92!ZNF302;;chr3:129158715..129158766,-!p2@MBD4!0.46!24.64!MBD4;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.46!24.64!ZNF595;;chr19:37825540..37825588,+!p2@HKR1!0.46!17.60!HKR1;;chr16:3285144..3285191,-!p1@ZNF200!0.46!12.32!ZNF200;;chr9:35732561..35732587,+!p3@CREB3!0.46!10.56!CREB3;;chr4:56412767..56412799,-!p3@CLOCK!0.46!5.28!CLOCK;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.46!5.28!ZNF285;;chr9:2015275..2015287,+!p8@SMARCA2!0.46!3.52!SMARCA2;;chr16:3185051..3185068,+!p3@ZNF213!0.46!3.52!ZNF213;;chr18:3449586..3449617,+!p8@TGIF1!0.46!3.52!TGIF1;;chr7:148823485..148823510,+!p4@ZNF398!0.46!3.52!ZNF398;;chr1:168195229..168195294,+!p1@SFT2D2,p1@TBX19!0.45!116.16!TBX19;;chr14:24630465..24630531,+!p1@IRF9!0.45!98.56!IRF9;;chr4:467892..467963,-!p1@ABCA11P,p1@ZNF721!0.45!65.12!ZNF721;;chr2:48541789..48541874,+!p1@FOXN2!0.45!58.08!FOXN2;;chr16:31885093..31885165,+!p1@ZNF267!0.45!38.72!ZNF267;;chr10:38299546..38299686,+!p1@ZNF33A!0.45!36.96!ZNF33A;;chr10:96122682..96122730,-!p1@NOC3L!0.45!36.96!NOC3L;;chr14:58765217..58765301,+!p1@ARID4A!0.45!22.88!ARID4A;;chr2:208394627..208394655,+!p2@CREB1!0.45!21.12!CREB1;;chr15:43663214..43663261,-!p@chr15:43663214..43663261,-!0.45!14.08!ZSCAN29;;chr19:58514129..58514205,-!p1@ZNF606!0.45!14.08!ZNF606;;chr19:19843900..19843928,-!p1@ZNF14!0.45!12.32!ZNF14;;chr19:44507091..44507163,+!p1@ZNF230!0.45!10.56!ZNF230;;chr3:150126136..150126158,+!p4@TSC22D2!0.45!8.80!TSC22D2;;chr17:36861675..36861697,+!p3@MLLT6!0.45!5.28!MLLT6;;chr12:80084167..80084197,-!p5@PAWR!0.45!5.28!PAWR;;chr13:74708372..74708409,-!p4@KLF12!0.45!5.28!KLF12;;chrX:47696337..47696360,+!p2@ZNF81!0.45!5.28!ZNF81;;chr2:231084723..231084734,-!p4@SP110!0.45!3.52!SP110;;chr11:113930291..113930339,+!p2@ZBTB16!0.45!3.52!ZBTB16;;chr15:100106670..100106697,+!p4@MEF2A!0.45!3.52!MEF2A;;chr19:57791806..57791875,+!p1@ZNF460!0.44!29.92!ZNF460;;chr1:161015706..161015747,-!p1@USF1!0.44!29.92!USF1;;chr11:67007477..67007493,+!p2@KDM2A!0.44!21.12!KDM2A;;chr19:50169013..50169062,-!p2@IRF3!0.44!14.08!IRF3;;chr19:58400372..58400411,-!p1@ZNF814!0.44!12.32!ZNF814;;chr16:30583017..30583064,-!p1@ZNF688!0.44!12.32!ZNF688;;chr3:48282587..48282603,+!p1@ZNF589!0.44!10.56!ZNF589;;chr1:43148792..43148849,+!p2@YBX1!0.44!8.80!YBX1;;chr19:44598534..44598559,+!p2@ZNF224!0.44!7.04!ZNF224;;chr19:53193790..53193821,-!p3@ZNF83!0.44!7.04!ZNF83;;chr17:41322332..41322351,-!p4@BRCA1!0.44!5.28!BRCA1;;chr17:36861735..36861755,+!p4@MLLT6!0.44!3.52!MLLT6;;chr19:12662314..12662328,-!p2@ZNF564!0.44!3.52!ZNF564;;chr19:37997812..37997866,+!p1@ZNF793!0.44!3.52!ZNF793;;chr14:90085820..90085840,-!p6@FOXN3!0.44!1.76!FOXN3;;chr15:100106705..100106716,+!p10@MEF2A!0.44!1.76!MEF2A;;chr16:88752836..88752852,-!p3@SNAI3!0.44!1.76!SNAI3;;chr17:37934188..37934202,-!p8@IKZF3!0.44!1.76!IKZF3;;chr17:37934466..37934481,-!p13@IKZF3!0.44!1.76!IKZF3;;chr17:42295682..42295731,-!p17@UBTF!0.44!1.76!UBTF;;chr17:47439327..47439336,-!p4@ZNF652!0.44!1.76!ZNF652;;chr17:4981570..4981591,+!p3@ZFP3!0.44!1.76!ZFP3;;chr18:52988979..52988993,-!p18@TCF4!0.44!1.76!TCF4;;chr18:77155942..77155951,+!p3@NFATC1!0.44!1.76!NFATC1;;chr19:12734557..12734565,+!p4@ZNF791!0.44!1.76!ZNF791;;chr19:16435735..16435773,+!p4@KLF2!0.44!1.76!KLF2;;chr19:23299851..23299880,+!p2@ZNF730!0.44!1.76!ZNF730;;chr22:42269579..42269583,+!p13@SREBF2!0.44!1.76!SREBF2;;chr2:16080635..16080650,+!p4@MYCN!0.44!1.76!MYCN;;chr2:185463521..185463557,+!p3@ZNF804A!0.44!1.76!ZNF804A;;chr2:208394455..208394471,+!p7@CREB1!0.44!1.76!CREB1;;chr2:208415075..208415079,+!p8@CREB1!0.44!1.76!CREB1;;chr2:231134598..231134640,+!p6@SP140!0.44!1.76!SP140;;chr2:238600998..238601013,+!p5@LRRFIP1!0.44!1.76!LRRFIP1;;chr2:242556880..242556899,-!p5@THAP4!0.44!1.76!THAP4;;chr2:24714729..24714761,+!p1@NCOA1!0.44!1.76!NCOA1;;chr2:45168856..45168867,+!p7@SIX3!0.44!1.76!SIX3;;chr2:60780730..60780742,-!p5@BCL11A!0.44!1.76!BCL11A;;chr2:61108217..61108242,+!p9@REL!0.44!1.76!REL;;chr2:97202991..97203043,+!p3@ARID5A!0.44!1.76!ARID5A;;chr3:114173558..114173571,-!p19@ZBTB20!0.44!1.76!ZBTB20;;chr3:114173654..114173696,-!p12@ZBTB20!0.44!1.76!ZBTB20;;chr3:114173720..114173794,-!p6@ZBTB20!0.44!1.76!ZBTB20;;chr3:141103634..141103665,+!p18@ZBTB38!0.44!1.76!ZBTB38;;chr3:18480151..18480162,-!p18@SATB1!0.44!1.76!SATB1;;chr3:24536231..24536249,-!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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
@@ Line 39: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12177.12189-129B2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12177.12189-129B2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12177.12189-129B2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12177.12189-129B2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation1.CNhs12177.12189-129B2.hg38.nobarcode.ctss.bed.gz
 |id=FF:12189-129B2
 |is_a=EFO:0002091;;FF:0000025;;FF:0000210
 |is_obsolete=
-|library_ids=CNhs12177!RDhi10007
+|library_id=CNhs12177!RDhi10007
+|library_id_phase_based=2:CNhs12177
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12189
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12189
 |name=CD19+ B Cells (pluriselect), donor090309, donation1
 |namespace=FANTOM5
@@ Line 48: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12177,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007943!RNA-Seq@DRS012107
-|accession_numbers=DRX008050;DRR008922;DRZ000347;DRZ001732;CAGE!DRX012341;DRR013789;DRZ002990;NA;RNA-Seq
-|library_id=CNhs12177!RDhi10007
 }}

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FF:12189-129B2: Difference between revisions

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Latest revision as of 18:33, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0