FF:11559-120D2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005567 | ||
|accession_numbers=CAGE;DRX008291;DRR009163;DRZ000588;DRZ001973 | |accession_numbers=CAGE;DRX008291;DRR009163;DRZ000588;DRZ001973;DRZ011938;DRZ013323 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.69!489.05!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.85!184.28!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.73!52.19!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.58!36.98!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.57!47.25!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.41!24.58!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!118.59!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!1.39!38.89!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.39!26.60!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.39!23.37!HOXD11;;chr10:28034739..28034756,-!p1@MKX!1.37!22.57!MKX;;chr8:67525443..67525459,-!p2@MYBL1!1.36!32.34!MYBL1;;chr1:197886421..197886432,+!p2@LHX9!1.34!20.65!LHX9;;chr5:72744594..72744609,-!p1@FOXD1!1.28!80.30!FOXD1;;chr1:170633348..170633399,+!p2@PRRX1!1.28!24.38!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.16!23.17!TWIST2;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.10!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.14!12.80!HOXA11;;chr4:174451370..174451387,-!p1@HAND2!1.12!12.29!HAND2;;chr6:19837592..19837621,+!p1@ID4!1.11!73.05!ID4;;chr7:27224795..27224840,-!p2@HOXA11!1.11!11.99!HOXA11;;chr4:81118647..81118666,+!p1@PRDM8!1.08!14.61!PRDM8;;chr2:176969179..176969226,+!p2@HOXD11!1.08!11.08!HOXD11;;chr1:197886665..197886732,+!p3@LHX9!1.07!10.68!LHX9;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.63!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.18!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!1.02!12.19!TFAP2C;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.47!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!1.01!9.87!SHOX2;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.01!FOXD1;;chr15:37392534..37392562,-!p10@MEIS2!1.00!9.97!MEIS2;;chr5:2751762..2751784,-!p1@IRX2!1.00!8.97!IRX2;;chr7:27205106..27205134,-!p2@HOXA9!0.99!8.87!HOXA9;;chr2:176969097..176969109,+!p3@HOXD11!0.99!8.87!HOXD11;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.87!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.46!KDM5D;;chr2:176969124..176969155,+!p5@HOXD11!0.97!8.26!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.96!14.31!DRAP1;;chr2:172949484..172949522,+!p1@DLX1!0.96!8.06!DLX1;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.26!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.66!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!0.94!7.66!ZIC1;;chr1:170633058..170633084,+!p5@PRRX1!0.93!7.46!PRRX1;;chr4:111558135..111558198,-!p2@PITX2!0.91!7.05!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.85!HOXC5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.89!6.75!RUNX1T1;;chr19:47523058..47523114,+!p1@NPAS1!0.88!6.55!NPAS1;;chr12:54402745..54402788,+!p1@HOXC8!0.88!6.55!HOXC8;;chr12:53614115..53614154,-!p1@RARG!0.87!35.97!RARG;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.77!NFIX;;chr16:51185172..51185197,-!p1@SALL1!0.87!6.45!SALL1;;chr7:27213893..27213954,-!p1@HOXA10!0.87!6.45!HOXA10;;chr2:172950227..172950249,+!p2@DLX1!0.87!6.35!DLX1;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.06!TWIST2;;chr15:37392616..37392638,-!p2@MEIS2!0.86!20.55!MEIS2;;chr12:80085061..80085119,-!p6@PAWR!0.84!9.67!PAWR;;chr6:10415276..10415341,-!p2@TFAP2A!0.84!7.25!TFAP2A;;chr5:72744562..72744573,-!p3@FOXD1!0.83!7.35!FOXD1;;chr2:8822176..8822196,+!p1@ID2!0.80!804.51!ID2;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.17!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.30!DRAP1;;chr3:147111198..147111225,+!p4@ZIC1!0.80!5.34!ZIC1;;chr4:4861385..4861398,+!p1@MSX1!0.79!16.22!MSX1;;chr2:172967621..172967637,-!p1@DLX2!0.79!14.81!DLX2;;chr1:170632250..170632277,+!p7@PRRX1!0.79!5.14!PRRX1;;chr15:37390850..37390909,-!p3@MEIS2!0.77!10.28!MEIS2;;chr5:321810..321877,+!p1@AHRR!0.76!16.52!AHRR;;chr6:100912752..100912778,-!p2@SIM1!0.76!4.74!SIM1;;chr10:119302645..119302712,+!p3@EMX2!0.76!4.74!EMX2;;chr15:37390482..37390572,-!p7@MEIS2!0.75!6.55!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.44!BNC1;;chr5:88081308..88081333,-!p8@MEF2C!0.75!4.63!MEF2C;;chr15:37392576..37392589,-!p12@MEIS2!0.74!5.64!MEIS2;;chr5:72743793..72743855,-!p4@FOXD1!0.74!5.44!FOXD1;;chr6:100912785..100912822,-!p1@SIM1!0.74!4.53!SIM1;;chr1:44513995..44514031,+!p1@KLF17!0.74!4.53!KLF17;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.43!ZFY;;chr10:119302232..119302265,+!p1@EMX2!0.74!4.43!EMX2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.95!SNAI2;;chr7:137686763..137686784,-!p5@CREB3L2!0.73!8.06!CREB3L2;;chr15:37392703..37392717,-!p8@MEIS2!0.73!6.55!MEIS2;;chr21:36260773..36260804,-!p7@RUNX1!0.73!6.15!RUNX1;;chr3:147127142..147127168,+!p1@ZIC1!0.73!4.33!ZIC1;;chr11:12696071..12696086,+!p3@TEAD1!0.72!5.84!TEAD1;;chr1:170632723..170632739,+!p8@PRRX1!0.72!4.23!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.71!5.44!DRAP1;;chr10:28035133..28035148,-!p3@MKX!0.71!4.13!MKX;;chr20:55205825..55205847,+!p2@TFAP2C!0.71!4.13!TFAP2C;;chr15:37392724..37392757,-!p1@MEIS2!0.70!20.55!MEIS2;;chr1:23885981..23886002,-!p1@ID3!0.69!776.29!ID3;;chr18:22932080..22932170,-!p1@ZNF521!0.69!18.64!ZNF521;;chr2:19558373..19558392,-!p1@OSR1!0.69!11.89!OSR1;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.53!TCF4;;chr2:200322654..200322707,-!p2@SATB2!0.68!5.74!SATB2;;chr1:197886772..197886790,+!p4@LHX9!0.68!3.83!LHX9;;chr14:62162258..62162269,+!p2@HIF1A!0.67!41.31!HIF1A;;chr3:128206762..128206781,-!p2@GATA2!0.67!26.09!GATA2;;chr2:85981107..85981120,+!p3@ATOH8!0.67!3.73!ATOH8;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.73!TCF12;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.63!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.66!34.66!TBX3;;chr11:46299186..46299195,+!p3@CREB3L1!0.66!4.03!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.66!3.53!RFX8;;chr7:27196267..27196311,-!p1@HOXA7!0.65!3.43!HOXA7;;chr12:124873357..124873401,-!p1@NCOR2!0.64!46.35!NCOR2;;chr7:19157043..19157088,-!p2@TWIST1!0.64!9.47!TWIST1;;chr6:10412600..10412637,-!p1@TFAP2A!0.64!6.05!TFAP2A;;chr10:119302508..119302559,+!p5@EMX2!0.64!3.32!EMX2;;chr2:102091144..102091183,-!p2@RFX8!0.64!3.32!RFX8;;chr11:65687158..65687216,+!p4@DRAP1!0.63!22.06!DRAP1;;chr15:37392094..37392116,-!p6@MEIS2!0.63!4.23!MEIS2;;chr2:172967242..172967265,-!p2@DLX2!0.63!3.22!DLX2;;chr2:172967276..172967296,-!p3@DLX2!0.63!3.22!DLX2;;chr10:28032421..28032494,-!p2@MKX!0.63!3.22!MKX;;chr8:67525473..67525518,-!p1@MYBL1!0.62!8.16!MYBL1;;chr15:37392593..37392607,-!p13@MEIS2!0.62!3.93!MEIS2;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.12!TBX15;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.12!PAWR;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.25!DRAP1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.61!15.11!LRRFIP2;;chr17:46622070..46622109,-!p1@HOXB2!0.61!7.76!HOXB2;;chr16:54964740..54964789,+!p1@IRX5!0.61!4.74!IRX5;;chr11:65687243..65687276,+!p8@DRAP1!0.61!4.43!DRAP1;;chr10:28035112..28035130,-!p5@MKX!0.60!3.02!MKX;;chr12:114843940..114843955,-!p2@TBX5!0.60!3.02!TBX5;;chr20:30193083..30193098,+!p1@ID1!0.59!290.17!ID1;;chr13:37494248..37494260,-!p3@SMAD9!0.59!2.92!SMAD9;;chr13:37494275..37494304,-!p2@SMAD9!0.59!2.92!SMAD9;;chr3:147111505..147111529,+!p6@ZIC1!0.59!2.92!ZIC1;;chr3:114343768..114343822,-!p1@ZBTB20!0.58!14.51!ZBTB20;;chr3:147110055..147110129,-!p1@ZIC4!0.58!2.82!ZIC4;;chr5:139492456..139492489,+!p7@PURA!0.58!2.82!PURA;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.82!IRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.58!2.82!RUNX1T1;;chr17:46682321..46682362,-!p1@HOXB6!0.58!2.82!HOXB6;;chr14:62162285..62162296,+!p3@HIF1A!0.57!17.33!HIF1A;;chr2:85980951..85981004,+!p1@ATOH8!0.57!4.84!ATOH8;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.72!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.51!TOX2;;chr10:114710244..114710257,+!p3@TCF7L2!0.56!8.36!TCF7L2;;chr1:197886646..197886657,+!p5@LHX9!0.56!2.62!LHX9;;chr18:52969674..52969685,-!p24@TCF4!0.56!2.62!TCF4;;chr2:119604456..119604501,-!p2@EN1!0.56!2.62!EN1;;chr10:63809106..63809127,+!p1@ARID5B!0.55!42.92!ARID5B;;chr14:24837368..24837401,+!p1@NFATC4!0.55!7.05!NFATC4;;chr17:46622114..46622138,-!p4@HOXB2!0.55!4.33!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!0.55!3.83!FOXF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.32!HOXC4;;chr15:37390374..37390422,-!p9@MEIS2!0.55!3.32!MEIS2;;chr12:54394309..54394336,+!p2@HOXC9!0.55!2.52!HOXC9;;chr3:52001448..52001478,-!p2@PCBP4!0.54!44.03!PCBP4;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.35!GLI2;;chr14:75894714..75894733,+!p1@JDP2!0.53!87.65!JDP2;;chr2:145275162..145275202,-!p2@ZEB2!0.53!17.53!ZEB2;;chr5:43067636..43067674,+!p6@ZNF131!0.53!3.53!ZNF131;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.53!2.62!GLIS1;;chr1:170632137..170632172,+!p10@PRRX1!0.53!2.42!PRRX1;;chr11:46316699..46316719,+!p10@CREB3L1!0.53!2.42!CREB3L1;;chr2:172967323..172967336,-!p4@DLX2!0.53!2.42!DLX2;;chr1:151032860..151032918,+!p1@MLLT11!0.52!35.16!MLLT11;;chr7:42276787..42276815,-!p1@GLI3!0.52!7.46!GLI3;;chr5:3595977..3595999,+!p1@IRX1!0.52!2.32!IRX1;;chr7:27212501..27212513,-!p5@HOXA10!0.52!2.32!HOXA10;;chrY:21906761..21906810,-!p2@KDM5D!0.52!2.32!KDM5D;;chr12:124873852..124873881,-!p3@NCOR2!0.51!17.33!NCOR2;;chr3:52001426..52001447,-!p3@PCBP4!0.51!7.66!PCBP4;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.65!EBF1;;chr1:200379104..200379128,-!p2@ZNF281!0.51!6.55!ZNF281;;chr13:37494365..37494381,-!p1@SMAD9!0.51!4.43!SMAD9;;chr7:27192185..27192209,-!p1@HOXA3!0.51!2.22!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.51!2.22!SOX11;;chr11:65667846..65667868,-!p1@FOSL1!0.50!75.56!FOSL1;;chr6:31126291..31126399,+!p1@TCF19!0.50!27.00!TCF19;;chr2:66662281..66662308,+!p1@MEIS1!0.50!9.37!MEIS1;;chr21:36421535..36421610,-!p2@RUNX1!0.49!9.37!RUNX1;;chr17:46621937..46621966,-!p2@HOXB2!0.49!6.95!HOXB2;;chr20:42543506..42543549,+!p2@TOX2!0.49!6.15!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.49!5.34!SATB2;;chr8:67525524..67525543,-!p3@MYBL1!0.49!3.93!MYBL1;;chr1:164528911..164528940,+!p7@PBX1!0.49!3.53!PBX1;;chr1:170632439..170632465,+!p11@PRRX1!0.49!2.12!PRRX1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.49!2.12!RUNX1T1;;chr16:51185318..51185348,-!p2@SALL1!0.49!2.12!SALL1;;chr11:46333934..46333963,+!p5@CREB3L1!0.49!2.12!CREB3L1;;chr11:65686855..65686946,+!p1@DRAP1!0.48!205.64!DRAP1;;chr17:38256822..38256851,-!p1@NR1D1!0.48!21.36!NR1D1;;chr17:1958388..1958404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| |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.69!489.05!LHX9;;chr7:19157248..19157268,-!p1@TWIST1!1.85!184.28!TWIST1;;chr9:132427883..132427951,+!p2@PRRX2!1.73!52.19!PRRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.58!36.98!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.57!47.25!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.41!24.58!EMX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.39!118.59!CREB3L1;;chr15:57511609..57511651,+!p2@TCF12!1.39!38.89!TCF12;;chr1:170632285..170632309,+!p1@PRRX1!1.39!26.60!PRRX1;;chr2:176969228..176969260,+!p1@HOXD11!1.39!23.37!HOXD11;;chr10:28034739..28034756,-!p1@MKX!1.37!22.57!MKX;;chr8:67525443..67525459,-!p2@MYBL1!1.36!32.34!MYBL1;;chr1:197886421..197886432,+!p2@LHX9!1.34!20.65!LHX9;;chr5:72744594..72744609,-!p1@FOXD1!1.28!80.30!FOXD1;;chr1:170633348..170633399,+!p2@PRRX1!1.28!24.38!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.16!23.17!TWIST2;;chr4:174450089..174450153,-!p2@HAND2!1.15!13.10!HAND2;;chr7:27224842..27224872,-!p1@HOXA11!1.14!12.80!HOXA11;;chr4:174451370..174451387,-!p1@HAND2!1.12!12.29!HAND2;;chr6:19837592..19837621,+!p1@ID4!1.11!73.05!ID4;;chr7:27224795..27224840,-!p2@HOXA11!1.11!11.99!HOXA11;;chr4:81118647..81118666,+!p1@PRDM8!1.08!14.61!PRDM8;;chr2:176969179..176969226,+!p2@HOXD11!1.08!11.08!HOXD11;;chr1:197886665..197886732,+!p3@LHX9!1.07!10.68!LHX9;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.63!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!1.05!10.18!HOXA9;;chr20:55204351..55204377,+!p1@TFAP2C!1.02!12.19!TFAP2C;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.47!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!1.01!9.87!SHOX2;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.01!FOXD1;;chr15:37392534..37392562,-!p10@MEIS2!1.00!9.97!MEIS2;;chr5:2751762..2751784,-!p1@IRX2!1.00!8.97!IRX2;;chr7:27205106..27205134,-!p2@HOXA9!0.99!8.87!HOXA9;;chr2:176969097..176969109,+!p3@HOXD11!0.99!8.87!HOXD11;;chr1:170633262..170633285,+!p3@PRRX1!0.98!9.87!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.98!8.46!KDM5D;;chr2:176969124..176969155,+!p5@HOXD11!0.97!8.26!HOXD11;;chr11:65686802..65686818,+!p6@DRAP1!0.96!14.31!DRAP1;;chr2:172949484..172949522,+!p1@DLX1!0.96!8.06!DLX1;;chr11:65686732..65686756,+!p2@DRAP1!0.95!34.26!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.95!8.66!PRRX1;;chr3:147111231..147111281,+!p3@ZIC1!0.94!7.66!ZIC1;;chr1:170633058..170633084,+!p5@PRRX1!0.93!7.46!PRRX1;;chr4:111558135..111558198,-!p2@PITX2!0.91!7.05!PITX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.89!6.85!HOXC5;;chr8:93074803..93074845,-!p1@RUNX1T1!0.89!6.75!RUNX1T1;;chr19:47523058..47523114,+!p1@NPAS1!0.88!6.55!NPAS1;;chr12:54402745..54402788,+!p1@HOXC8!0.88!6.55!HOXC8;;chr12:53614115..53614154,-!p1@RARG!0.87!35.97!RARG;;chr19:13134772..13134822,+!p2@NFIX!0.87!9.77!NFIX;;chr16:51185172..51185197,-!p1@SALL1!0.87!6.45!SALL1;;chr7:27213893..27213954,-!p1@HOXA10!0.87!6.45!HOXA10;;chr2:172950227..172950249,+!p2@DLX1!0.87!6.35!DLX1;;chr2:239756671..239756732,+!p1@TWIST2!0.86!21.06!TWIST2;;chr15:37392616..37392638,-!p2@MEIS2!0.86!20.55!MEIS2;;chr12:80085061..80085119,-!p6@PAWR!0.84!9.67!PAWR;;chr6:10415276..10415341,-!p2@TFAP2A!0.84!7.25!TFAP2A;;chr5:72744562..72744573,-!p3@FOXD1!0.83!7.35!FOXD1;;chr2:8822176..8822196,+!p1@ID2!0.80!804.51!ID2;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.17!SNAI2;;chr11:65687362..65687436,+!p3@DRAP1!0.80!26.30!DRAP1;;chr3:147111198..147111225,+!p4@ZIC1!0.80!5.34!ZIC1;;chr4:4861385..4861398,+!p1@MSX1!0.79!16.22!MSX1;;chr2:172967621..172967637,-!p1@DLX2!0.79!14.81!DLX2;;chr1:170632250..170632277,+!p7@PRRX1!0.79!5.14!PRRX1;;chr15:37390850..37390909,-!p3@MEIS2!0.77!10.28!MEIS2;;chr5:321810..321877,+!p1@AHRR!0.76!16.52!AHRR;;chr6:100912752..100912778,-!p2@SIM1!0.76!4.74!SIM1;;chr10:119302645..119302712,+!p3@EMX2!0.76!4.74!EMX2;;chr15:37390482..37390572,-!p7@MEIS2!0.75!6.55!MEIS2;;chr15:83953397..83953425,-!p1@BNC1!0.75!5.44!BNC1;;chr5:88081308..88081333,-!p8@MEF2C!0.75!4.63!MEF2C;;chr15:37392576..37392589,-!p12@MEIS2!0.74!5.64!MEIS2;;chr5:72743793..72743855,-!p4@FOXD1!0.74!5.44!FOXD1;;chr6:100912785..100912822,-!p1@SIM1!0.74!4.53!SIM1;;chr1:44513995..44514031,+!p1@KLF17!0.74!4.53!KLF17;;chrY:2803415..2803468,+!p1@ZFY!0.74!4.43!ZFY;;chr10:119302232..119302265,+!p1@EMX2!0.74!4.43!EMX2;;chr8:49833978..49833996,-!p1@SNAI2!0.73!100.95!SNAI2;;chr7:137686763..137686784,-!p5@CREB3L2!0.73!8.06!CREB3L2;;chr15:37392703..37392717,-!p8@MEIS2!0.73!6.55!MEIS2;;chr21:36260773..36260804,-!p7@RUNX1!0.73!6.15!RUNX1;;chr3:147127142..147127168,+!p1@ZIC1!0.73!4.33!ZIC1;;chr11:12696071..12696086,+!p3@TEAD1!0.72!5.84!TEAD1;;chr1:170632723..170632739,+!p8@PRRX1!0.72!4.23!PRRX1;;chr11:65687222..65687240,+!p7@DRAP1!0.71!5.44!DRAP1;;chr10:28035133..28035148,-!p3@MKX!0.71!4.13!MKX;;chr20:55205825..55205847,+!p2@TFAP2C!0.71!4.13!TFAP2C;;chr15:37392724..37392757,-!p1@MEIS2!0.70!20.55!MEIS2;;chr1:23885981..23886002,-!p1@ID3!0.69!776.29!ID3;;chr18:22932080..22932170,-!p1@ZNF521!0.69!18.64!ZNF521;;chr2:19558373..19558392,-!p1@OSR1!0.69!11.89!OSR1;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.53!TCF4;;chr2:200322654..200322707,-!p2@SATB2!0.68!5.74!SATB2;;chr1:197886772..197886790,+!p4@LHX9!0.68!3.83!LHX9;;chr14:62162258..62162269,+!p2@HIF1A!0.67!41.31!HIF1A;;chr3:128206762..128206781,-!p2@GATA2!0.67!26.09!GATA2;;chr2:85981107..85981120,+!p3@ATOH8!0.67!3.73!ATOH8;;chr15:57511589..57511608,+!p4@TCF12!0.67!3.73!TCF12;;chr1:170632477..170632506,+!p6@PRRX1!0.67!3.63!PRRX1;;chr12:115121962..115121987,-!p1@TBX3!0.66!34.66!TBX3;;chr11:46299186..46299195,+!p3@CREB3L1!0.66!4.03!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.66!3.53!RFX8;;chr7:27196267..27196311,-!p1@HOXA7!0.65!3.43!HOXA7;;chr12:124873357..124873401,-!p1@NCOR2!0.64!46.35!NCOR2;;chr7:19157043..19157088,-!p2@TWIST1!0.64!9.47!TWIST1;;chr6:10412600..10412637,-!p1@TFAP2A!0.64!6.05!TFAP2A;;chr10:119302508..119302559,+!p5@EMX2!0.64!3.32!EMX2;;chr2:102091144..102091183,-!p2@RFX8!0.64!3.32!RFX8;;chr11:65687158..65687216,+!p4@DRAP1!0.63!22.06!DRAP1;;chr15:37392094..37392116,-!p6@MEIS2!0.63!4.23!MEIS2;;chr2:172967242..172967265,-!p2@DLX2!0.63!3.22!DLX2;;chr2:172967276..172967296,-!p3@DLX2!0.63!3.22!DLX2;;chr10:28032421..28032494,-!p2@MKX!0.63!3.22!MKX;;chr8:67525473..67525518,-!p1@MYBL1!0.62!8.16!MYBL1;;chr15:37392593..37392607,-!p13@MEIS2!0.62!3.93!MEIS2;;chr1:119530493..119530572,-!p1@TBX15!0.62!3.12!TBX15;;chr12:80085120..80085156,-!p14@PAWR!0.62!3.12!PAWR;;chr11:65686952..65686975,+!p5@DRAP1!0.61!20.25!DRAP1;;chr3:37217736..37217753,-!p2@LRRFIP2!0.61!15.11!LRRFIP2;;chr17:46622070..46622109,-!p1@HOXB2!0.61!7.76!HOXB2;;chr16:54964740..54964789,+!p1@IRX5!0.61!4.74!IRX5;;chr11:65687243..65687276,+!p8@DRAP1!0.61!4.43!DRAP1;;chr10:28035112..28035130,-!p5@MKX!0.60!3.02!MKX;;chr12:114843940..114843955,-!p2@TBX5!0.60!3.02!TBX5;;chr20:30193083..30193098,+!p1@ID1!0.59!290.17!ID1;;chr13:37494248..37494260,-!p3@SMAD9!0.59!2.92!SMAD9;;chr13:37494275..37494304,-!p2@SMAD9!0.59!2.92!SMAD9;;chr3:147111505..147111529,+!p6@ZIC1!0.59!2.92!ZIC1;;chr3:114343768..114343822,-!p1@ZBTB20!0.58!14.51!ZBTB20;;chr3:147110055..147110129,-!p1@ZIC4!0.58!2.82!ZIC4;;chr5:139492456..139492489,+!p7@PURA!0.58!2.82!PURA;;chr5:2751785..2751808,-!p2@IRX2!0.58!2.82!IRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.58!2.82!RUNX1T1;;chr17:46682321..46682362,-!p1@HOXB6!0.58!2.82!HOXB6;;chr14:62162285..62162296,+!p3@HIF1A!0.57!17.33!HIF1A;;chr2:85980951..85981004,+!p1@ATOH8!0.57!4.84!ATOH8;;chr16:86612320..86612394,+!p1@FOXL1!0.57!2.72!FOXL1;;chr20:42543441..42543497,+!p1@TOX2!0.56!14.51!TOX2;;chr10:114710244..114710257,+!p3@TCF7L2!0.56!8.36!TCF7L2;;chr1:197886646..197886657,+!p5@LHX9!0.56!2.62!LHX9;;chr18:52969674..52969685,-!p24@TCF4!0.56!2.62!TCF4;;chr2:119604456..119604501,-!p2@EN1!0.56!2.62!EN1;;chr10:63809106..63809127,+!p1@ARID5B!0.55!42.92!ARID5B;;chr14:24837368..24837401,+!p1@NFATC4!0.55!7.05!NFATC4;;chr17:46622114..46622138,-!p4@HOXB2!0.55!4.33!HOXB2;;chr6:1389789..1389821,+!p1@FOXF2!0.55!3.83!FOXF2;;chr12:54447599..54447630,+!p3@HOXC4!0.55!3.32!HOXC4;;chr15:37390374..37390422,-!p9@MEIS2!0.55!3.32!MEIS2;;chr12:54394309..54394336,+!p2@HOXC9!0.55!2.52!HOXC9;;chr3:52001448..52001478,-!p2@PCBP4!0.54!44.03!PCBP4;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.35!GLI2;;chr14:75894714..75894733,+!p1@JDP2!0.53!87.65!JDP2;;chr2:145275162..145275202,-!p2@ZEB2!0.53!17.53!ZEB2;;chr5:43067636..43067674,+!p6@ZNF131!0.53!3.53!ZNF131;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.53!2.62!GLIS1;;chr1:170632137..170632172,+!p10@PRRX1!0.53!2.42!PRRX1;;chr11:46316699..46316719,+!p10@CREB3L1!0.53!2.42!CREB3L1;;chr2:172967323..172967336,-!p4@DLX2!0.53!2.42!DLX2;;chr1:151032860..151032918,+!p1@MLLT11!0.52!35.16!MLLT11;;chr7:42276787..42276815,-!p1@GLI3!0.52!7.46!GLI3;;chr5:3595977..3595999,+!p1@IRX1!0.52!2.32!IRX1;;chr7:27212501..27212513,-!p5@HOXA10!0.52!2.32!HOXA10;;chrY:21906761..21906810,-!p2@KDM5D!0.52!2.32!KDM5D;;chr12:124873852..124873881,-!p3@NCOR2!0.51!17.33!NCOR2;;chr3:52001426..52001447,-!p3@PCBP4!0.51!7.66!PCBP4;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.65!EBF1;;chr1:200379104..200379128,-!p2@ZNF281!0.51!6.55!ZNF281;;chr13:37494365..37494381,-!p1@SMAD9!0.51!4.43!SMAD9;;chr7:27192185..27192209,-!p1@HOXA3!0.51!2.22!HOXA3;;chr2:5832508..5832524,+!p1@SOX11!0.51!2.22!SOX11;;chr11:65667846..65667868,-!p1@FOSL1!0.50!75.56!FOSL1;;chr6:31126291..31126399,+!p1@TCF19!0.50!27.00!TCF19;;chr2:66662281..66662308,+!p1@MEIS1!0.50!9.37!MEIS1;;chr21:36421535..36421610,-!p2@RUNX1!0.49!9.37!RUNX1;;chr17:46621937..46621966,-!p2@HOXB2!0.49!6.95!HOXB2;;chr20:42543506..42543549,+!p2@TOX2!0.49!6.15!TOX2;;chr2:200323414..200323455,-!p1@SATB2!0.49!5.34!SATB2;;chr8:67525524..67525543,-!p3@MYBL1!0.49!3.93!MYBL1;;chr1:164528911..164528940,+!p7@PBX1!0.49!3.53!PBX1;;chr1:170632439..170632465,+!p11@PRRX1!0.49!2.12!PRRX1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.49!2.12!RUNX1T1;;chr16:51185318..51185348,-!p2@SALL1!0.49!2.12!SALL1;;chr11:46333934..46333963,+!p5@CREB3L1!0.49!2.12!CREB3L1;;chr11:65686855..65686946,+!p1@DRAP1!0.48!205.64!DRAP1;;chr17:38256822..38256851,-!p1@NR1D1!0.48!21.36!NR1D1;;chr17:1958388..1958404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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416 | |||
|ffid_belonging_in_development=CL:0000134 | |ffid_belonging_in_development=CL:0000134 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520spinal%2520muscular%2520atrophy%252c%2520donor3.CNhs11912.11559-120D2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11559-120D2 | |id=FF:11559-120D2 | ||
|is_a=EFO:0002091;;FF:0000251 | |is_a=EFO:0002091;;FF:0000251 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11912 | |library_id=CNhs11912 | ||
| | |library_id_phase_based=2:CNhs11912 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11559 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11559 | |||
|name=Fibroblast - skin spinal muscular atrophy, donor3 | |name=Fibroblast - skin spinal muscular atrophy, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11912,LSID842,release014,COMPLETED | |profile_hcage=CNhs11912,LSID842,release014,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 89: | Line 101: | ||
|top_motifs=NKX3-1:1.72081120194;GZF1:1.49948821603;HBP1_HMGB_SSRP1_UBTF:1.49783702121;SRF:1.30517503992;HSF1,2:1.29311691066;NR3C1:1.26235620153;PDX1:1.25220712509;HOX{A5,B5}:1.18984184197;XBP1:1.16898496326;EN1,2:1.14822918908;KLF4:1.13369745986;GCM1,2:1.08223836262;GFI1:1.05633969145;ALX4:0.988014240387;NFE2L1:0.984025511628;GFI1B:0.969605424755;NKX3-2:0.948899177194;TEAD1:0.937859438089;UFEwm:0.912998927488;MAFB:0.903907332748;SOX17:0.896573027438;EBF1:0.881426118463;POU3F1..4:0.866720012565;NKX2-2,8:0.85775507055;MYBL2:0.840445413269;HES1:0.82935575848;TP53:0.815330967873;PRDM1:0.814024650594;ZNF238:0.806413534118;MYB:0.782078211158;ESR1:0.781155320769;PPARG:0.769133522753;TFAP4:0.767122075912;PAX8:0.762902579618;NFIX:0.752095852788;HMX1:0.745775024705;HIF1A:0.723180200379;PRRX1,2:0.687142797336;TFDP1:0.684698015856;POU1F1:0.680957221253;NANOG{mouse}:0.672236674275;ZBTB6:0.659627217917;TAL1_TCF{3,4,12}:0.657338640263;GTF2I:0.655990017459;MZF1:0.651910103193;RXR{A,B,G}:0.638307903935;TFCP2:0.623286686192;GTF2A1,2:0.595715575045;HMGA1,2:0.589656447417;MAZ:0.583092797326;RXRA_VDR{dimer}:0.562704560709;TFAP2{A,C}:0.561782729266;CRX:0.53147462548;EVI1:0.53083184564;ELK1,4_GABP{A,B1}:0.525758268467;LEF1_TCF7_TCF7L1,2:0.520252414027;SMAD1..7,9:0.504209021139;ZNF384:0.49724361416;TBX4,5:0.487790612401;ATF6:0.463901141251;TLX1..3_NFIC{dimer}:0.46340226905;MTE{core}:0.4605169222;IKZF1:0.459957276258;NFATC1..3:0.45439015411;ZIC1..3:0.424971782416;YY1:0.418721579763;E2F1..5:0.409256380855;NRF1:0.404019581997;FOXD3:0.40066792557;GATA4:0.392940041143;NFE2L2:0.372022611815;FOXL1:0.312063194585;MEF2{A,B,C,D}:0.311717891906;STAT1,3:0.306369894183;ZNF148:0.305619467903;ZNF143:0.305116068995;HOX{A4,D4}:0.299739288088;BACH2:0.298796798115;POU5F1:0.295366432631;NR1H4:0.277440287032;CDC5L:0.27580326482;TBP:0.271335054536;XCPE1{core}:0.249051416518;EP300:0.248703444588;TFAP2B:0.244542345761;DMAP1_NCOR{1,2}_SMARC:0.226529262216;SPZ1:0.190375142238;T:0.18608247183;AHR_ARNT_ARNT2:0.174819767072;HLF:0.169471609672;NFY{A,B,C}:0.159412407077;ARID5B:0.149611775466;LHX3,4:0.145638492559;TEF:0.129172263269;HAND1,2:0.106977779257;PAX1,9:0.102494491546;PATZ1:0.0861637868515;NKX2-3_NKX2-5:0.0765485180519;NFE2:0.0497223318791;FOS_FOS{B,L1}_JUN{B,D}:0.0349329370187;JUN:0.033738769315;PAX5:0.013954135291;NKX6-1,2:-0.0220117318857;FOXM1:-0.0345109137548;TOPORS:-0.0432804211826;HIC1:-0.0433789782971;SOX2:-0.0449098494298;RUNX1..3:-0.0777100888846;FOSL2:-0.0842787322943;RREB1:-0.088135762934;GLI1..3:-0.0886692742073;RFX1:-0.095368754228;FOX{I1,J2}:-0.100891228675;HNF1A:-0.151495599511;ADNP_IRX_SIX_ZHX:-0.163587385045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.168499804511;TGIF1:-0.171520076131;ELF1,2,4:-0.176118447947;AIRE:-0.1838735713;SOX5:-0.213013678654;NHLH1,2:-0.215500947651;PAX3,7:-0.216439615098;HOXA9_MEIS1:-0.216941578887;MED-1{core}:-0.260865901222;NANOG:-0.279565807897;MYFfamily:-0.296079710643;FOXO1,3,4:-0.313939916106;NR5A1,2:-0.315612124328;HNF4A_NR2F1,2:-0.316228220209;EGR1..3:-0.323346916623;CEBPA,B_DDIT3:-0.331175615323;BPTF:-0.331579950253;ZFP161:-0.332450266633;VSX1,2:-0.345709438053;NFIL3:-0.360574755953;SPI1:-0.370925688957;PAX4:-0.371078951545;OCT4_SOX2{dimer}:-0.395160838678;FOXA2:-0.398222245675;ETS1,2:-0.399580712619;SP1:-0.403506450322;NR6A1:-0.403911949117;POU6F1:-0.408094971497;REST:-0.422542949165;PAX2:-0.426746011103;MTF1:-0.434531267984;SPIB:-0.441921522888;STAT2,4,6:-0.444579564182;ONECUT1,2:-0.462346908805;IRF1,2:-0.464233295019;PBX1:-0.467801746795;CUX2:-0.473645944132;FOXN1:-0.47783669321;ESRRA:-0.487002119278;PAX6:-0.498580103196;CREB1:-0.498918556338;SOX{8,9,10}:-0.511503231549;NFKB1_REL_RELA:-0.541216174829;ZNF423:-0.558295562816;AR:-0.568036086583;ALX1:-0.591386460597;STAT5{A,B}:-0.600824831347;ATF5_CREB3:-0.609071854602;FOX{D1,D2}:-0.612190929651;NKX2-1,4:-0.625016102587;FOXP1:-0.662257626078;TLX2:-0.664905349878;DBP:-0.683897528393;HOX{A6,A7,B6,B7}:-0.683909192374;POU2F1..3:-0.696401636079;ATF4:-0.715548316392;BREu{core}:-0.73179128326;SNAI1..3:-0.732262586825;RFX2..5_RFXANK_RFXAP:-0.732331909207;bHLH_family:-0.741548621015;FOXP3:-0.750549555867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.763786964309;FOXQ1:-0.770872770943;SREBF1,2:-0.781335157953;PITX1..3:-0.78669889628;GATA6:-0.841439430953;IRF7:-0.848370942999;ATF2:-0.849451704236;ZBTB16:-0.905886780207;RORA:-0.939220919533;ZEB1:-0.953635316194;FOX{F1,F2,J1}:-1.01221367054;RBPJ:-1.05651490772;IKZF2:-1.06214738977;LMO2:-1.14554714614;CDX1,2,4:-1.15501233188;MYOD1:-1.21301425828 | |top_motifs=NKX3-1:1.72081120194;GZF1:1.49948821603;HBP1_HMGB_SSRP1_UBTF:1.49783702121;SRF:1.30517503992;HSF1,2:1.29311691066;NR3C1:1.26235620153;PDX1:1.25220712509;HOX{A5,B5}:1.18984184197;XBP1:1.16898496326;EN1,2:1.14822918908;KLF4:1.13369745986;GCM1,2:1.08223836262;GFI1:1.05633969145;ALX4:0.988014240387;NFE2L1:0.984025511628;GFI1B:0.969605424755;NKX3-2:0.948899177194;TEAD1:0.937859438089;UFEwm:0.912998927488;MAFB:0.903907332748;SOX17:0.896573027438;EBF1:0.881426118463;POU3F1..4:0.866720012565;NKX2-2,8:0.85775507055;MYBL2:0.840445413269;HES1:0.82935575848;TP53:0.815330967873;PRDM1:0.814024650594;ZNF238:0.806413534118;MYB:0.782078211158;ESR1:0.781155320769;PPARG:0.769133522753;TFAP4:0.767122075912;PAX8:0.762902579618;NFIX:0.752095852788;HMX1:0.745775024705;HIF1A:0.723180200379;PRRX1,2:0.687142797336;TFDP1:0.684698015856;POU1F1:0.680957221253;NANOG{mouse}:0.672236674275;ZBTB6:0.659627217917;TAL1_TCF{3,4,12}:0.657338640263;GTF2I:0.655990017459;MZF1:0.651910103193;RXR{A,B,G}:0.638307903935;TFCP2:0.623286686192;GTF2A1,2:0.595715575045;HMGA1,2:0.589656447417;MAZ:0.583092797326;RXRA_VDR{dimer}:0.562704560709;TFAP2{A,C}:0.561782729266;CRX:0.53147462548;EVI1:0.53083184564;ELK1,4_GABP{A,B1}:0.525758268467;LEF1_TCF7_TCF7L1,2:0.520252414027;SMAD1..7,9:0.504209021139;ZNF384:0.49724361416;TBX4,5:0.487790612401;ATF6:0.463901141251;TLX1..3_NFIC{dimer}:0.46340226905;MTE{core}:0.4605169222;IKZF1:0.459957276258;NFATC1..3:0.45439015411;ZIC1..3:0.424971782416;YY1:0.418721579763;E2F1..5:0.409256380855;NRF1:0.404019581997;FOXD3:0.40066792557;GATA4:0.392940041143;NFE2L2:0.372022611815;FOXL1:0.312063194585;MEF2{A,B,C,D}:0.311717891906;STAT1,3:0.306369894183;ZNF148:0.305619467903;ZNF143:0.305116068995;HOX{A4,D4}:0.299739288088;BACH2:0.298796798115;POU5F1:0.295366432631;NR1H4:0.277440287032;CDC5L:0.27580326482;TBP:0.271335054536;XCPE1{core}:0.249051416518;EP300:0.248703444588;TFAP2B:0.244542345761;DMAP1_NCOR{1,2}_SMARC:0.226529262216;SPZ1:0.190375142238;T:0.18608247183;AHR_ARNT_ARNT2:0.174819767072;HLF:0.169471609672;NFY{A,B,C}:0.159412407077;ARID5B:0.149611775466;LHX3,4:0.145638492559;TEF:0.129172263269;HAND1,2:0.106977779257;PAX1,9:0.102494491546;PATZ1:0.0861637868515;NKX2-3_NKX2-5:0.0765485180519;NFE2:0.0497223318791;FOS_FOS{B,L1}_JUN{B,D}:0.0349329370187;JUN:0.033738769315;PAX5:0.013954135291;NKX6-1,2:-0.0220117318857;FOXM1:-0.0345109137548;TOPORS:-0.0432804211826;HIC1:-0.0433789782971;SOX2:-0.0449098494298;RUNX1..3:-0.0777100888846;FOSL2:-0.0842787322943;RREB1:-0.088135762934;GLI1..3:-0.0886692742073;RFX1:-0.095368754228;FOX{I1,J2}:-0.100891228675;HNF1A:-0.151495599511;ADNP_IRX_SIX_ZHX:-0.163587385045;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.168499804511;TGIF1:-0.171520076131;ELF1,2,4:-0.176118447947;AIRE:-0.1838735713;SOX5:-0.213013678654;NHLH1,2:-0.215500947651;PAX3,7:-0.216439615098;HOXA9_MEIS1:-0.216941578887;MED-1{core}:-0.260865901222;NANOG:-0.279565807897;MYFfamily:-0.296079710643;FOXO1,3,4:-0.313939916106;NR5A1,2:-0.315612124328;HNF4A_NR2F1,2:-0.316228220209;EGR1..3:-0.323346916623;CEBPA,B_DDIT3:-0.331175615323;BPTF:-0.331579950253;ZFP161:-0.332450266633;VSX1,2:-0.345709438053;NFIL3:-0.360574755953;SPI1:-0.370925688957;PAX4:-0.371078951545;OCT4_SOX2{dimer}:-0.395160838678;FOXA2:-0.398222245675;ETS1,2:-0.399580712619;SP1:-0.403506450322;NR6A1:-0.403911949117;POU6F1:-0.408094971497;REST:-0.422542949165;PAX2:-0.426746011103;MTF1:-0.434531267984;SPIB:-0.441921522888;STAT2,4,6:-0.444579564182;ONECUT1,2:-0.462346908805;IRF1,2:-0.464233295019;PBX1:-0.467801746795;CUX2:-0.473645944132;FOXN1:-0.47783669321;ESRRA:-0.487002119278;PAX6:-0.498580103196;CREB1:-0.498918556338;SOX{8,9,10}:-0.511503231549;NFKB1_REL_RELA:-0.541216174829;ZNF423:-0.558295562816;AR:-0.568036086583;ALX1:-0.591386460597;STAT5{A,B}:-0.600824831347;ATF5_CREB3:-0.609071854602;FOX{D1,D2}:-0.612190929651;NKX2-1,4:-0.625016102587;FOXP1:-0.662257626078;TLX2:-0.664905349878;DBP:-0.683897528393;HOX{A6,A7,B6,B7}:-0.683909192374;POU2F1..3:-0.696401636079;ATF4:-0.715548316392;BREu{core}:-0.73179128326;SNAI1..3:-0.732262586825;RFX2..5_RFXANK_RFXAP:-0.732331909207;bHLH_family:-0.741548621015;FOXP3:-0.750549555867;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.763786964309;FOXQ1:-0.770872770943;SREBF1,2:-0.781335157953;PITX1..3:-0.78669889628;GATA6:-0.841439430953;IRF7:-0.848370942999;ATF2:-0.849451704236;ZBTB16:-0.905886780207;RORA:-0.939220919533;ZEB1:-0.953635316194;FOX{F1,F2,J1}:-1.01221367054;RBPJ:-1.05651490772;IKZF2:-1.06214738977;LMO2:-1.14554714614;CDX1,2,4:-1.15501233188;MYOD1:-1.21301425828 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11559-120D2;search_select_hide=table117:FF:11559-120D2 | |||
}} | }} |
Latest revision as of 18:09, 4 June 2020
Name: | Fibroblast - skin spinal muscular atrophy, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11912 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11912
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11912
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.431 |
10 | 10 | 0.857 |
100 | 100 | 0.58 |
101 | 101 | 0.292 |
102 | 102 | 0.171 |
103 | 103 | 0.626 |
104 | 104 | 0.953 |
105 | 105 | 0.684 |
106 | 106 | 0.119 |
107 | 107 | 0.986 |
108 | 108 | 0.826 |
109 | 109 | 0.698 |
11 | 11 | 0.696 |
110 | 110 | 0.663 |
111 | 111 | 0.507 |
112 | 112 | 0.949 |
113 | 113 | 0.00199 |
114 | 114 | 0.907 |
115 | 115 | 0.435 |
116 | 116 | 0.28 |
117 | 117 | 0.391 |
118 | 118 | 0.637 |
119 | 119 | 0.192 |
12 | 12 | 0.776 |
120 | 120 | 0.638 |
121 | 121 | 0.591 |
122 | 122 | 0.217 |
123 | 123 | 3.90308e-5 |
124 | 124 | 0.316 |
125 | 125 | 0.413 |
126 | 126 | 0.405 |
127 | 127 | 0.828 |
128 | 128 | 0.292 |
129 | 129 | 0.506 |
13 | 13 | 0.689 |
130 | 130 | 0.0504 |
131 | 131 | 0.506 |
132 | 132 | 0.68 |
133 | 133 | 0.496 |
134 | 134 | 0.208 |
135 | 135 | 0.543 |
136 | 136 | 0.16 |
137 | 137 | 0.915 |
138 | 138 | 0.259 |
139 | 139 | 0.0331 |
14 | 14 | 0.248 |
140 | 140 | 0.145 |
141 | 141 | 0.038 |
142 | 142 | 0.676 |
143 | 143 | 0.917 |
144 | 144 | 0.559 |
145 | 145 | 0.755 |
146 | 146 | 0.949 |
147 | 147 | 0.264 |
148 | 148 | 0.0209 |
149 | 149 | 0.0346 |
15 | 15 | 0.465 |
150 | 150 | 0.502 |
151 | 151 | 0.33 |
152 | 152 | 0.146 |
153 | 153 | 0.614 |
154 | 154 | 0.412 |
155 | 155 | 0.00956 |
156 | 156 | 0.659 |
157 | 157 | 0.149 |
158 | 158 | 0.00251 |
159 | 159 | 0.171 |
16 | 16 | 0.487 |
160 | 160 | 0.851 |
161 | 161 | 0.0656 |
162 | 162 | 0.726 |
163 | 163 | 0.344 |
164 | 164 | 0.341 |
165 | 165 | 0.16 |
166 | 166 | 0.0607 |
167 | 167 | 0.496 |
168 | 168 | 0.31 |
169 | 169 | 0.226 |
17 | 17 | 0.966 |
18 | 18 | 0.239 |
19 | 19 | 0.0258 |
2 | 2 | 0.403 |
20 | 20 | 0.354 |
21 | 21 | 0.137 |
22 | 22 | 0.431 |
23 | 23 | 0.975 |
24 | 24 | 0.985 |
25 | 25 | 0.604 |
26 | 26 | 0.897 |
27 | 27 | 0.942 |
28 | 28 | 0.522 |
29 | 29 | 0.759 |
3 | 3 | 0.805 |
30 | 30 | 0.227 |
31 | 31 | 0.964 |
32 | 32 | 7.88631e-6 |
33 | 33 | 0.353 |
34 | 34 | 0.968 |
35 | 35 | 0.386 |
36 | 36 | 0.0722 |
37 | 37 | 0.43 |
38 | 38 | 0.56 |
39 | 39 | 0.401 |
4 | 4 | 0.802 |
40 | 40 | 0.26 |
41 | 41 | 0.465 |
42 | 42 | 0.729 |
43 | 43 | 0.652 |
44 | 44 | 0.985 |
45 | 45 | 0.9 |
46 | 46 | 0.856 |
47 | 47 | 0.72 |
48 | 48 | 0.645 |
49 | 49 | 0.105 |
5 | 5 | 0.699 |
50 | 50 | 0.725 |
51 | 51 | 0.615 |
52 | 52 | 0.709 |
53 | 53 | 0.259 |
54 | 54 | 0.981 |
55 | 55 | 0.382 |
56 | 56 | 0.749 |
57 | 57 | 0.514 |
58 | 58 | 0.202 |
59 | 59 | 0.294 |
6 | 6 | 0.575 |
60 | 60 | 0.296 |
61 | 61 | 0.265 |
62 | 62 | 0.456 |
63 | 63 | 0.719 |
64 | 64 | 0.554 |
65 | 65 | 0.861 |
66 | 66 | 0.431 |
67 | 67 | 0.623 |
68 | 68 | 0.712 |
69 | 69 | 0.762 |
7 | 7 | 0.131 |
70 | 70 | 0.139 |
71 | 71 | 0.959 |
72 | 72 | 0.227 |
73 | 73 | 0.138 |
74 | 74 | 0.105 |
75 | 75 | 0.556 |
76 | 76 | 0.457 |
77 | 77 | 0.0656 |
78 | 78 | 0.233 |
79 | 79 | 0.17 |
8 | 8 | 0.993 |
80 | 80 | 0.596 |
81 | 81 | 0.49 |
82 | 82 | 0.922 |
83 | 83 | 0.2 |
84 | 84 | 0.278 |
85 | 85 | 0.685 |
86 | 86 | 0.4 |
87 | 87 | 0.188 |
88 | 88 | 0.741 |
89 | 89 | 0.36 |
9 | 9 | 0.83 |
90 | 90 | 0.685 |
91 | 91 | 0.771 |
92 | 92 | 0.805 |
93 | 93 | 0.32 |
94 | 94 | 0.974 |
95 | 95 | 0.944 |
96 | 96 | 0.922 |
97 | 97 | 0.581 |
98 | 98 | 0.154 |
99 | 99 | 0.0669 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11912
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000251 human fibroblast - skin spinal muscular atrophy sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)