FF:11450-119A1: Difference between revisions

Latest revision as of 18:01, 4 June 2020

Name:	Fibroblast - Dermal, donor4
Species:	Human (Homo sapiens)
Library ID:	CNhs12052
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	fetus
sex	unknown
age	fetal
cell type	fibroblast
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	243
catalog number	SC2305
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005148

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12052		CAGE		DRX008257		DRR009129

Accession ID Hg19

Library id		BAM		CTSS
CNhs12052		DRZ000554		DRZ001939

Accession ID Hg38

Library id		BAM		CTSS
CNhs12052		DRZ011904		DRZ013289

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.167
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.569
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0191
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.095
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.395
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0482
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.382
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.235
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.261
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.845
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00667
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.525
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0916
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0482
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0482
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.422
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0916
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.411
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12052

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0253
MA0003.1	MA0003.1	0.353
MA0004.1	MA0004.1	0.973
MA0006.1	MA0006.1	0.752
MA0007.1	MA0007.1	0.51
MA0009.1	MA0009.1	0.106
MA0014.1	MA0014.1	0.979
MA0017.1	MA0017.1	0.127
MA0018.2	MA0018.2	0.537
MA0019.1	MA0019.1	0.44
MA0024.1	MA0024.1	1.26329e-8
MA0025.1	MA0025.1	0.505
MA0027.1	MA0027.1	0.68
MA0028.1	MA0028.1	3.37062e-4
MA0029.1	MA0029.1	0.829
MA0030.1	MA0030.1	0.00289
MA0031.1	MA0031.1	0.00871
MA0035.2	MA0035.2	0.0387
MA0038.1	MA0038.1	4.84918e-4
MA0039.2	MA0039.2	0.669
MA0040.1	MA0040.1	0.682
MA0041.1	MA0041.1	0.318
MA0042.1	MA0042.1	0.341
MA0043.1	MA0043.1	0.303
MA0046.1	MA0046.1	0.361
MA0047.2	MA0047.2	0.451
MA0048.1	MA0048.1	9.39688e-4
MA0050.1	MA0050.1	9.58613e-7
MA0051.1	MA0051.1	1.69048e-5
MA0052.1	MA0052.1	0.783
MA0055.1	MA0055.1	6.71979e-4
MA0057.1	MA0057.1	0.662
MA0058.1	MA0058.1	0.732
MA0059.1	MA0059.1	0.634
MA0060.1	MA0060.1	2.20524e-13
MA0061.1	MA0061.1	0.00209
MA0062.2	MA0062.2	0.0386
MA0065.2	MA0065.2	0.0677
MA0066.1	MA0066.1	0.227
MA0067.1	MA0067.1	0.145
MA0068.1	MA0068.1	0.792
MA0069.1	MA0069.1	0.794
MA0070.1	MA0070.1	0.112
MA0071.1	MA0071.1	0.85
MA0072.1	MA0072.1	0.951
MA0073.1	MA0073.1	0.593
MA0074.1	MA0074.1	0.661
MA0076.1	MA0076.1	4.29574e-4
MA0077.1	MA0077.1	0.809
MA0078.1	MA0078.1	0.93
MA0079.2	MA0079.2	0.469
MA0080.2	MA0080.2	8.04581e-11
MA0081.1	MA0081.1	0.199
MA0083.1	MA0083.1	0.414
MA0084.1	MA0084.1	0.164
MA0087.1	MA0087.1	0.56
MA0088.1	MA0088.1	0.00124
MA0090.1	MA0090.1	0.844
MA0091.1	MA0091.1	0.404
MA0092.1	MA0092.1	0.194
MA0093.1	MA0093.1	0.937
MA0099.2	MA0099.2	0.579
MA0100.1	MA0100.1	0.0423
MA0101.1	MA0101.1	0.119
MA0102.2	MA0102.2	0.00715
MA0103.1	MA0103.1	2.40151e-4
MA0104.2	MA0104.2	0.0818
MA0105.1	MA0105.1	0.0081
MA0106.1	MA0106.1	0.204
MA0107.1	MA0107.1	0.00843
MA0108.2	MA0108.2	0.325
MA0111.1	MA0111.1	0.563
MA0112.2	MA0112.2	3.8312e-4
MA0113.1	MA0113.1	0.938
MA0114.1	MA0114.1	0.393
MA0115.1	MA0115.1	0.833
MA0116.1	MA0116.1	0.119
MA0117.1	MA0117.1	0.804
MA0119.1	MA0119.1	0.816
MA0122.1	MA0122.1	0.278
MA0124.1	MA0124.1	0.757
MA0125.1	MA0125.1	0.414
MA0131.1	MA0131.1	0.132
MA0135.1	MA0135.1	0.495
MA0136.1	MA0136.1	2.61183e-6
MA0137.2	MA0137.2	0.121
MA0138.2	MA0138.2	0.529
MA0139.1	MA0139.1	0.545
MA0140.1	MA0140.1	0.236
MA0141.1	MA0141.1	0.938
MA0142.1	MA0142.1	0.121
MA0143.1	MA0143.1	0.41
MA0144.1	MA0144.1	0.0568
MA0145.1	MA0145.1	0.0488
MA0146.1	MA0146.1	0.375
MA0147.1	MA0147.1	0.145
MA0148.1	MA0148.1	0.288
MA0149.1	MA0149.1	0.995
MA0150.1	MA0150.1	0.0945
MA0152.1	MA0152.1	0.0407
MA0153.1	MA0153.1	0.461
MA0154.1	MA0154.1	0.00471
MA0155.1	MA0155.1	0.133
MA0156.1	MA0156.1	0.142
MA0157.1	MA0157.1	0.0111
MA0159.1	MA0159.1	0.0107
MA0160.1	MA0160.1	0.181
MA0162.1	MA0162.1	0.524
MA0163.1	MA0163.1	0.646
MA0164.1	MA0164.1	0.937
MA0258.1	MA0258.1	0.00131
MA0259.1	MA0259.1	0.238

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12052

Novel motif	Logo	P-value
1	1	0.366
10	10	0.348
100	100	0.927
101	101	0.387
102	102	0.54
103	103	0.217
104	104	0.799
105	105	0.979
106	106	8.33331e-5
107	107	0.0944
108	108	0.183
109	109	0.751
11	11	0.823
110	110	0.687
111	111	0.971
112	112	0.0319
113	113	0.00552
114	114	0.195
115	115	0.728
116	116	0.695
117	117	0.88
118	118	0.909
119	119	0.118
12	12	0.797
120	120	0.201
121	121	0.628
122	122	0.23
123	123	0.0414
124	124	0.253
125	125	0.819
126	126	0.78
127	127	0.297
128	128	0.0117
129	129	0.113
13	13	0.943
130	130	0.0163
131	131	0.313
132	132	0.883
133	133	0.679
134	134	0.605
135	135	0.0329
136	136	0.239
137	137	0.123
138	138	0.102
139	139	1.10283e-5
14	14	0.194
140	140	0.978
141	141	0.808
142	142	0.674
143	143	0.37
144	144	0.534
145	145	0.982
146	146	0.715
147	147	0.964
148	148	0.236
149	149	0.233
15	15	0.167
150	150	0.911
151	151	0.138
152	152	0.0594
153	153	0.218
154	154	0.546
155	155	0.0292
156	156	0.548
157	157	0.103
158	158	0.029
159	159	0.0444
16	16	0.77
160	160	0.96
161	161	0.562
162	162	0.448
163	163	0.653
164	164	0.681
165	165	0.466
166	166	0.854
167	167	0.337
168	168	0.457
169	169	0.0628
17	17	0.19
18	18	0.799
19	19	0.554
2	2	0.574
20	20	0.353
21	21	0.279
22	22	0.377
23	23	0.0209
24	24	0.857
25	25	0.736
26	26	0.973
27	27	0.514
28	28	0.555
29	29	0.795
3	3	0.539
30	30	0.758
31	31	0.647
32	32	0.839
33	33	0.444
34	34	0.306
35	35	0.502
36	36	0.339
37	37	0.396
38	38	0.262
39	39	0.794
4	4	0.232
40	40	0.211
41	41	0.129
42	42	0.741
43	43	0.236
44	44	0.806
45	45	0.0803
46	46	0.281
47	47	0.916
48	48	0.843
49	49	0.181
5	5	0.0968
50	50	0.779
51	51	0.481
52	52	0.0812
53	53	0.156
54	54	0.439
55	55	0.421
56	56	0.678
57	57	0.614
58	58	0.149
59	59	0.306
6	6	0.661
60	60	0.022
61	61	0.948
62	62	0.122
63	63	0.552
64	64	0.653
65	65	0.119
66	66	0.0387
67	67	0.75
68	68	0.995
69	69	0.883
7	7	0.336
70	70	0.00439
71	71	0.62
72	72	0.211
73	73	0.448
74	74	0.242
75	75	0.413
76	76	0.837
77	77	0.541
78	78	0.428
79	79	0.546
8	8	0.646
80	80	0.105
81	81	0.394
82	82	0.0187
83	83	0.306
84	84	0.934
85	85	0.00673
86	86	0.542
87	87	0.0993
88	88	0.492
89	89	0.0921
9	9	0.63
90	90	0.666
91	91	0.348
92	92	0.0887
93	93	0.895
94	94	0.336
95	95	0.429
96	96	0.288
97	97	0.672
98	98	0.184
99	99	0.0626

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12052

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000062 human dermal fibroblast sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)
0002551 (fibroblast of dermis)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0010317 (germ layer / neural crest derived structure)
0002067 (dermis)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000062 (human dermal fibroblast sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008149
+|DRA_sample_Accession=CAGE@SAMD00005148
-|accession_numbers=CAGE;DRX008257;DRR009129;DRZ000554;DRZ001939
+|accession_numbers=CAGE;DRX008257;DRR009129;DRZ000554;DRZ001939;DRZ011904;DRZ013289
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0010317,UBERON:0002067,UBERON:0002416
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620,CL:0002551
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.73!141.39!TWIST1;;chr1:170632285..170632309,+!p1@PRRX1!1.54!38.28!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.52!32.41!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.42!34.41!PRRX1;;chr12:66218255..66218304,+!p3@HMGA2!1.38!60.13!HMGA2;;chr19:46801639..46801699,+!p1@HIF3A!1.32!19.85!HIF3A;;chr6:34204921..34204939,+!p3@HMGA1!1.31!558.64!HMGA1;;chr5:2751762..2751784,-!p1@IRX2!1.30!18.91!IRX2;;chr6:85474299..85474324,-!p1@TBX18!1.25!30.06!TBX18;;chr1:170633262..170633285,+!p3@PRRX1!1.19!16.44!PRRX1;;chr12:66218212..66218244,+!p5@HMGA2!1.18!20.32!HMGA2;;chr2:239756671..239756732,+!p1@TWIST2!1.17!44.16!TWIST2;;chr12:66218598..66218645,+!p2@HMGA2!1.16!62.24!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!1.16!23.02!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!1.13!21.26!TCF12;;chr20:55204351..55204377,+!p1@TFAP2C!1.13!15.97!TFAP2C;;chr15:83953397..83953425,-!p1@BNC1!1.11!13.62!BNC1;;chr2:102091566..102091581,-!p1@RFX8!1.11!11.98!RFX8;;chr2:5832508..5832524,+!p1@SOX11!1.10!11.51!SOX11;;chr12:66218183..66218209,+!p4@HMGA2!1.06!20.20!HMGA2;;chr17:46667594..46667619,-!p1@HOXB3!1.03!9.75!HOXB3;;chr6:85473156..85473210,-!p2@TBX18!1.02!11.51!TBX18;;chr2:176994408..176994492,+!p1@HOXD8!1.02!9.51!HOXD8;;chr17:46675558..46675577,-!p2@HOXB6!1.01!9.28!HOXB6;;chr18:52969844..52969895,-!p27@TCF4!1.01!9.16!TCF4;;chr5:72744594..72744609,-!p1@FOXD1!0.99!40.87!FOXD1;;chr7:27205136..27205164,-!p1@HOXA9!0.99!8.81!HOXA9;;chr12:54402745..54402788,+!p1@HOXC8!0.96!8.22!HOXC8;;chr17:46675420..46675465,-!p3@HOXB6!0.95!9.28!HOXB6;;chr7:14029283..14029311,-!p1@ETV1!0.94!42.98!ETV1;;chr20:42543441..42543497,+!p1@TOX2!0.93!34.76!TOX2;;chr17:46682321..46682362,-!p1@HOXB6!0.93!7.52!HOXB6;;chr1:170632137..170632172,+!p10@PRRX1!0.92!7.28!PRRX1;;chr3:12329358..12329393,+!p3@PPARG!0.91!18.32!PPARG;;chr17:46667628..46667642,-!p2@HOXB3!0.91!7.05!HOXB3;;chr18:52969674..52969685,-!p24@TCF4!0.91!7.05!TCF4;;chr12:54393880..54393962,+!p1@HOXC9!0.91!7.05!HOXC9;;chr8:93074803..93074845,-!p1@RUNX1T1!0.91!7.05!RUNX1T1;;chr1:170632250..170632277,+!p7@PRRX1!0.90!6.93!PRRX1;;chr17:46622114..46622138,-!p4@HOXB2!0.89!10.69!HOXB2;;chr17:41622765..41622821,-!p2@ETV4!0.89!10.57!ETV4;;chr4:299227..299272,-!p1@ZNF732!0.89!6.81!ZNF732;;chr1:170632477..170632506,+!p6@PRRX1!0.89!6.69!PRRX1;;chr17:41277372..41277418,-!p1@BRCA1!0.88!25.13!BRCA1;;chr2:19558373..19558392,-!p1@OSR1!0.87!18.44!OSR1;;chr4:174450089..174450153,-!p2@HAND2!0.87!6.46!HAND2;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.44!HOXB2;;chr17:41623009..41623053,-!p4@ETV4!0.86!10.33!ETV4;;chr17:46622205..46622218,-!p3@HOXB2!0.86!7.40!HOXB2;;chr2:102091144..102091183,-!p2@RFX8!0.86!6.22!RFX8;;chr7:27205106..27205134,-!p2@HOXA9!0.86!6.22!HOXA9;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.86!6.22!HOXC5;;chr1:170632723..170632739,+!p8@PRRX1!0.84!5.99!PRRX1;;chr17:46690839..46690884,-!p1@HOXB8!0.84!5.87!HOXB8;;chr22:19748231..19748317,+!p1@TBX1!0.84!5.87!TBX1;;chr6:85474198..85474212,-!p3@TBX18!0.84!5.87!TBX18;;chr11:46299199..46299233,+!p1@CREB3L1!0.83!31.82!CREB3L1;;chr11:65686732..65686756,+!p2@DRAP1!0.83!25.84!DRAP1;;chr8:93074848..93074871,-!p3@RUNX1T1!0.83!5.75!RUNX1T1;;chr11:65667846..65667868,-!p1@FOSL1!0.81!154.54!FOSL1;;chr7:19157043..19157088,-!p2@TWIST1!0.81!14.44!TWIST1;;chr12:66218378..66218401,+!p6@HMGA2!0.81!8.81!HMGA2;;chr4:174451370..174451387,-!p1@HAND2!0.81!5.40!HAND2;;chr6:34204672..34204692,+!p1@HMGA1!0.80!652.11!HMGA1;;chr2:200322654..200322707,-!p2@SATB2!0.80!7.99!SATB2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.80!5.75!GLIS1;;chr12:2986206..2986258,-!p2@FOXM1!0.79!33.70!FOXM1;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.64!SHOX2;;chr16:86612320..86612394,+!p1@FOXL1!0.79!5.17!FOXL1;;chr17:46622229..46622257,-!p6@HOXB2!0.77!5.87!HOXB2;;chr2:223163706..223163730,-!p1@PAX3!0.77!4.93!PAX3;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.93!IRX1;;chr14:61116183..61116208,-!p1@SIX1!0.76!19.85!SIX1;;chr3:12329397..12329433,+!p2@PPARG!0.76!11.51!PPARG;;chr6:45390025..45390076,+!p2@RUNX2!0.75!11.98!RUNX2;;chr20:42543506..42543549,+!p2@TOX2!0.74!11.74!TOX2;;chr9:132427972..132428056,+!p1@PRRX2!0.74!5.99!PRRX2;;chr12:54378923..54378966,+!p1@HOXC10!0.74!4.46!HOXC10;;chr10:119303078..119303169,+!p2@EMX2!0.73!4.35!EMX2;;chr12:54447637..54447659,+!p4@HOXC4!0.72!4.23!HOXC4;;chr12:96588143..96588185,+!p1@ELK3!0.71!56.37!ELK3;;chr12:66218443..66218461,+!p8@HMGA2!0.71!5.40!HMGA2;;chr5:2751785..2751808,-!p2@IRX2!0.71!4.11!IRX2;;chr7:27224842..27224872,-!p1@HOXA11!0.71!4.11!HOXA11;;chr8:49833978..49833996,-!p1@SNAI2!0.70!94.07!SNAI2;;chr5:158526917..158526932,-!p1@EBF1!0.70!10.92!EBF1;;chr1:8934931..8934947,-!p4@ENO1!0.69!14.33!ENO1;;chr12:66218152..66218174,+!p10@HMGA2!0.69!4.23!HMGA2;;chr12:54379029..54379057,+!p2@HOXC10!0.69!3.88!HOXC10;;chr12:115121962..115121987,-!p1@TBX3!0.68!36.29!TBX3;;chr1:170632439..170632465,+!p11@PRRX1!0.68!3.76!PRRX1;;chr8:128748308..128748324,+!p2@MYC!0.67!119.55!MYC;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.67!19.02!TAL1;;chr3:141121847..141121868,+!p5@ZBTB38!0.67!5.99!ZBTB38;;chr4:81118647..81118666,+!p1@PRDM8!0.67!5.05!PRDM8;;chr2:102091590..102091601,-!p5@RFX8!0.67!3.64!RFX8;;chr17:46675469..46675481,-!p4@HOXB6!0.67!3.64!HOXB6;;chr12:54394309..54394336,+!p2@HOXC9!0.67!3.64!HOXC9;;chr12:54402790..54402805,+!p2@HOXC8!0.67!3.64!HOXC8;;chr12:66218420..66218439,+!p12@HMGA2!0.67!3.64!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.69!DRAP1;;chr17:46675586..46675600,-!p6@HOXB6!0.66!3.52!HOXB6;;chrX:106960285..106960299,-!p1@TSC22D3!0.65!109.57!TSC22D3;;chr17:41622925..41622976,-!p3@ETV4!0.65!5.52!ETV4;;chr17:46687959..46688007,-!p2@HOXB7!0.65!5.05!HOXB7;;chr1:170632959..170632987,+!p4@PRRX1!0.65!3.88!PRRX1;;chr12:2986275..2986363,-!p1@FOXM1!0.64!40.05!FOXM1;;chr6:31126291..31126399,+!p1@TCF19!0.64!37.58!TCF19;;chr8:49833948..49833973,-!p2@SNAI2!0.64!24.90!SNAI2;;chr19:22817119..22817145,+!p1@ZNF492!0.64!6.11!ZNF492;;chr11:46299539..46299620,+!p2@CREB3L1!0.64!6.11!CREB3L1;;chr17:46675539..46675551,-!p7@HOXB6!0.64!3.41!HOXB6;;chr19:42636586..42636607,-!p1@POU2F2!0.63!10.33!POU2F2;;chr20:50721803..50721857,-!p2@ZFP64!0.63!5.52!ZFP64;;chr3:147127142..147127168,+!p1@ZIC1!0.63!3.29!ZIC1;;chr5:321810..321877,+!p1@AHRR!0.62!11.51!AHRR;;chr1:170632115..170632136,+!p9@PRRX1!0.62!3.17!PRRX1;;chr14:55493763..55493824,-!p1@WDHD1!0.61!27.95!WDHD1;;chr6:45390002..45390023,+!p6@RUNX2!0.61!5.87!RUNX2;;chr7:27192185..27192209,-!p1@HOXA3!0.61!3.05!HOXA3;;chr1:170633194..170633205,+!p18@PRRX1!0.61!3.05!PRRX1;;chr17:41623692..41623715,-!p1@ETV4!0.60!15.15!ETV4;;chr18:22932080..22932170,-!p1@ZNF521!0.60!14.91!ZNF521;;chr4:4861385..4861398,+!p1@MSX1!0.60!10.22!MSX1;;chr12:54394059..54394088,+!p3@HOXC9!0.60!2.94!HOXC9;;chr5:3595961..3595975,+!p3@IRX1!0.60!2.94!IRX1;;chr12:77459306..77459365,-!p1@E2F7!0.59!44.27!E2F7;;chr5:176738887..176738934,-!p1@MXD3!0.59!23.02!MXD3;;chr16:86600426..86600441,+!p1@FOXC2!0.59!8.10!FOXC2;;chr12:66218573..66218596,+!p7@HMGA2!0.59!4.70!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!0.59!3.29!HOXB2;;chr21:47063625..47063658,+!p1@PCBP3!0.58!14.56!PCBP3;;chr6:155635583..155635644,-!p1@TFB1M!0.57!43.45!TFB1M;;chr7:42276822..42276895,-!p2@GLI3!0.57!9.51!GLI3;;chr17:46655704..46655718,-!p2@HOXB4!0.57!4.46!HOXB4;;chr3:147111231..147111281,+!p3@ZIC1!0.57!2.70!ZIC1;;chr20:32274179..32274213,-!p1@E2F1!0.56!21.73!E2F1;;chr3:21792585..21792625,-!p2@ZNF385D!0.56!3.05!ZNF385D;;chr3:37217736..37217753,-!p2@LRRFIP2!0.55!13.04!LRRFIP2;;chr11:113930291..113930339,+!p2@ZBTB16!0.55!4.70!ZBTB16;;chr5:72744562..72744573,-!p3@FOXD1!0.55!3.41!FOXD1;;chr19:23299814..23299844,+!p1@ZNF730!0.55!3.29!ZNF730;;chr17:46671108..46671147,-!p1@HOXB5!0.55!2.58!HOXB5;;chr17:8027418..8027432,-!p1@HES7!0.55!2.58!HES7;;chr6:85473227..85473243,-!p5@TBX18!0.55!2.58!TBX18;;chr9:132427883..132427951,+!p2@PRRX2!0.55!2.58!PRRX2;;chr2:119604456..119604501,-!p2@EN1!0.55!2.58!EN1;;chr1:119530493..119530572,-!p1@TBX15!0.55!2.58!TBX15;;chr18:52989031..52989079,-!p2@TCF4!0.54!6.81!TCF4;;chr16:68573640..68573660,+!p3@ZFP90!0.54!3.52!ZFP90;;chr12:54447599..54447630,+!p3@HOXC4!0.54!3.17!HOXC4;;chr3:12329320..12329338,+!p4@PPARG!0.54!2.70!PPARG;;chr3:141121820..141121838,+!p9@ZBTB38!0.54!2.47!ZBTB38;;chr5:3595934..3595957,+!p2@IRX1!0.54!2.47!IRX1;;chr12:54380404..54380433,+!p3@HOXC10!0.54!2.47!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.54!2.47!HOXC8;;chr12:66218469..66218477,+!p16@HMGA2!0.54!2.47!HMGA2;;chr4:1873100..1873152,+!p1@WHSC1!0.53!23.13!WHSC1;;chr19:20188776..20188826,+!p1@ZNF90!0.53!7.75!ZNF90;;chr1:247171347..247171366,-!p2@ZNF695!0.53!5.05!ZNF695;;chr1:8926441..8926473,-!p10@ENO1!0.53!3.99!ENO1;;chr6:45390077..45390105,+!p9@RUNX2!0.53!3.29!RUNX2;;chr17:46688334..46688385,-!p1@HOXB7!0.52!3.64!HOXB7;;chr19:38720294..38720348,-!p1@DPF1!0.52!3.05!DPF1;;chr8:25902876..25902936,-!p1@EBF2!0.52!2.35!EBF2;;chr4:111558135..111558198,-!p2@PITX2!0.52!2.35!PITX2;;chr17:41622731..41622764,-!p5@ETV4!0.52!2.35!ETV4;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.51!5.75!SOHLH2;;chr6:45390300..45390335,+!p4@RUNX2!0.51!3.88!RUNX2;;chr7:14028488..14028516,-!p2@ETV1!0.51!2.58!ETV1;;chr10:119302645..119302712,+!p3@EMX2!0.51!2.23!EMX2;;chr12:54410948..54410992,+!p3@HOXC5!0.51!2.23!HOXC5;;chr1:170632310..170632321,+!p15@PRRX1!0.51!2.23!PRRX1;;chr4:109089095..109089144,-!p6@LEF1!0.51!2.23!LEF1;;chr19:23433144..23433204,-!p1@ZNF724P!0.50!12.33!ZNF724P;;chr8:67525473..67525518,-!p1@MYBL1!0.50!5.99!MYBL1;;chr14:61116168..61116180,-!p2@SIX1!0.50!2.58!SIX1;;chr10:114710244..114710257,+!p3@TCF7L2!0.49!6.93!TCF7L2;;chr5:158527104..158527135,-!p4@EBF1!0.49!2.11!EBF1;;chr7:27196267..27196311,-!p1@HOXA7!0.49!2.11!HOXA7;;chr3:147111198..147111225,+!p4@ZIC1!0.49!2.11!ZIC1;;chr15:57511589..57511608,+!p4@TCF12!0.49!2.11!TCF12;;chr1:170632647..170632659,+!p17@PRRX1!0.49!2.11!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.49!2.11!PRRX1;;chr15:42749722..42749739,-!p2@ZFP106!0.48!4.23!ZFP106;;chr17:41622834..41622883,-!p6@ETV4!0.48!2.58!ETV4;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002551;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002067;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Dermal%252c%2520donor4.CNhs12052.11450-119A1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11450-119A1
 |is_a=EFO:0002091;;FF:0000062
 |is_obsolete=
 |library_id=CNhs12052
+|library_id_phase_based=2:CNhs12052
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11450
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11450
 |name=Fibroblast - Dermal, donor4
 |namespace=FANTOM5
@@ Line 49: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12052,LSID838,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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FF:11450-119A1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:01, 4 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0