FF:10796-110I4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005010 | ||
|accession_numbers=CAGE;DRX007822;DRR008694;DRZ000119;DRZ001504 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005010 | ||
|accession_numbers=CAGE;DRX007822;DRR008694;DRZ000119;DRZ001504;DRZ011469;DRZ012854 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057142;DRR062901;DRZ007977 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.25!278.47!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.14!136.05!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.10!123.70!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.94!86.46!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.91!91.32!PPARG;;chr1:53925063..53925076,+!p2@DMRTB1!1.88!74.48!DMRTB1;;chr8:76319876..76319926,+!p1@HNF4G!1.77!57.27!HNF4G;;chr7:73038839..73038862,-!p1@MLXIPL!1.76!56.52!MLXIPL;;chr20:42984330..42984364,+!p2@HNF4A!1.63!41.55!HNF4A;;chr10:48355030..48355090,+!p1@ZNF488!1.57!46.22!ZNF488;;chr17:46682321..46682362,-!p1@HOXB6!1.56!35.37!HOXB6;;chr1:151804244..151804310,-!p1@RORC!1.50!30.50!RORC;;chr12:52445218..52445237,+!p1@NR4A1!1.47!345.65!NR4A1;;chr13:73633131..73633149,+!p1@KLF5!1.47!292.31!KLF5;;chr8:11561684..11561751,+!p1@GATA4!1.46!27.70!GATA4;;chr6:135502501..135502546,+!p1@MYB!1.43!31.07!MYB;;chr17:17726907..17726958,-!p2@SREBF1!1.41!148.22!SREBF1;;chr19:33793430..33793447,-!p1@CEBPA!1.41!102.37!CEBPA;;chr11:34642656..34642667,+!p2@EHF!1.40!24.33!EHF;;chr8:102504651..102504683,+!p1@GRHL2!1.39!23.58!GRHL2;;chr3:169381420..169381535,-!p1@MECOM!1.38!26.57!MECOM;;chr16:85932760..85932775,+!p1@IRF8!1.36!21.71!IRF8;;chr1:209979467..209979494,-!p1@IRF6!1.34!23.21!IRF6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.34!20.77!TFCP2L1;;chr17:46687959..46688007,-!p2@HOXB7!1.31!26.39!HOXB7;;chr11:65554528..65554546,+!p1@OVOL1!1.29!18.53!OVOL1;;chr18:19749541..19749557,+!p1@GATA6!1.28!56.33!GATA6;;chr13:28543285..28543314,-!p2@CDX2!1.28!18.15!CDX2;;chr10:135122906..135122921,+!p4@ZNF511!1.25!16.84!ZNF511;;chr6:10415484..10415508,-!p3@TFAP2A!1.22!15.53!TFAP2A;;chr11:61520075..61520136,+!p1@C11orf9!1.21!32.00!C11orf9;;chr18:19749517..19749531,+!p3@GATA6!1.21!26.76!GATA6;;chr7:96634850..96634874,+!p3@DLX6!1.20!14.97!DLX6;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.71!PITX1;;chr7:156803329..156803362,-!p1@MNX1!1.18!14.04!MNX1;;chrX:131623044..131623089,-!p1@MBNL3!1.17!56.70!MBNL3;;chr12:26277956..26277980,-!p1@BHLHE41!1.17!49.41!BHLHE41;;chr2:157189180..157189290,-!p1@NR4A2!1.16!70.36!NR4A2;;chr17:41623692..41623715,-!p1@ETV4!1.15!56.14!ETV4;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!22.08!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.15!13.29!EN2;;chr11:34645791..34645836,+!p3@EHF!1.15!13.29!EHF;;chr14:75745523..75745537,+!p1@FOS!1.14!1510.79!FOS;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.91!IKZF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.35!TFAP2A;;chr1:158985469..158985489,+!p7@IFI16!1.11!14.04!IFI16;;chr1:53925386..53925397,+!p4@DMRTB1!1.11!11.98!DMRTB1;;chr1:53925516..53925575,+!p1@DMRTB1!1.10!11.60!DMRTB1;;chr2:242556880..242556899,-!p5@THAP4!1.10!11.60!THAP4;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.60!PAX6;;chr17:46687935..46687950,-!p3@HOXB7!1.09!11.42!HOXB7;;chr7:27219833..27219845,-!p7@HOXA10!1.07!10.85!HOXA10;;chr20:18038521..18038571,-!p1@OVOL2!1.06!10.48!OVOL2;;chr2:239148671..239148686,-!p1@HES6!1.05!37.62!HES6;;chr11:65554563..65554576,+!p2@OVOL1!1.05!10.29!OVOL1;;chr1:3569072..3569093,+!p1@TP73!1.05!10.29!TP73;;chr20:22564895..22564910,-!p1@FOXA2!1.05!10.11!FOXA2;;chr3:119500941..119500961,+!p1@NR1I2!1.05!10.11!NR1I2;;chr12:100897130..100897149,+!p3@NR1H4!1.04!9.92!NR1H4;;chr14:38064429..38064486,-!p1@FOXA1!1.04!9.92!FOXA1;;chr3:12329358..12329393,+!p3@PPARG!1.03!24.33!PPARG;;chr3:12329397..12329433,+!p2@PPARG!1.03!22.46!PPARG;;chr19:1753498..1753519,+!p1@ONECUT3!1.03!9.73!ONECUT3;;chr6:10413188..10413249,-!p7@TFAP2A!1.03!9.73!TFAP2A;;chr20:43029862..43029900,+!p1@HNF4A!1.02!9.54!HNF4A;;chr17:46703212..46703238,-!p2@HOXB9!1.02!9.36!HOXB9;;chr19:45971246..45971265,+!p1@FOSB!1.00!169.18!FOSB;;chr1:2461692..2461710,-!p1@HES5!1.00!8.98!HES5;;chr7:27190547..27190591,-!p1@HOXA6!0.98!8.61!HOXA6;;chr5:134369879..134369898,-!p2@PITX1!0.97!8.23!PITX1;;chr19:53496768..53496799,-!p1@ZNF702P!0.95!12.35!ZNF702P;;chr6:36355513..36355578,-!p2@ETV7!0.95!10.11!ETV7;;chr13:28494130..28494168,+!p1@PDX1!0.95!7.86!PDX1;;chr7:138666053..138666146,-!p1@KIAA1549!0.94!32.94!KIAA1549;;chr22:42229210..42229229,+!p3@SREBF2!0.93!18.15!SREBF2;;chr5:50679228..50679288,+!p1@ISL1!0.93!7.49!ISL1;;chr8:76319850..76319870,+!p4@HNF4G!0.93!7.49!HNF4G;;chr1:6479968..6479986,-!p1@HES2!0.93!7.49!HES2;;chr21:38071430..38071456,+!p1@SIM2!0.93!7.49!SIM2;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.30!HOXA11;;chr8:41508327..41508355,-!p1@NKX6-3!0.92!7.30!NKX6-3;;chr1:61548225..61548299,+!p1@NFIA!0.91!96.56!NFIA;;chr7:73038867..73038878,-!p2@MLXIPL!0.90!6.92!MLXIPL;;chr12:121416340..121416360,+!p1@HNF1A!0.90!6.92!HNF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.89!18.34!NCOA7;;chr2:157199008..157199023,-!p3@NR4A2!0.88!14.22!NR4A2;;chr19:45260775..45260838,+!p5@BCL3!0.88!8.61!BCL3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.86!GATA3;;chr10:135122868..135122893,+!p3@ZNF511!0.88!6.55!ZNF511;;chr1:23857325..23857416,-!p2@E2F2!0.87!7.49!E2F2;;chr1:209979411..209979433,-!p2@IRF6!0.87!6.36!IRF6;;chr2:63277948..63277974,+!p1@OTX1!0.87!6.36!OTX1;;chr12:26277929..26277955,-!p3@BHLHE41!0.86!9.17!BHLHE41;;chr17:41623667..41623682,-!p8@ETV4!0.86!6.74!ETV4;;chr2:242556900..242556916,-!p6@THAP4!0.86!6.18!THAP4;;chr3:193853927..193853944,+!p1@HES1!0.84!207.73!HES1;;chr18:19749386..19749404,+!p2@GATA6!0.83!8.42!GATA6;;chr2:101436564..101436647,+!p1@NPAS2!0.82!122.95!NPAS2;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.71!BRCA1;;chr3:71632864..71632885,-!p4@FOXP1!0.81!19.65!FOXP1;;chr2:46524897..46524911,+!p2@EPAS1!0.81!16.28!EPAS1;;chr17:46655730..46655791,-!p1@HOXB4!0.81!14.41!HOXB4;;chr17:7197911..7197964,-!p1@YBX2!0.81!5.43!YBX2;;chr11:615570..615721,-!p2@IRF7!0.80!11.04!IRF7;;chr17:41623259..41623278,-!p7@ETV4!0.80!6.36!ETV4;;chr14:37131058..37131139,+!p1@PAX9!0.78!5.05!PAX9;;chr6:34524093..34524135,-!p1@SPDEF!0.78!5.05!SPDEF;;chr7:96635178..96635181,+!p1@DLX6!0.78!5.05!DLX6;;chr3:141087144..141087170,+!p11@ZBTB38!0.77!6.36!ZBTB38;;chr1:158985457..158985468,+!p12@IFI16!0.77!4.87!IFI16;;chr1:53925410..53925424,+!p3@DMRTB1!0.77!4.87!DMRTB1;;chr18:19749504..19749515,+!p5@GATA6!0.77!4.87!GATA6;;chr7:27224795..27224840,-!p2@HOXA11!0.77!4.87!HOXA11;;chr8:102504979..102505010,+!p2@GRHL2!0.77!4.87!GRHL2;;chr10:114710098..114710130,+!p2@TCF7L2!0.75!37.99!TCF7L2;;chr12:26277817..26277863,-!p2@BHLHE41!0.75!6.55!BHLHE41;;chr7:17338266..17338282,+!p1@AHR!0.74!53.90!AHR;;chr12:48298765..48298783,-!p2@VDR!0.74!10.11!VDR;;chr5:180288373..180288380,-!p5@ZFP62!0.74!4.49!ZFP62;;chr7:96634878..96634900,+!p2@DLX6!0.74!4.49!DLX6;;chr7:17338239..17338262,+!p2@AHR!0.73!36.12!AHR;;chr6:126240356..126240379,+!p7@NCOA7!0.73!5.43!NCOA7;;chr12:115121962..115121987,-!p1@TBX3!0.72!40.05!TBX3;;chr7:26191809..26191890,+!p1@NFE2L3!0.72!23.58!NFE2L3;;chr12:27485823..27485868,+!p2@ARNTL2!0.72!19.09!ARNTL2;;chr3:32023232..32023273,+!p1@ZNF860!0.72!6.36!ZNF860;;chr11:47279248..47279264,+!p3@NR1H3!0.72!4.87!NR1H3;;chr2:63277978..63277995,+!p2@OTX1!0.72!4.30!OTX1;;chr21:38071462..38071474,+!p3@SIM2!0.72!4.30!SIM2;;chr17:46806067..46806097,-!p1@HOXB13!0.72!4.30!HOXB13;;chr5:76383133..76383186,-!p2@ZBED3!0.71!9.17!ZBED3;;chr12:54378923..54378966,+!p1@HOXC10!0.71!4.12!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.71!4.12!HOXC10;;chr2:8822176..8822196,+!p1@ID2!0.70!644.32!ID2;;chr20:55204351..55204377,+!p1@TFAP2C!0.70!5.24!TFAP2C;;chr12:53774567..53774658,+!p2@SP1!0.69!21.52!SP1;;chr1:47903709..47903764,+!p1@BC169308!0.69!4.49!FOXD2;;chr1:10856639..10856662,-!p2@CASZ1!0.69!3.93!CASZ1;;chr16:67198633..67198671,+!p1@HSF4!0.69!3.93!HSF4;;chr18:55102628..55102646,+!p2@ONECUT2!0.69!3.93!ONECUT2;;chr7:137620650..137620677,-!p3@CREB3L2!0.69!3.93!CREB3L2;;chr2:113977697..113977733,-!p6@PAX8!0.69!3.93!PAX8;;chr12:26278008..26278024,-!p4@BHLHE41!0.68!4.68!BHLHE41;;chr18:55102598..55102623,+!p1@ONECUT2!0.68!3.74!ONECUT2;;chr1:10856694..10856715,-!p3@CASZ1!0.68!3.74!CASZ1;;chr7:137620684..137620711,-!p4@CREB3L2!0.68!3.74!CREB3L2;;chr7:27219849..27219867,-!p6@HOXA10!0.68!3.74!HOXA10;;chr7:27239703..27239715,-!p1@HOXA13!0.68!3.74!HOXA13;;chr13:41593425..41593480,-!p1@ELF1!0.67!26.76!ELF1;;chr12:48298785..48298828,-!p1@VDR!0.67!22.27!VDR;;chr8:71316428..71316459,-!p2@NCOA2!0.67!6.55!NCOA2;;chr19:17356189..17356221,-!p2@NR2F6!0.66!6.36!NR2F6;;chr1:158985493..158985535,+!p4@IFI16!0.66!5.80!IFI16;;chr1:10856665..10856683,-!p4@CASZ1!0.66!3.56!CASZ1;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.56!HOXA7;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.98!FOXM1;;chr5:92918894..92918912,+!p2@NR2F1!0.65!12.91!NR2F1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.65!8.23!ZNF395;;chr17:70117153..70117174,+!p1@SOX9!0.64!40.42!SOX9;;chr11:64764435..64764449,-!p1@BATF2!0.64!4.87!BATF2;;chr2:10091815..10091864,+!p1@GRHL1!0.64!4.68!GRHL1;;chr12:54380404..54380433,+!p3@HOXC10!0.64!3.37!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.64!3.37!HOXC5;;chr18:45663490..45663528,-!p2@ZBTB7C!0.64!3.37!ZBTB7C;;chr1:3569101..3569115,+!p2@TP73!0.64!3.37!TP73;;chr6:152128810..152128827,+!p2@ESR1!0.64!3.37!ESR1;;chr7:27239740..27239759,-!p2@HOXA13!0.64!3.37!HOXA13;;chr8:37553292..37553317,+!p1@ZNF703!0.63!91.89!ZNF703;;chr4:47916543..47916580,-!p2@NFXL1!0.63!12.54!NFXL1;;chr4:38665866..38665878,+!p4@KLF3!0.63!11.98!KLF3;;chr1:23857698..23857733,-!p1@E2F2!0.63!6.55!E2F2;;chr3:168864315..168864339,-!p2@MECOM!0.63!5.80!MECOM;;chr5:137804405..137804444,+!p3@EGR1!0.63!4.12!EGR1;;chr8:145669791..145669834,-!p1@TONSL!0.62!10.48!TONSL;;chr8:28243813..28243839,-!p4@ZNF395!0.62!6.18!ZNF395;;chr7:73038889..73038905,-!p3@MLXIPL!0.62!3.18!MLXIPL;;chr3:12329339..12329356,+!p5@PPARG!0.62!3.18!PPARG;;chr2:43453734..43453751,-!p1@ZFP36L2!0.61!399.36!ZFP36L2;;chr17:17740287..17740307,-!p1@SREBF1!0.61!97.69!SREBF1;;chr22:42229246..42229270,+!p2@SREBF2!0.61!46.41!SREBF2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.61!32.38!PPP1R13L;;chr8:28243934..28243993,-!p3@ZNF395!0.61!9.73!ZNF395;;chr11:19263160..19263176,-!p1@E2F8!0.61!3.74!E2F8;;chr20:42295745..42295765,+!p1@MYBL2!0.60!58.57!MYBL2;;chr4:38665883..38665922,+!p3@KLF3!0.60!13.10!KLF3;;chr1:40367530..40367597,-!p1@MYCL1!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| |expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.25!278.47!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.14!136.05!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.10!123.70!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.94!86.46!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.91!91.32!PPARG;;chr1:53925063..53925076,+!p2@DMRTB1!1.88!74.48!DMRTB1;;chr8:76319876..76319926,+!p1@HNF4G!1.77!57.27!HNF4G;;chr7:73038839..73038862,-!p1@MLXIPL!1.76!56.52!MLXIPL;;chr20:42984330..42984364,+!p2@HNF4A!1.63!41.55!HNF4A;;chr10:48355030..48355090,+!p1@ZNF488!1.57!46.22!ZNF488;;chr17:46682321..46682362,-!p1@HOXB6!1.56!35.37!HOXB6;;chr1:151804244..151804310,-!p1@RORC!1.50!30.50!RORC;;chr12:52445218..52445237,+!p1@NR4A1!1.47!345.65!NR4A1;;chr13:73633131..73633149,+!p1@KLF5!1.47!292.31!KLF5;;chr8:11561684..11561751,+!p1@GATA4!1.46!27.70!GATA4;;chr6:135502501..135502546,+!p1@MYB!1.43!31.07!MYB;;chr17:17726907..17726958,-!p2@SREBF1!1.41!148.22!SREBF1;;chr19:33793430..33793447,-!p1@CEBPA!1.41!102.37!CEBPA;;chr11:34642656..34642667,+!p2@EHF!1.40!24.33!EHF;;chr8:102504651..102504683,+!p1@GRHL2!1.39!23.58!GRHL2;;chr3:169381420..169381535,-!p1@MECOM!1.38!26.57!MECOM;;chr16:85932760..85932775,+!p1@IRF8!1.36!21.71!IRF8;;chr1:209979467..209979494,-!p1@IRF6!1.34!23.21!IRF6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.34!20.77!TFCP2L1;;chr17:46687959..46688007,-!p2@HOXB7!1.31!26.39!HOXB7;;chr11:65554528..65554546,+!p1@OVOL1!1.29!18.53!OVOL1;;chr18:19749541..19749557,+!p1@GATA6!1.28!56.33!GATA6;;chr13:28543285..28543314,-!p2@CDX2!1.28!18.15!CDX2;;chr10:135122906..135122921,+!p4@ZNF511!1.25!16.84!ZNF511;;chr6:10415484..10415508,-!p3@TFAP2A!1.22!15.53!TFAP2A;;chr11:61520075..61520136,+!p1@C11orf9!1.21!32.00!C11orf9;;chr18:19749517..19749531,+!p3@GATA6!1.21!26.76!GATA6;;chr7:96634850..96634874,+!p3@DLX6!1.20!14.97!DLX6;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.71!PITX1;;chr7:156803329..156803362,-!p1@MNX1!1.18!14.04!MNX1;;chrX:131623044..131623089,-!p1@MBNL3!1.17!56.70!MBNL3;;chr12:26277956..26277980,-!p1@BHLHE41!1.17!49.41!BHLHE41;;chr2:157189180..157189290,-!p1@NR4A2!1.16!70.36!NR4A2;;chr17:41623692..41623715,-!p1@ETV4!1.15!56.14!ETV4;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!22.08!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.15!13.29!EN2;;chr11:34645791..34645836,+!p3@EHF!1.15!13.29!EHF;;chr14:75745523..75745537,+!p1@FOS!1.14!1510.79!FOS;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.91!IKZF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.35!TFAP2A;;chr1:158985469..158985489,+!p7@IFI16!1.11!14.04!IFI16;;chr1:53925386..53925397,+!p4@DMRTB1!1.11!11.98!DMRTB1;;chr1:53925516..53925575,+!p1@DMRTB1!1.10!11.60!DMRTB1;;chr2:242556880..242556899,-!p5@THAP4!1.10!11.60!THAP4;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.60!PAX6;;chr17:46687935..46687950,-!p3@HOXB7!1.09!11.42!HOXB7;;chr7:27219833..27219845,-!p7@HOXA10!1.07!10.85!HOXA10;;chr20:18038521..18038571,-!p1@OVOL2!1.06!10.48!OVOL2;;chr2:239148671..239148686,-!p1@HES6!1.05!37.62!HES6;;chr11:65554563..65554576,+!p2@OVOL1!1.05!10.29!OVOL1;;chr1:3569072..3569093,+!p1@TP73!1.05!10.29!TP73;;chr20:22564895..22564910,-!p1@FOXA2!1.05!10.11!FOXA2;;chr3:119500941..119500961,+!p1@NR1I2!1.05!10.11!NR1I2;;chr12:100897130..100897149,+!p3@NR1H4!1.04!9.92!NR1H4;;chr14:38064429..38064486,-!p1@FOXA1!1.04!9.92!FOXA1;;chr3:12329358..12329393,+!p3@PPARG!1.03!24.33!PPARG;;chr3:12329397..12329433,+!p2@PPARG!1.03!22.46!PPARG;;chr19:1753498..1753519,+!p1@ONECUT3!1.03!9.73!ONECUT3;;chr6:10413188..10413249,-!p7@TFAP2A!1.03!9.73!TFAP2A;;chr20:43029862..43029900,+!p1@HNF4A!1.02!9.54!HNF4A;;chr17:46703212..46703238,-!p2@HOXB9!1.02!9.36!HOXB9;;chr19:45971246..45971265,+!p1@FOSB!1.00!169.18!FOSB;;chr1:2461692..2461710,-!p1@HES5!1.00!8.98!HES5;;chr7:27190547..27190591,-!p1@HOXA6!0.98!8.61!HOXA6;;chr5:134369879..134369898,-!p2@PITX1!0.97!8.23!PITX1;;chr19:53496768..53496799,-!p1@ZNF702P!0.95!12.35!ZNF702P;;chr6:36355513..36355578,-!p2@ETV7!0.95!10.11!ETV7;;chr13:28494130..28494168,+!p1@PDX1!0.95!7.86!PDX1;;chr7:138666053..138666146,-!p1@KIAA1549!0.94!32.94!KIAA1549;;chr22:42229210..42229229,+!p3@SREBF2!0.93!18.15!SREBF2;;chr5:50679228..50679288,+!p1@ISL1!0.93!7.49!ISL1;;chr8:76319850..76319870,+!p4@HNF4G!0.93!7.49!HNF4G;;chr1:6479968..6479986,-!p1@HES2!0.93!7.49!HES2;;chr21:38071430..38071456,+!p1@SIM2!0.93!7.49!SIM2;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.30!HOXA11;;chr8:41508327..41508355,-!p1@NKX6-3!0.92!7.30!NKX6-3;;chr1:61548225..61548299,+!p1@NFIA!0.91!96.56!NFIA;;chr7:73038867..73038878,-!p2@MLXIPL!0.90!6.92!MLXIPL;;chr12:121416340..121416360,+!p1@HNF1A!0.90!6.92!HNF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.89!18.34!NCOA7;;chr2:157199008..157199023,-!p3@NR4A2!0.88!14.22!NR4A2;;chr19:45260775..45260838,+!p5@BCL3!0.88!8.61!BCL3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.86!GATA3;;chr10:135122868..135122893,+!p3@ZNF511!0.88!6.55!ZNF511;;chr1:23857325..23857416,-!p2@E2F2!0.87!7.49!E2F2;;chr1:209979411..209979433,-!p2@IRF6!0.87!6.36!IRF6;;chr2:63277948..63277974,+!p1@OTX1!0.87!6.36!OTX1;;chr12:26277929..26277955,-!p3@BHLHE41!0.86!9.17!BHLHE41;;chr17:41623667..41623682,-!p8@ETV4!0.86!6.74!ETV4;;chr2:242556900..242556916,-!p6@THAP4!0.86!6.18!THAP4;;chr3:193853927..193853944,+!p1@HES1!0.84!207.73!HES1;;chr18:19749386..19749404,+!p2@GATA6!0.83!8.42!GATA6;;chr2:101436564..101436647,+!p1@NPAS2!0.82!122.95!NPAS2;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.71!BRCA1;;chr3:71632864..71632885,-!p4@FOXP1!0.81!19.65!FOXP1;;chr2:46524897..46524911,+!p2@EPAS1!0.81!16.28!EPAS1;;chr17:46655730..46655791,-!p1@HOXB4!0.81!14.41!HOXB4;;chr17:7197911..7197964,-!p1@YBX2!0.81!5.43!YBX2;;chr11:615570..615721,-!p2@IRF7!0.80!11.04!IRF7;;chr17:41623259..41623278,-!p7@ETV4!0.80!6.36!ETV4;;chr14:37131058..37131139,+!p1@PAX9!0.78!5.05!PAX9;;chr6:34524093..34524135,-!p1@SPDEF!0.78!5.05!SPDEF;;chr7:96635178..96635181,+!p1@DLX6!0.78!5.05!DLX6;;chr3:141087144..141087170,+!p11@ZBTB38!0.77!6.36!ZBTB38;;chr1:158985457..158985468,+!p12@IFI16!0.77!4.87!IFI16;;chr1:53925410..53925424,+!p3@DMRTB1!0.77!4.87!DMRTB1;;chr18:19749504..19749515,+!p5@GATA6!0.77!4.87!GATA6;;chr7:27224795..27224840,-!p2@HOXA11!0.77!4.87!HOXA11;;chr8:102504979..102505010,+!p2@GRHL2!0.77!4.87!GRHL2;;chr10:114710098..114710130,+!p2@TCF7L2!0.75!37.99!TCF7L2;;chr12:26277817..26277863,-!p2@BHLHE41!0.75!6.55!BHLHE41;;chr7:17338266..17338282,+!p1@AHR!0.74!53.90!AHR;;chr12:48298765..48298783,-!p2@VDR!0.74!10.11!VDR;;chr5:180288373..180288380,-!p5@ZFP62!0.74!4.49!ZFP62;;chr7:96634878..96634900,+!p2@DLX6!0.74!4.49!DLX6;;chr7:17338239..17338262,+!p2@AHR!0.73!36.12!AHR;;chr6:126240356..126240379,+!p7@NCOA7!0.73!5.43!NCOA7;;chr12:115121962..115121987,-!p1@TBX3!0.72!40.05!TBX3;;chr7:26191809..26191890,+!p1@NFE2L3!0.72!23.58!NFE2L3;;chr12:27485823..27485868,+!p2@ARNTL2!0.72!19.09!ARNTL2;;chr3:32023232..32023273,+!p1@ZNF860!0.72!6.36!ZNF860;;chr11:47279248..47279264,+!p3@NR1H3!0.72!4.87!NR1H3;;chr2:63277978..63277995,+!p2@OTX1!0.72!4.30!OTX1;;chr21:38071462..38071474,+!p3@SIM2!0.72!4.30!SIM2;;chr17:46806067..46806097,-!p1@HOXB13!0.72!4.30!HOXB13;;chr5:76383133..76383186,-!p2@ZBED3!0.71!9.17!ZBED3;;chr12:54378923..54378966,+!p1@HOXC10!0.71!4.12!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.71!4.12!HOXC10;;chr2:8822176..8822196,+!p1@ID2!0.70!644.32!ID2;;chr20:55204351..55204377,+!p1@TFAP2C!0.70!5.24!TFAP2C;;chr12:53774567..53774658,+!p2@SP1!0.69!21.52!SP1;;chr1:47903709..47903764,+!p1@BC169308!0.69!4.49!FOXD2;;chr1:10856639..10856662,-!p2@CASZ1!0.69!3.93!CASZ1;;chr16:67198633..67198671,+!p1@HSF4!0.69!3.93!HSF4;;chr18:55102628..55102646,+!p2@ONECUT2!0.69!3.93!ONECUT2;;chr7:137620650..137620677,-!p3@CREB3L2!0.69!3.93!CREB3L2;;chr2:113977697..113977733,-!p6@PAX8!0.69!3.93!PAX8;;chr12:26278008..26278024,-!p4@BHLHE41!0.68!4.68!BHLHE41;;chr18:55102598..55102623,+!p1@ONECUT2!0.68!3.74!ONECUT2;;chr1:10856694..10856715,-!p3@CASZ1!0.68!3.74!CASZ1;;chr7:137620684..137620711,-!p4@CREB3L2!0.68!3.74!CREB3L2;;chr7:27219849..27219867,-!p6@HOXA10!0.68!3.74!HOXA10;;chr7:27239703..27239715,-!p1@HOXA13!0.68!3.74!HOXA13;;chr13:41593425..41593480,-!p1@ELF1!0.67!26.76!ELF1;;chr12:48298785..48298828,-!p1@VDR!0.67!22.27!VDR;;chr8:71316428..71316459,-!p2@NCOA2!0.67!6.55!NCOA2;;chr19:17356189..17356221,-!p2@NR2F6!0.66!6.36!NR2F6;;chr1:158985493..158985535,+!p4@IFI16!0.66!5.80!IFI16;;chr1:10856665..10856683,-!p4@CASZ1!0.66!3.56!CASZ1;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.56!HOXA7;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.98!FOXM1;;chr5:92918894..92918912,+!p2@NR2F1!0.65!12.91!NR2F1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.65!8.23!ZNF395;;chr17:70117153..70117174,+!p1@SOX9!0.64!40.42!SOX9;;chr11:64764435..64764449,-!p1@BATF2!0.64!4.87!BATF2;;chr2:10091815..10091864,+!p1@GRHL1!0.64!4.68!GRHL1;;chr12:54380404..54380433,+!p3@HOXC10!0.64!3.37!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.64!3.37!HOXC5;;chr18:45663490..45663528,-!p2@ZBTB7C!0.64!3.37!ZBTB7C;;chr1:3569101..3569115,+!p2@TP73!0.64!3.37!TP73;;chr6:152128810..152128827,+!p2@ESR1!0.64!3.37!ESR1;;chr7:27239740..27239759,-!p2@HOXA13!0.64!3.37!HOXA13;;chr8:37553292..37553317,+!p1@ZNF703!0.63!91.89!ZNF703;;chr4:47916543..47916580,-!p2@NFXL1!0.63!12.54!NFXL1;;chr4:38665866..38665878,+!p4@KLF3!0.63!11.98!KLF3;;chr1:23857698..23857733,-!p1@E2F2!0.63!6.55!E2F2;;chr3:168864315..168864339,-!p2@MECOM!0.63!5.80!MECOM;;chr5:137804405..137804444,+!p3@EGR1!0.63!4.12!EGR1;;chr8:145669791..145669834,-!p1@TONSL!0.62!10.48!TONSL;;chr8:28243813..28243839,-!p4@ZNF395!0.62!6.18!ZNF395;;chr7:73038889..73038905,-!p3@MLXIPL!0.62!3.18!MLXIPL;;chr3:12329339..12329356,+!p5@PPARG!0.62!3.18!PPARG;;chr2:43453734..43453751,-!p1@ZFP36L2!0.61!399.36!ZFP36L2;;chr17:17740287..17740307,-!p1@SREBF1!0.61!97.69!SREBF1;;chr22:42229246..42229270,+!p2@SREBF2!0.61!46.41!SREBF2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.61!32.38!PPP1R13L;;chr8:28243934..28243993,-!p3@ZNF395!0.61!9.73!ZNF395;;chr11:19263160..19263176,-!p1@E2F8!0.61!3.74!E2F8;;chr20:42295745..42295765,+!p1@MYBL2!0.60!58.57!MYBL2;;chr4:38665883..38665922,+!p3@KLF3!0.60!13.10!KLF3;;chr1:40367530..40367597,-!p1@MYCL1!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| ||
Line 39: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10796-110I4 | |id=FF:10796-110I4 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100167 | |is_a=EFO:0002091;;FF:0000210;;FF:0100167 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11882 | |library_id=CNhs11882 | ||
|library_id_phase_based=2:CNhs11882 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10796 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10796 | |||
|name=adenocarcinoma cell line:IM95m | |name=adenocarcinoma cell line:IM95m | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 48: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11882,LSID830,release010,COMPLETED | |profile_hcage=CNhs11882,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 64: | Line 78: | ||
|rna_tube_id=110I4 | |rna_tube_id=110I4 | ||
|rna_weight_ug=210.46725 | |rna_weight_ug=210.46725 | ||
|rnaseq_library_id=RDhi10085 | |||
|sample_age=63 | |sample_age=63 | ||
|sample_category=cell lines | |sample_category=cell lines | ||
Line 87: | Line 102: | ||
|top_motifs=ZEB1:2.47400392585;HNF4A_NR2F1,2:2.34888053219;HNF1A:2.28806688633;SNAI1..3:2.15221118992;HOX{A6,A7,B6,B7}:1.81456950948;LMO2:1.70765597196;VSX1,2:1.69825512537;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0166973959;NFY{A,B,C}:1.01097929983;ONECUT1,2:0.95233817632;ZNF148:0.890880623365;NR5A1,2:0.890773032726;RBPJ:0.88509657476;MYB:0.879544141167;CDX1,2,4:0.828567971028;ELK1,4_GABP{A,B1}:0.714969945247;E2F1..5:0.706814588843;XCPE1{core}:0.680258980624;ADNP_IRX_SIX_ZHX:0.643682476522;MYOD1:0.627074506715;FOXN1:0.598392142358;ESRRA:0.595828245718;FOXQ1:0.521597234206;POU6F1:0.509875426317;SP1:0.508025416508;PPARG:0.475357814087;PBX1:0.470007792587;RXRA_VDR{dimer}:0.453607490853;GATA6:0.452399946074;DBP:0.431573222839;IRF7:0.430868277974;PAX6:0.414902104966;ATF4:0.40854450089;ZNF143:0.400791246603;MTF1:0.399123347561;NRF1:0.396314846856;bHLH_family:0.394586475345;NR6A1:0.38630547349;BREu{core}:0.380704134191;IKZF1:0.376301280606;POU2F1..3:0.360159218327;FOX{F1,F2,J1}:0.358645161958;ATF5_CREB3:0.345489336756;GFI1:0.34399629714;PAX5:0.315618890565;RORA:0.304317697082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.297296074826;POU5F1:0.275400209276;FOX{I1,J2}:0.264755327254;NANOG:0.260881020262;RFX2..5_RFXANK_RFXAP:0.210824137297;OCT4_SOX2{dimer}:0.178327222144;TP53:0.174727135125;YY1:0.158780888397;HOX{A5,B5}:0.134424737772;TFDP1:0.132664706873;PAX2:0.120732659604;LEF1_TCF7_TCF7L1,2:0.115272120223;STAT1,3:0.0996441506567;ARID5B:0.0919390917398;ZNF423:0.0756242438156;PDX1:0.0748898039494;CRX:0.0742520165319;TLX1..3_NFIC{dimer}:0.048335180033;CEBPA,B_DDIT3:0.0368356206797;FOXM1:0.028703450981;HAND1,2:0.0244033049919;HIF1A:0.0227345881974;PAX1,9:-0.0298609117195;TBX4,5:-0.0317643018167;EBF1:-0.0323661443313;MTE{core}:-0.0327059211509;SOX2:-0.0673999283196;TFAP2B:-0.0852880974456;TEAD1:-0.106440101699;ZFP161:-0.109072927324;FOS_FOS{B,L1}_JUN{B,D}:-0.113797212531;IKZF2:-0.119005260008;FOXD3:-0.119832126835;ELF1,2,4:-0.139204610443;IRF1,2:-0.145740039814;FOX{D1,D2}:-0.146386463824;FOSL2:-0.147804652059;NKX6-1,2:-0.16860300639;MED-1{core}:-0.181293809141;NFE2:-0.197872065003;TFCP2:-0.210290527282;SOX{8,9,10}:-0.214133296154;NKX2-3_NKX2-5:-0.222480794908;BACH2:-0.245671764286;HLF:-0.288134709845;DMAP1_NCOR{1,2}_SMARC:-0.301312002521;CUX2:-0.307034976288;MEF2{A,B,C,D}:-0.317244079001;NHLH1,2:-0.318398901144;NFKB1_REL_RELA:-0.324008142934;HOX{A4,D4}:-0.328745703537;PAX4:-0.336608893272;TFAP2{A,C}:-0.345967542133;HIC1:-0.347450455282;PRRX1,2:-0.35408689639;STAT2,4,6:-0.357790441106;PAX3,7:-0.360530218565;NR1H4:-0.360688354548;ATF6:-0.374610903836;ZBTB6:-0.396587161704;NFE2L2:-0.399971600095;ZBTB16:-0.410446634163;TAL1_TCF{3,4,12}:-0.42687322024;TBP:-0.427682770897;HSF1,2:-0.437413461767;EN1,2:-0.441143882505;ETS1,2:-0.464433387707;TEF:-0.479834693509;RFX1:-0.484503678319;LHX3,4:-0.51463810619;GTF2A1,2:-0.529222180585;CREB1:-0.530069056944;AR:-0.531633772207;GCM1,2:-0.542448080145;NKX3-2:-0.544175226122;REST:-0.546533217079;SPI1:-0.563865266223;PITX1..3:-0.569555096601;FOXP3:-0.581312216123;SPIB:-0.583030744558;FOXL1:-0.590694699325;STAT5{A,B}:-0.603621152942;FOXA2:-0.606222583958;SREBF1,2:-0.62891971017;BPTF:-0.636689558617;MYBL2:-0.644969028669;ESR1:-0.662583243085;SOX17:-0.670599345444;T:-0.685169481657;UFEwm:-0.723254205323;EP300:-0.731376261895;KLF4:-0.734704992462;PAX8:-0.759850963548;RUNX1..3:-0.761486951301;POU3F1..4:-0.763146601596;EVI1:-0.763576171908;SOX5:-0.76396257649;GTF2I:-0.784368065037;HES1:-0.803445048484;NFIX:-0.803613234775;CDC5L:-0.8110583153;NKX2-1,4:-0.811316811236;NKX3-1:-0.842703285189;JUN:-0.852115727529;FOXO1,3,4:-0.864847536143;SRF:-0.881980779753;EGR1..3:-0.882174967129;AHR_ARNT_ARNT2:-0.890429954777;MYFfamily:-0.947360761359;NFIL3:-0.950913304806;HMX1:-0.951090358925;ATF2:-0.987381800456;NANOG{mouse}:-0.991397485045;HOXA9_MEIS1:-1.00934183631;TFAP4:-1.02492465758;MAZ:-1.04291595914;GFI1B:-1.04661411924;RREB1:-1.09880238836;GATA4:-1.10350295132;ZNF384:-1.10843429932;TLX2:-1.12025374178;FOXP1:-1.12503552644;ZIC1..3:-1.14681204112;SPZ1:-1.17477835908;PRDM1:-1.17561355289;HBP1_HMGB_SSRP1_UBTF:-1.18338855083;GZF1:-1.21124058355;POU1F1:-1.24170030319;PATZ1:-1.26279002229;ALX4:-1.28745916716;TOPORS:-1.29961272996;MAFB:-1.32089559521;NKX2-2,8:-1.33167947431;HMGA1,2:-1.36316040604;NFE2L1:-1.3672423535;NR3C1:-1.40847061231;TGIF1:-1.41413733723;AIRE:-1.50399482167;GLI1..3:-1.59096549041;ZNF238:-1.69122023404;ALX1:-1.69753204325;NFATC1..3:-1.71617691505;MZF1:-1.72984156472;XBP1:-2.11050338869;SMAD1..7,9:-2.13569454047;RXR{A,B,G}:-2.41163328779 | |top_motifs=ZEB1:2.47400392585;HNF4A_NR2F1,2:2.34888053219;HNF1A:2.28806688633;SNAI1..3:2.15221118992;HOX{A6,A7,B6,B7}:1.81456950948;LMO2:1.70765597196;VSX1,2:1.69825512537;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0166973959;NFY{A,B,C}:1.01097929983;ONECUT1,2:0.95233817632;ZNF148:0.890880623365;NR5A1,2:0.890773032726;RBPJ:0.88509657476;MYB:0.879544141167;CDX1,2,4:0.828567971028;ELK1,4_GABP{A,B1}:0.714969945247;E2F1..5:0.706814588843;XCPE1{core}:0.680258980624;ADNP_IRX_SIX_ZHX:0.643682476522;MYOD1:0.627074506715;FOXN1:0.598392142358;ESRRA:0.595828245718;FOXQ1:0.521597234206;POU6F1:0.509875426317;SP1:0.508025416508;PPARG:0.475357814087;PBX1:0.470007792587;RXRA_VDR{dimer}:0.453607490853;GATA6:0.452399946074;DBP:0.431573222839;IRF7:0.430868277974;PAX6:0.414902104966;ATF4:0.40854450089;ZNF143:0.400791246603;MTF1:0.399123347561;NRF1:0.396314846856;bHLH_family:0.394586475345;NR6A1:0.38630547349;BREu{core}:0.380704134191;IKZF1:0.376301280606;POU2F1..3:0.360159218327;FOX{F1,F2,J1}:0.358645161958;ATF5_CREB3:0.345489336756;GFI1:0.34399629714;PAX5:0.315618890565;RORA:0.304317697082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.297296074826;POU5F1:0.275400209276;FOX{I1,J2}:0.264755327254;NANOG:0.260881020262;RFX2..5_RFXANK_RFXAP:0.210824137297;OCT4_SOX2{dimer}:0.178327222144;TP53:0.174727135125;YY1:0.158780888397;HOX{A5,B5}:0.134424737772;TFDP1:0.132664706873;PAX2:0.120732659604;LEF1_TCF7_TCF7L1,2:0.115272120223;STAT1,3:0.0996441506567;ARID5B:0.0919390917398;ZNF423:0.0756242438156;PDX1:0.0748898039494;CRX:0.0742520165319;TLX1..3_NFIC{dimer}:0.048335180033;CEBPA,B_DDIT3:0.0368356206797;FOXM1:0.028703450981;HAND1,2:0.0244033049919;HIF1A:0.0227345881974;PAX1,9:-0.0298609117195;TBX4,5:-0.0317643018167;EBF1:-0.0323661443313;MTE{core}:-0.0327059211509;SOX2:-0.0673999283196;TFAP2B:-0.0852880974456;TEAD1:-0.106440101699;ZFP161:-0.109072927324;FOS_FOS{B,L1}_JUN{B,D}:-0.113797212531;IKZF2:-0.119005260008;FOXD3:-0.119832126835;ELF1,2,4:-0.139204610443;IRF1,2:-0.145740039814;FOX{D1,D2}:-0.146386463824;FOSL2:-0.147804652059;NKX6-1,2:-0.16860300639;MED-1{core}:-0.181293809141;NFE2:-0.197872065003;TFCP2:-0.210290527282;SOX{8,9,10}:-0.214133296154;NKX2-3_NKX2-5:-0.222480794908;BACH2:-0.245671764286;HLF:-0.288134709845;DMAP1_NCOR{1,2}_SMARC:-0.301312002521;CUX2:-0.307034976288;MEF2{A,B,C,D}:-0.317244079001;NHLH1,2:-0.318398901144;NFKB1_REL_RELA:-0.324008142934;HOX{A4,D4}:-0.328745703537;PAX4:-0.336608893272;TFAP2{A,C}:-0.345967542133;HIC1:-0.347450455282;PRRX1,2:-0.35408689639;STAT2,4,6:-0.357790441106;PAX3,7:-0.360530218565;NR1H4:-0.360688354548;ATF6:-0.374610903836;ZBTB6:-0.396587161704;NFE2L2:-0.399971600095;ZBTB16:-0.410446634163;TAL1_TCF{3,4,12}:-0.42687322024;TBP:-0.427682770897;HSF1,2:-0.437413461767;EN1,2:-0.441143882505;ETS1,2:-0.464433387707;TEF:-0.479834693509;RFX1:-0.484503678319;LHX3,4:-0.51463810619;GTF2A1,2:-0.529222180585;CREB1:-0.530069056944;AR:-0.531633772207;GCM1,2:-0.542448080145;NKX3-2:-0.544175226122;REST:-0.546533217079;SPI1:-0.563865266223;PITX1..3:-0.569555096601;FOXP3:-0.581312216123;SPIB:-0.583030744558;FOXL1:-0.590694699325;STAT5{A,B}:-0.603621152942;FOXA2:-0.606222583958;SREBF1,2:-0.62891971017;BPTF:-0.636689558617;MYBL2:-0.644969028669;ESR1:-0.662583243085;SOX17:-0.670599345444;T:-0.685169481657;UFEwm:-0.723254205323;EP300:-0.731376261895;KLF4:-0.734704992462;PAX8:-0.759850963548;RUNX1..3:-0.761486951301;POU3F1..4:-0.763146601596;EVI1:-0.763576171908;SOX5:-0.76396257649;GTF2I:-0.784368065037;HES1:-0.803445048484;NFIX:-0.803613234775;CDC5L:-0.8110583153;NKX2-1,4:-0.811316811236;NKX3-1:-0.842703285189;JUN:-0.852115727529;FOXO1,3,4:-0.864847536143;SRF:-0.881980779753;EGR1..3:-0.882174967129;AHR_ARNT_ARNT2:-0.890429954777;MYFfamily:-0.947360761359;NFIL3:-0.950913304806;HMX1:-0.951090358925;ATF2:-0.987381800456;NANOG{mouse}:-0.991397485045;HOXA9_MEIS1:-1.00934183631;TFAP4:-1.02492465758;MAZ:-1.04291595914;GFI1B:-1.04661411924;RREB1:-1.09880238836;GATA4:-1.10350295132;ZNF384:-1.10843429932;TLX2:-1.12025374178;FOXP1:-1.12503552644;ZIC1..3:-1.14681204112;SPZ1:-1.17477835908;PRDM1:-1.17561355289;HBP1_HMGB_SSRP1_UBTF:-1.18338855083;GZF1:-1.21124058355;POU1F1:-1.24170030319;PATZ1:-1.26279002229;ALX4:-1.28745916716;TOPORS:-1.29961272996;MAFB:-1.32089559521;NKX2-2,8:-1.33167947431;HMGA1,2:-1.36316040604;NFE2L1:-1.3672423535;NR3C1:-1.40847061231;TGIF1:-1.41413733723;AIRE:-1.50399482167;GLI1..3:-1.59096549041;ZNF238:-1.69122023404;ALX1:-1.69753204325;NFATC1..3:-1.71617691505;MZF1:-1.72984156472;XBP1:-2.11050338869;SMAD1..7,9:-2.13569454047;RXR{A,B,G}:-2.41163328779 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10796-110I4;search_select_hide=table117:FF:10796-110I4 | |||
}} | }} |
Latest revision as of 15:05, 3 June 2020
Name: | adenocarcinoma cell line:IM95m |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11882 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11882
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11882
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.86 |
10 | 10 | 0.95 |
100 | 100 | 0.896 |
101 | 101 | 0.376 |
102 | 102 | 0.909 |
103 | 103 | 0.67 |
104 | 104 | 0.717 |
105 | 105 | 0.279 |
106 | 106 | 0.0726 |
107 | 107 | 0.395 |
108 | 108 | 0.505 |
109 | 109 | 0.104 |
11 | 11 | 0.722 |
110 | 110 | 0.735 |
111 | 111 | 0.9 |
112 | 112 | 0.467 |
113 | 113 | 0.00944 |
114 | 114 | 0.746 |
115 | 115 | 0.624 |
116 | 116 | 0.105 |
117 | 117 | 0.65 |
118 | 118 | 0.297 |
119 | 119 | 0.55 |
12 | 12 | 0.877 |
120 | 120 | 0.961 |
121 | 121 | 0.732 |
122 | 122 | 0.274 |
123 | 123 | 0.0848 |
124 | 124 | 0.142 |
125 | 125 | 0.159 |
126 | 126 | 0.126 |
127 | 127 | 0.253 |
128 | 128 | 0.0565 |
129 | 129 | 0.505 |
13 | 13 | 0.0138 |
130 | 130 | 0.241 |
131 | 131 | 0.00541 |
132 | 132 | 0.0574 |
133 | 133 | 0.106 |
134 | 134 | 0.0284 |
135 | 135 | 0.0954 |
136 | 136 | 0.00627 |
137 | 137 | 0.494 |
138 | 138 | 0.35 |
139 | 139 | 0.313 |
14 | 14 | 0.888 |
140 | 140 | 0.829 |
141 | 141 | 0.659 |
142 | 142 | 0.967 |
143 | 143 | 0.0829 |
144 | 144 | 0.154 |
145 | 145 | 0.179 |
146 | 146 | 0.539 |
147 | 147 | 0.306 |
148 | 148 | 0.798 |
149 | 149 | 0.47 |
15 | 15 | 0.89 |
150 | 150 | 0.678 |
151 | 151 | 0.891 |
152 | 152 | 0.848 |
153 | 153 | 0.533 |
154 | 154 | 0.79 |
155 | 155 | 0.12 |
156 | 156 | 0.423 |
157 | 157 | 0.532 |
158 | 158 | 0.934 |
159 | 159 | 0.881 |
16 | 16 | 0.824 |
160 | 160 | 0.661 |
161 | 161 | 0.516 |
162 | 162 | 0.351 |
163 | 163 | 0.66 |
164 | 164 | 0.371 |
165 | 165 | 0.655 |
166 | 166 | 0.564 |
167 | 167 | 0.662 |
168 | 168 | 0.538 |
169 | 169 | 0.44 |
17 | 17 | 0.679 |
18 | 18 | 0.0672 |
19 | 19 | 0.303 |
2 | 2 | 0.823 |
20 | 20 | 0.553 |
21 | 21 | 0.68 |
22 | 22 | 0.673 |
23 | 23 | 0.0637 |
24 | 24 | 0.52 |
25 | 25 | 0.843 |
26 | 26 | 0.0147 |
27 | 27 | 0.645 |
28 | 28 | 0.527 |
29 | 29 | 0.413 |
3 | 3 | 0.535 |
30 | 30 | 0.277 |
31 | 31 | 0.841 |
32 | 32 | 0.0869 |
33 | 33 | 0.356 |
34 | 34 | 0.426 |
35 | 35 | 0.0198 |
36 | 36 | 0.436 |
37 | 37 | 0.346 |
38 | 38 | 0.264 |
39 | 39 | 0.836 |
4 | 4 | 0.792 |
40 | 40 | 0.164 |
41 | 41 | 0.115 |
42 | 42 | 0.988 |
43 | 43 | 0.497 |
44 | 44 | 0.505 |
45 | 45 | 0.852 |
46 | 46 | 0.456 |
47 | 47 | 0.981 |
48 | 48 | 0.993 |
49 | 49 | 0.257 |
5 | 5 | 0.547 |
50 | 50 | 0.705 |
51 | 51 | 0.851 |
52 | 52 | 0.485 |
53 | 53 | 0.273 |
54 | 54 | 0.837 |
55 | 55 | 0.552 |
56 | 56 | 0.77 |
57 | 57 | 0.448 |
58 | 58 | 0.511 |
59 | 59 | 0.286 |
6 | 6 | 0.279 |
60 | 60 | 0.92 |
61 | 61 | 0.135 |
62 | 62 | 0.866 |
63 | 63 | 0.841 |
64 | 64 | 0.653 |
65 | 65 | 0.528 |
66 | 66 | 0.00995 |
67 | 67 | 0.658 |
68 | 68 | 0.0394 |
69 | 69 | 0.73 |
7 | 7 | 0.124 |
70 | 70 | 0.141 |
71 | 71 | 0.632 |
72 | 72 | 0.91 |
73 | 73 | 0.246 |
74 | 74 | 0.113 |
75 | 75 | 0.894 |
76 | 76 | 0.286 |
77 | 77 | 0.764 |
78 | 78 | 0.0264 |
79 | 79 | 0.0124 |
8 | 8 | 0.57 |
80 | 80 | 0.369 |
81 | 81 | 0.181 |
82 | 82 | 3.79037e-5 |
83 | 83 | 0.719 |
84 | 84 | 0.199 |
85 | 85 | 0.202 |
86 | 86 | 0.873 |
87 | 87 | 0.0181 |
88 | 88 | 0.354 |
89 | 89 | 0.73 |
9 | 9 | 0.303 |
90 | 90 | 0.241 |
91 | 91 | 0.0129 |
92 | 92 | 0.154 |
93 | 93 | 0.756 |
94 | 94 | 0.0535 |
95 | 95 | 0.0336 |
96 | 96 | 0.343 |
97 | 97 | 0.805 |
98 | 98 | 0.467 |
99 | 99 | 0.659 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11882
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100167 adenocarcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA