FFCP PHASE1:Mm9::chr12:88225416..88225425,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:88225416..88225425,-
|short_description=p6@6430527G18Rik
|description=CAGE_peak_6_at_6430527G18Rik_5end
|association_with_transcript=338bp_to_ENSMUST00000...") |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=238330 | |EntrezGene=238330 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q8K3X4 | |UniProt=Q8K3X4 | ||
|association_with_transcript=338bp_to_ENSMUST00000038422,NM_145836,uc007oia.2_5end | |||
|cluster_id=chr12:88225416..88225425,- | |||
|description=CAGE_peak_6_at_6430527G18Rik_5end | |||
|id=chr12:88225416..88225425,- | |||
|ontology_enrichment_celltype=CL:0000055!1.48e-16!50;CL:0002319!1.78e-15!43;CL:0000221!3.01e-15!44;CL:0000133!3.01e-15!44;CL:0000393!4.48e-15!39;CL:0000211!4.48e-15!39;CL:0000540!3.47e-13!33;CL:0000047!3.47e-13!33;CL:0000031!3.47e-13!33;CL:0000404!3.47e-13!33;CL:0002321!1.23e-10!70;CL:0000220!1.23e-10!70;CL:0000117!2.44e-09!23;CL:0000337!2.44e-09!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,4.20e-26,43;CL:0000540,1.72e-25,33;CL:0000047,1.72e-25,33;CL:0000031,1.72e-25,33;CL:0000404,1.72e-25,33;CL:0000221,2.13e-25,44;CL:0000133,2.13e-25,44;CL:0000393,3.35e-23,39;CL:0000211,3.35e-23,39;CL:0000117,4.59e-17,23;CL:0000337,4.59e-17,23;CL:0002321,1.40e-15,70;CL:0000723,1.97e-13,91;CL:0000048,1.97e-13,91;CL:0000034,2.91e-12,97;CL:0000107,1.77e-10,9;CL:0002609,1.25e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.42e-13!75;UBERON:0001016!4.42e-13!75;UBERON:0001017!5.38e-13!73;UBERON:0005743!5.38e-13!73;UBERON:0004121!1.14e-10!102;UBERON:0000924!1.14e-10!102;UBERON:0006601!1.14e-10!102;UBERON:0002020!1.60e-07!34;UBERON:0002346!3.71e-07!71;UBERON:0003075!3.71e-07!71;UBERON:0007284!3.71e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.07e-20,73;UBERON:0001016,4.31e-19,75;UBERON:0004121,6.83e-14,95;UBERON:0000924,6.83e-14,95;UBERON:0006601,6.83e-14,95;UBERON:0002410,1.77e-10,9;UBERON:0000073,3.01e-09,54;UBERON:0000013,7.75e-09,3;UBERON:0000010,1.89e-08,11;UBERON:0002020,1.46e-07,34;UBERON:0001049,2.99e-07,52;UBERON:0005068,2.99e-07,52;UBERON:0006241,2.99e-07,52;UBERON:0007135,2.99e-07,52 | |||
|phase1_expression=0.160148847104794,0,0.454999239389536,0,0,0,0.467225281191051,0.387369970324729,0.563154888606667,0,0.34243593645101,0.159544317990673,0.513602189793617,0.437102012094987,0,0,0,0.630924330716475,0.411343300817216,0,0.595303031057488,0.0992909512008853,0,0,0,0,0,0,0,0.252030129759931,0,0.635030673459631,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.503587271902309,0.405507724878058,0.734187008646726,2.34717403304412,0.65407546914134,0.659058548203415,0.972149495371417,0.55994568650145,0,0.838913030288682,1.45072428402269,1.68046899571232,0.771778308107841,0.85960031981627,1.03134418455488,2.22548106945558,1.05798195854407,0.633831403506179,0.677689064138264,0,0.449949858640699,2.96659908770092,0,1.49800055259202,1.92109152660777,0.725827286159344,2.70011876663381,1.05162480675691,1.14260393761521,0.662605622854841,1.46988959057945,2.30029130443767,0.919218786610021,1.10115880999389,0.510749352340751,1.22885226604995,1.97829431595291,1.46380229763855,0,1.11673199600552,0,0.45839474333043,0.883885756421003,1.56608848879013,0.745597783301202,0.302904773332736,0.453429360640713,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,0.842666520790511,0.340860645156116,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0.760079596425296,0.505524445014783,0.11418387971906,0.258937883647172,0.445326417194474,0.173485326766136,1.21786191324856,0.461230994512117,0.452167921657868,0.470354828542819,0.251333182659351,0,0.144599356919912,0.884610551949874,0.323533699894818,0,0,0,0,0.41889341362691,0.255457055208591,0.359445373517761,0,0,0.149790639404823,0.457500602818626,0.628271760564322,0,0.255715457330331,0.20778804455956,0.162241263067758,0.305518091550949,0.497627882440372,0.758168275301024,0.841767423545896,0.260240885925407,0.229902104433473,0.180062129805349,0,0.0680364991513279,0.12811372028485,0.468508622798644,0.258703370739016,0.862271971731369,0.189106080167819,0.703804496655795,0.219195732427575,0.556094498451196,0.348252166522167,0.205782136407943,0,0,0,0,0.621377317606506,0.469052119962192,0.36012412292203,0.473489471170421,0,0.308534225774757,0.232533944750408,0.268273401399619,0.116765342367169,0.493679549740441,0.656669856316381,0.0810688095458557,0.584799949701329,0.219550115291051,0.134206418760372,0.630869845692382,0.411618449517138,0,0,0.639864751605702,0,0.38660238396628,0,0,0.190225626112559,0,0,0,0.397912944082302,0,0,0,0.199141273254367,0.948339504765408,0.114248512609729,0,0.814605311381257,0.387904974335251,0.280543279561274,0.316182685621286,0.147610147979602,0,0.493588655687202,0,0.166845105716094,0.196558995113203,0,0,0,0,0.575392274901621,0.486405680325106,0,0,0.372140947668503,0,0.252578877947112,0.179397413521912,0,0.923765950833023,0.37898282354097,0.488894929326078,0.339490171550376,0.469380496577004,0.502518772325447,0.476087281772027,0.390267295715598,0.315270288212382,0.221464689648775,0,0.327726629431476,0.172684981865896,0.578596234326046,0,0,0,0.827810238914197,0.321101179975584,0.117211686592203,0.163934945376675,0.757412781613119,0.94652465824877,1.56175497718655,0.861693590931196,1.19484398976276,1.78238939265915,0.283076530788832,2.42886421004937,1.46127928955656,1.18586333383957,0.963963949265421,0.425820255624806,0.178065603667255,0.81443479676788,0.494910368917606,1.32745138339963,0.485561272309963,0.302323556964751,0,0.295301892880773,0,0,0,0.356497378384721,0,0,1.03135543248187,0,0.36012218806262,0.129358683782755,0.214337035031592,0.177340233642274,1.07021290561242,0.329098041204242,1.2178597964584,0,0.42366414172764,0,0.16488625294148,0.322928853391811,0.241251699712623,0.119372344003136,0,0,0,0,0.619160603889667,0.555583582109135,0,0,0.228778173206523,0.339956859987711,0.419854356970974,0.138199973804424,0,0.949007980743406,0,0.216010681643603,0,0,0.134864346384821,0.330613822901344,0,0.388844919875379,0,0,0.448549638131936,0,0,0.774958940866387,0.675824501963113,0.704143431874524,0.2604087696879,0.419437377702843,0,0,0,0,0.102710957164827,0,0,0.198681354781265,0.120195449519969,0.443068581523732,0.100966449948148,0,0,0,0.288635524920988,0,0.226730383615211,0,0.538283139656854,0,0.965947970160952,0.93841237725591,0.36630324853453,0.428736758158132,0,0.564751842617067,0.920650473014354,0,0.515559547031063,0.685082519770642,1.5107877947794,0,1.35096360967266,0,0.51776031175182,0.103787347584177,1.59609949360412,0.170733605754134,0,0.838452650511929,0.183843508450014,0,0.412070114477788,0.320919209591815,0,0.760437899670719,0.188626341386076,0.187283014939765,0.128050304809739,0.229741875822453,0,0.463537303779422,0.192909220463705,0.412085900803307,0.441596760403192,0.342869252385415,0,0.476872379894642,0,0,0.0846146078916765,0,0,0.543216455383447,0,0.118635018124174,0.29551344712669,0,0.154936841185966,0.385813221962283,0.749431733813838,0.233931608445408,0.644613162144895,0.765153328275374,0.661774257358546,0 | |phase1_expression=0.160148847104794,0,0.454999239389536,0,0,0,0.467225281191051,0.387369970324729,0.563154888606667,0,0.34243593645101,0.159544317990673,0.513602189793617,0.437102012094987,0,0,0,0.630924330716475,0.411343300817216,0,0.595303031057488,0.0992909512008853,0,0,0,0,0,0,0,0.252030129759931,0,0.635030673459631,0,0,0.288851619751275,0,0,0,0,0,0,0,0,0.503587271902309,0.405507724878058,0.734187008646726,2.34717403304412,0.65407546914134,0.659058548203415,0.972149495371417,0.55994568650145,0,0.838913030288682,1.45072428402269,1.68046899571232,0.771778308107841,0.85960031981627,1.03134418455488,2.22548106945558,1.05798195854407,0.633831403506179,0.677689064138264,0,0.449949858640699,2.96659908770092,0,1.49800055259202,1.92109152660777,0.725827286159344,2.70011876663381,1.05162480675691,1.14260393761521,0.662605622854841,1.46988959057945,2.30029130443767,0.919218786610021,1.10115880999389,0.510749352340751,1.22885226604995,1.97829431595291,1.46380229763855,0,1.11673199600552,0,0.45839474333043,0.883885756421003,1.56608848879013,0.745597783301202,0.302904773332736,0.453429360640713,0.289864488701678,0,0,0.539703191637817,0,0.448026887097336,0.842666520790511,0.340860645156116,0.259786004602869,0,0.281686839553361,0,0,0,0.432982082022428,0.760079596425296,0.505524445014783,0.11418387971906,0.258937883647172,0.445326417194474,0.173485326766136,1.21786191324856,0.461230994512117,0.452167921657868,0.470354828542819,0.251333182659351,0,0.144599356919912,0.884610551949874,0.323533699894818,0,0,0,0,0.41889341362691,0.255457055208591,0.359445373517761,0,0,0.149790639404823,0.457500602818626,0.628271760564322,0,0.255715457330331,0.20778804455956,0.162241263067758,0.305518091550949,0.497627882440372,0.758168275301024,0.841767423545896,0.260240885925407,0.229902104433473,0.180062129805349,0,0.0680364991513279,0.12811372028485,0.468508622798644,0.258703370739016,0.862271971731369,0.189106080167819,0.703804496655795,0.219195732427575,0.556094498451196,0.348252166522167,0.205782136407943,0,0,0,0,0.621377317606506,0.469052119962192,0.36012412292203,0.473489471170421,0,0.308534225774757,0.232533944750408,0.268273401399619,0.116765342367169,0.493679549740441,0.656669856316381,0.0810688095458557,0.584799949701329,0.219550115291051,0.134206418760372,0.630869845692382,0.411618449517138,0,0,0.639864751605702,0,0.38660238396628,0,0,0.190225626112559,0,0,0,0.397912944082302,0,0,0,0.199141273254367,0.948339504765408,0.114248512609729,0,0.814605311381257,0.387904974335251,0.280543279561274,0.316182685621286,0.147610147979602,0,0.493588655687202,0,0.166845105716094,0.196558995113203,0,0,0,0,0.575392274901621,0.486405680325106,0,0,0.372140947668503,0,0.252578877947112,0.179397413521912,0,0.923765950833023,0.37898282354097,0.488894929326078,0.339490171550376,0.469380496577004,0.502518772325447,0.476087281772027,0.390267295715598,0.315270288212382,0.221464689648775,0,0.327726629431476,0.172684981865896,0.578596234326046,0,0,0,0.827810238914197,0.321101179975584,0.117211686592203,0.163934945376675,0.757412781613119,0.94652465824877,1.56175497718655,0.861693590931196,1.19484398976276,1.78238939265915,0.283076530788832,2.42886421004937,1.46127928955656,1.18586333383957,0.963963949265421,0.425820255624806,0.178065603667255,0.81443479676788,0.494910368917606,1.32745138339963,0.485561272309963,0.302323556964751,0,0.295301892880773,0,0,0,0.356497378384721,0,0,1.03135543248187,0,0.36012218806262,0.129358683782755,0.214337035031592,0.177340233642274,1.07021290561242,0.329098041204242,1.2178597964584,0,0.42366414172764,0,0.16488625294148,0.322928853391811,0.241251699712623,0.119372344003136,0,0,0,0,0.619160603889667,0.555583582109135,0,0,0.228778173206523,0.339956859987711,0.419854356970974,0.138199973804424,0,0.949007980743406,0,0.216010681643603,0,0,0.134864346384821,0.330613822901344,0,0.388844919875379,0,0,0.448549638131936,0,0,0.774958940866387,0.675824501963113,0.704143431874524,0.2604087696879,0.419437377702843,0,0,0,0,0.102710957164827,0,0,0.198681354781265,0.120195449519969,0.443068581523732,0.100966449948148,0,0,0,0.288635524920988,0,0.226730383615211,0,0.538283139656854,0,0.965947970160952,0.93841237725591,0.36630324853453,0.428736758158132,0,0.564751842617067,0.920650473014354,0,0.515559547031063,0.685082519770642,1.5107877947794,0,1.35096360967266,0,0.51776031175182,0.103787347584177,1.59609949360412,0.170733605754134,0,0.838452650511929,0.183843508450014,0,0.412070114477788,0.320919209591815,0,0.760437899670719,0.188626341386076,0.187283014939765,0.128050304809739,0.229741875822453,0,0.463537303779422,0.192909220463705,0.412085900803307,0.441596760403192,0.342869252385415,0,0.476872379894642,0,0,0.0846146078916765,0,0,0.543216455383447,0,0.118635018124174,0.29551344712669,0,0.154936841185966,0.385813221962283,0.749431733813838,0.233931608445408,0.644613162144895,0.765153328275374,0.661774257358546,0 | ||
|short_description=p6@6430527G18Rik | |||
}} | }} |
Latest revision as of 23:19, 26 September 2015
Short description: | p6@6430527G18Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_6430527G18Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 338bp_to_ENSMUST00000038422, NM_145836, uc007oia.2_5end |
EntrezGene: | 6430527G18Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 4.20e-26 | 43 |
neuron | 1.72e-25 | 33 |
neuronal stem cell | 1.72e-25 | 33 |
neuroblast | 1.72e-25 | 33 |
electrically signaling cell | 1.72e-25 | 33 |
ectodermal cell | 2.13e-25 | 44 |
neurectodermal cell | 2.13e-25 | 44 |
electrically responsive cell | 3.35e-23 | 39 |
electrically active cell | 3.35e-23 | 39 |
CNS neuron (sensu Vertebrata) | 4.59e-17 | 23 |
neuroblast (sensu Vertebrata) | 4.59e-17 | 23 |
embryonic cell | 1.40e-15 | 70 |
somatic stem cell | 1.97e-13 | 91 |
multi fate stem cell | 1.97e-13 | 91 |
stem cell | 2.91e-12 | 97 |
autonomic neuron | 1.77e-10 | 9 |
neuron of cerebral cortex | 1.25e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.07e-20 | 73 |
nervous system | 4.31e-19 | 75 |
ectoderm-derived structure | 6.83e-14 | 95 |
ectoderm | 6.83e-14 | 95 |
presumptive ectoderm | 6.83e-14 | 95 |
autonomic nervous system | 1.77e-10 | 9 |
regional part of nervous system | 3.01e-09 | 54 |
sympathetic nervous system | 7.75e-09 | 3 |
peripheral nervous system | 1.89e-08 | 11 |
gray matter | 1.46e-07 | 34 |
neural tube | 2.99e-07 | 52 |
neural rod | 2.99e-07 | 52 |
future spinal cord | 2.99e-07 | 52 |
neural keel | 2.99e-07 | 52 |