FF:10022-101D4: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	prostate, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10628
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	prostate
dev stage	73,79,93 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -13
catalog number	Cat:AM6000 Lot:0910061 -13
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005501

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10628		CAGE		DRX008713		DRR009585

Accession ID Hg19

Library id		BAM		CTSS
CNhs10628		DRZ001010		DRZ002395

Accession ID Hg38

Library id		BAM		CTSS
CNhs10628		DRZ012360		DRZ013745

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10021		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.115
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.312
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0328
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.305
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.119
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0424
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.191
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0328
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0018
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.168
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0.0328
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.119
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0305
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.222
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.044
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.19
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0328
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0633
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0.0918
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0328
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.527
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0328
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0.685
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.261
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.19
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.131
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0.0226
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0328
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-8.648061e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.575
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.119
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0918
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.144
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0328
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.27
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0328
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.416
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0.0633
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.536
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.144
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0328
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0633
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0328
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10628

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0113
MA0003.1	MA0003.1	0.222
MA0004.1	MA0004.1	0.0941
MA0006.1	MA0006.1	0.547
MA0007.1	MA0007.1	0.484
MA0009.1	MA0009.1	0.51
MA0014.1	MA0014.1	0.787
MA0017.1	MA0017.1	0.238
MA0018.2	MA0018.2	0.778
MA0019.1	MA0019.1	0.0576
MA0024.1	MA0024.1	0.227
MA0025.1	MA0025.1	0.362
MA0027.1	MA0027.1	0.706
MA0028.1	MA0028.1	0.0035
MA0029.1	MA0029.1	0.151
MA0030.1	MA0030.1	4.84061e-7
MA0031.1	MA0031.1	0.00629
MA0035.2	MA0035.2	0.866
MA0038.1	MA0038.1	0.553
MA0039.2	MA0039.2	0.471
MA0040.1	MA0040.1	0.133
MA0041.1	MA0041.1	0.0517
MA0042.1	MA0042.1	0.116
MA0043.1	MA0043.1	0.424
MA0046.1	MA0046.1	3.68883e-4
MA0047.2	MA0047.2	4.50346e-4
MA0048.1	MA0048.1	0.105
MA0050.1	MA0050.1	0.0554
MA0051.1	MA0051.1	0.285
MA0052.1	MA0052.1	0.0018
MA0055.1	MA0055.1	0.012
MA0057.1	MA0057.1	0.978
MA0058.1	MA0058.1	0.0541
MA0059.1	MA0059.1	0.00161
MA0060.1	MA0060.1	0.569
MA0061.1	MA0061.1	0.00966
MA0062.2	MA0062.2	2.19853e-4
MA0065.2	MA0065.2	0.022
MA0066.1	MA0066.1	0.00564
MA0067.1	MA0067.1	0.153
MA0068.1	MA0068.1	0.00223
MA0069.1	MA0069.1	0.713
MA0070.1	MA0070.1	0.533
MA0071.1	MA0071.1	0.0607
MA0072.1	MA0072.1	0.264
MA0073.1	MA0073.1	0.654
MA0074.1	MA0074.1	0.904
MA0076.1	MA0076.1	0.00596
MA0077.1	MA0077.1	0.937
MA0078.1	MA0078.1	0.138
MA0079.2	MA0079.2	0.176
MA0080.2	MA0080.2	0.354
MA0081.1	MA0081.1	0.348
MA0083.1	MA0083.1	3.59605e-5
MA0084.1	MA0084.1	0.907
MA0087.1	MA0087.1	0.221
MA0088.1	MA0088.1	0.0722
MA0090.1	MA0090.1	0.114
MA0091.1	MA0091.1	0.806
MA0092.1	MA0092.1	0.926
MA0093.1	MA0093.1	0.111
MA0099.2	MA0099.2	4.07904e-10
MA0100.1	MA0100.1	0.181
MA0101.1	MA0101.1	0.0399
MA0102.2	MA0102.2	0.729
MA0103.1	MA0103.1	0.593
MA0104.2	MA0104.2	0.00279
MA0105.1	MA0105.1	1.17025e-7
MA0106.1	MA0106.1	0.305
MA0107.1	MA0107.1	0.0535
MA0108.2	MA0108.2	1.45947e-18
MA0111.1	MA0111.1	0.387
MA0112.2	MA0112.2	0.0179
MA0113.1	MA0113.1	0.906
MA0114.1	MA0114.1	0.0495
MA0115.1	MA0115.1	0.0192
MA0116.1	MA0116.1	1.28087e-4
MA0117.1	MA0117.1	0.401
MA0119.1	MA0119.1	0.226
MA0122.1	MA0122.1	0.407
MA0124.1	MA0124.1	0.388
MA0125.1	MA0125.1	0.267
MA0131.1	MA0131.1	0.488
MA0135.1	MA0135.1	0.253
MA0136.1	MA0136.1	0.0404
MA0137.2	MA0137.2	0.0162
MA0138.2	MA0138.2	0.307
MA0139.1	MA0139.1	0.346
MA0140.1	MA0140.1	0.357
MA0141.1	MA0141.1	0.00944
MA0142.1	MA0142.1	0.154
MA0143.1	MA0143.1	0.673
MA0144.1	MA0144.1	0.47
MA0145.1	MA0145.1	0.293
MA0146.1	MA0146.1	0.388
MA0147.1	MA0147.1	8.46635e-4
MA0148.1	MA0148.1	0.00364
MA0149.1	MA0149.1	0.0199
MA0150.1	MA0150.1	0.0012
MA0152.1	MA0152.1	0.656
MA0153.1	MA0153.1	8.20404e-4
MA0154.1	MA0154.1	0.0616
MA0155.1	MA0155.1	0.814
MA0156.1	MA0156.1	0.0193
MA0157.1	MA0157.1	0.284
MA0159.1	MA0159.1	0.0697
MA0160.1	MA0160.1	0.0508
MA0162.1	MA0162.1	0.512
MA0163.1	MA0163.1	2.57426e-10
MA0164.1	MA0164.1	0.333
MA0258.1	MA0258.1	0.0159
MA0259.1	MA0259.1	0.0656

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10628

Novel motif	Logo	P-value
1	1	0.0122
10	10	0.0271
100	100	0.111
101	101	0.908
102	102	0.596
103	103	0.15
104	104	0.529
105	105	0.638
106	106	0.413
107	107	0.866
108	108	0.525
109	109	0.0206
11	11	0.035
110	110	0.0683
111	111	0.00237
112	112	0.681
113	113	0.461
114	114	0.00355
115	115	0.925
116	116	0.65
117	117	0.0139
118	118	0.0661
119	119	0.254
12	12	0.73
120	120	0.0442
121	121	0.489
122	122	0.72
123	123	0.0104
124	124	0.707
125	125	0.0791
126	126	0.789
127	127	0.572
128	128	0.932
129	129	0.443
13	13	0.062
130	130	0.375
131	131	0.161
132	132	0.235
133	133	0.135
134	134	0.121
135	135	0.239
136	136	0.401
137	137	0.34
138	138	0.611
139	139	0.0724
14	14	0.984
140	140	0.169
141	141	0.28
142	142	0.71
143	143	0.0175
144	144	0.999
145	145	0.405
146	146	0.881
147	147	0.641
148	148	0.0664
149	149	0.874
15	15	0.0369
150	150	0.485
151	151	0.729
152	152	0.714
153	153	0.636
154	154	0.682
155	155	0.202
156	156	0.463
157	157	0.947
158	158	0.331
159	159	0.738
16	16	0.0945
160	160	0.649
161	161	0.287
162	162	0.615
163	163	0.929
164	164	0.0187
165	165	0.782
166	166	0.559
167	167	0.0225
168	168	0.555
169	169	0.221
17	17	0.395
18	18	0.0307
19	19	0.856
2	2	0.186
20	20	0.0809
21	21	0.139
22	22	0.93
23	23	0.873
24	24	0.584
25	25	0.329
26	26	0.0134
27	27	0.958
28	28	0.689
29	29	0.0101
3	3	0.148
30	30	0.0617
31	31	0.87
32	32	0.222
33	33	0.15
34	34	0.571
35	35	0.168
36	36	0.0131
37	37	0.126
38	38	0.566
39	39	0.434
4	4	0.36
40	40	0.0699
41	41	0.0464
42	42	0.333
43	43	0.128
44	44	0.276
45	45	0.352
46	46	0.0575
47	47	0.0573
48	48	0.153
49	49	0.0625
5	5	0.389
50	50	0.63
51	51	0.623
52	52	0.421
53	53	0.97
54	54	0.879
55	55	0.406
56	56	0.808
57	57	0.105
58	58	0.569
59	59	0.647
6	6	0.461
60	60	0.696
61	61	0.254
62	62	0.232
63	63	0.475
64	64	0.169
65	65	0.573
66	66	0.117
67	67	0.321
68	68	0.851
69	69	0.478
7	7	0.234
70	70	0.0489
71	71	0.0334
72	72	0.977
73	73	0.113
74	74	0.274
75	75	0.00685
76	76	0.043
77	77	0.738
78	78	0.114
79	79	0.25
8	8	0.0917
80	80	0.702
81	81	0.335
82	82	0.399
83	83	0.454
84	84	0.824
85	85	0.415
86	86	0.672
87	87	0.128
88	88	0.906
89	89	0.528
9	9	0.523
90	90	0.0206
91	91	0.703
92	92	0.642
93	93	0.0624
94	94	0.0269
95	95	0.0114
96	96	0.666
97	97	0.897
98	98	0.0997
99	99	0.468

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10628

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010022 human prostate - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002367 (prostate gland)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010022 (human prostate - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0009847 (prostate field)
UBERON:0003353 (epithelium of hindgut)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005501
-|accession_numbers=CAGE;DRX008713;DRR009585;DRZ001010;DRZ002395
+|HumanCAGEScanFiles=NCig10021;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/prostate%252c%2520adult%252c%2520pool1.NCig10021.10022-101D4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/prostate%252c%2520adult%252c%2520pool1.NCig10021.10022-101D4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/prostate%252c%2520adult%252c%2520pool1.NCig10021.10022-101D4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/prostate%252c%2520adult%252c%2520pool1.NCig10021.10022-101D4.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008713;DRR009585;DRZ001010;DRZ002395;DRZ012360;DRZ013745
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002367,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.34!215.39!TCF21;;chr6:34524093..34524135,-!p1@SPDEF!2.11!127.55!SPDEF;;chr16:86544113..86544145,+!p1@FOXF1!1.90!95.76!FOXF1;;chr11:34642612..34642646,+!p1@EHF!1.90!77.55!EHF;;chr1:201979743..201979762,+!p1@ELF3!1.88!75.51!ELF3;;chr3:128212033..128212051,-!p1@GATA2!1.88!74.18!GATA2;;chr8:23540441..23540466,-!p1@NKX3-1!1.81!124.41!NKX3-1;;chr7:35293685..35293718,-!p1@TBX20!1.81!63.74!TBX20;;chr2:19558373..19558392,-!p1@OSR1!1.76!148.74!OSR1;;chr1:201979703..201979721,+!p2@ELF3!1.74!53.45!ELF3;;chr12:52437488..52437507,+!p2@NR4A1!1.73!52.90!NR4A1;;chr19:46801639..46801699,+!p1@HIF3A!1.69!47.65!HIF3A;;chr12:52445218..52445237,+!p1@NR4A1!1.67!544.19!NR4A1;;chr9:77112244..77112262,+!p1@RORB!1.67!51.65!RORB;;chr14:38064429..38064486,-!p1@FOXA1!1.63!41.29!FOXA1;;chr20:62680984..62680999,-!p1@SOX18!1.62!52.83!SOX18;;chr6:1312325..1312340,+!p1@FOXQ1!1.50!48.98!FOXQ1;;chr1:209979467..209979494,-!p1@IRF6!1.47!31.79!IRF6;;chr10:28034739..28034756,-!p1@MKX!1.46!27.94!MKX;;chr4:174451370..174451387,-!p1@HAND2!1.43!25.82!HAND2;;chrX:66763856..66763896,+!p1@AR!1.40!34.30!AR;;chr11:113930425..113930471,+!p1@ZBTB16!1.37!31.79!ZBTB16;;chrY:21906594..21906622,-!p1@KDM5D!1.37!22.61!KDM5D;;chr17:53342311..53342400,+!p1@HLF!1.36!25.04!HLF;;chr21:39870339..39870443,-!p1@ERG!1.35!21.35!ERG;;chr4:81118647..81118666,+!p1@PRDM8!1.34!27.79!PRDM8;;chr7:27239703..27239715,-!p1@HOXA13!1.33!20.25!HOXA13;;chr5:134369879..134369898,-!p2@PITX1!1.31!19.54!PITX1;;chr3:12330560..12330579,+!p1@PPARG!1.29!21.19!PPARG;;chr7:27224842..27224872,-!p1@HOXA11!1.29!18.60!HOXA11;;chr8:55370487..55370503,+!p1@SOX17!1.28!18.21!SOX17;;chr3:189507432..189507459,+!p1@TP63!1.28!18.21!TP63;;chr7:27239740..27239759,-!p2@HOXA13!1.28!18.05!HOXA13;;chr1:40105299..40105326,-!p1@HEYL!1.27!17.43!HEYL;;chr13:72441315..72441454,-!p1@DACH1!1.25!33.12!DACH1;;chr8:102504651..102504683,+!p1@GRHL2!1.25!16.88!GRHL2;;chr7:27192185..27192209,-!p1@HOXA3!1.25!16.72!HOXA3;;chr18:19749541..19749557,+!p1@GATA6!1.24!51.41!GATA6;;chr1:61548374..61548415,+!p4@NFIA!1.24!30.22!NFIA;;chr11:47400078..47400106,-!p1@SPI1!1.24!16.33!SPI1;;chr1:151804244..151804310,-!p1@RORC!1.23!16.01!RORC;;chr17:59529743..59529798,+!p1@TBX4!1.23!15.93!TBX4;;chr15:57511609..57511651,+!p2@TCF12!1.22!26.30!TCF12;;chr1:61547894..61547968,+!p2@NFIA!1.20!43.01!NFIA;;chr17:46806067..46806097,-!p1@HOXB13!1.20!14.91!HOXB13;;chr17:7492684..7492778,-!p2@SOX15!1.19!30.46!SOX15;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.19!14.60!PEG3;;chr7:44143925..44143970,+!p1@AEBP1!1.18!312.64!AEBP1;;chr16:79634624..79634642,-!p1@MAF!1.18!55.81!MAF;;chr4:174450089..174450153,-!p2@HAND2!1.18!14.13!HAND2;;chr12:115122005..115122016,-!p3@TBX3!1.17!16.33!TBX3;;chr9:114287433..114287513,+!p1@ZNF483!1.16!34.93!ZNF483;;chr6:1389789..1389821,+!p1@FOXF2!1.16!18.29!FOXF2;;chr1:170632285..170632309,+!p1@PRRX1!1.16!15.31!PRRX1;;chr7:27205136..27205164,-!p1@HOXA9!1.16!13.58!HOXA9;;chr11:34645791..34645836,+!p3@EHF!1.15!13.27!EHF;;chr7:27224795..27224840,-!p2@HOXA11!1.15!13.11!HOXA11;;chr1:164528410..164528428,+!p1@PBX1!1.14!95.45!PBX1;;chr8:99956662..99956684,+!p1@OSR2!1.14!19.70!OSR2;;chr2:145277882..145277967,-!p3@ZEB2!1.12!21.19!ZEB2;;chr3:126076242..126076257,-!p1@KLF15!1.12!15.15!KLF15;;chr17:46806035..46806059,-!p2@HOXB13!1.12!12.32!HOXB13;;chr14:38064590..38064606,-!p2@FOXA1!1.12!12.17!FOXA1;;chr6:19837592..19837621,+!p1@ID4!1.11!73.31!ID4;;chr1:61548069..61548102,+!p3@NFIA!1.11!28.65!NFIA;;chr20:61051039..61051057,-!p1@GATA5!1.11!11.93!GATA5;;chr5:92919100..92919135,+!p3@NR2F1!1.10!14.29!NR2F1;;chr8:10588010..10588030,-!p1@SOX7!1.10!11.62!SOX7;;chr12:115122318..115122331,-!p2@TBX3!1.10!11.62!TBX3;;chr5:50679228..50679288,+!p1@ISL1!1.09!11.38!ISL1;;chr17:80797886..80797906,-!p1@ZNF750!1.09!11.30!ZNF750;;chr3:128206762..128206781,-!p2@GATA2!1.08!69.47!GATA2;;chr11:113930291..113930339,+!p2@ZBTB16!1.08!17.97!ZBTB16;;chrX:66763914..66763933,+!p3@AR!1.08!11.07!AR;;chr7:63505799..63505904,+!p1@ZNF727!1.08!10.99!ZNF727;;chr12:115121962..115121987,-!p1@TBX3!1.07!90.90!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!1.07!47.96!NR2F1;;chr20:51588873..51588953,+!p1@TSHZ2!1.07!14.44!TSHZ2;;chr16:85932760..85932775,+!p1@IRF8!1.07!10.83!IRF8;;chr11:113930401..113930422,+!p3@ZBTB16!1.07!10.75!ZBTB16;;chr22:38380543..38380569,-!p1@SOX10!1.07!10.68!SOX10;;chr5:134369905..134369972,-!p1@PITX1!1.06!16.17!PITX1;;chr2:68592406..68592424,+!p1@PLEK!1.06!10.44!PLEK;;chr11:34642656..34642667,+!p2@EHF!1.04!9.97!EHF;;chr16:79634595..79634620,-!p2@MAF!1.03!17.90!MAF;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.03!10.36!GLIS1;;chr11:12696579..12696611,+!p4@TEAD1!1.03!9.73!TEAD1;;chr10:8096631..8096660,+!p1@GATA3!1.01!11.15!GATA3;;chr5:71803177..71803255,-!p1@ZNF366!1.01!9.26!ZNF366;;chr7:27213893..27213954,-!p1@HOXA10!1.01!9.26!HOXA10;;chr3:114819124..114819200,-!p3@ZBTB20!1.00!21.51!ZBTB20;;chr16:79633894..79633954,-!p3@MAF!1.00!17.82!MAF;;chr7:15726296..15726315,-!p1@MEOX2!1.00!9.11!MEOX2;;c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CA2;;chr10:63809077..63809089,+!p5@ARID5B!0.46!5.02!ARID5B;;chr19:35455160..35455197,-!p2@ZNF792!0.46!3.38!ZNF792;;chr6:36355513..36355578,-!p2@ETV7!0.46!2.59!ETV7;;chr11:47279248..47279264,+!p3@NR1H3!0.46!2.28!NR1H3;;chr10:119301928..119301955,+!p7@EMX2!0.46!1.88!EMX2;;chr10:31610110..31610159,+!p2@ZEB1!0.46!1.88!ZEB1;;chr12:52448293..52448318,+!p10@NR4A1!0.46!1.88!NR4A1;;chr8:102504690..102504704,+!p3@GRHL2!0.46!1.88!GRHL2;;chr8:93074803..93074845,-!p1@RUNX1T1!0.46!1.88!RUNX1T1;;chr18:45663490..45663528,-!p2@ZBTB7C!0.46!1.88!ZBTB7C;;chr18:53089453..53089482,-!p11@TCF4!0.46!1.88!TCF4;;chr18:53089538..53089578,-!p14@TCF4!0.46!1.88!TCF4;;chr2:214015343..214015366,-!p3@IKZF2!0.46!1.88!IKZF2;;chr3:181429741..181429767,+!p2@SOX2!0.46!1.88!SOX2;;chr3:63953435..63953499,+!p1@ATXN7!0.46!1.88!ATXN7;;chr19:12902289..12902307,+!p1@JUNB!0.45!596.08!JUNB;;chr2:43453734..43453751,-!p1@ZFP36L2!0.45!273.23!ZFP36L2;;chr3:5021113..5021180,+!p1@BHLHE40!0.45!178.26!BHLHE40;;chr15:100106155..100106243,+!p1@MEF2A!0.45!67.35!MEF2A;;chr19:12721725..12721758,+!p1@ZNF791!0.45!44.19!ZNF791;;chr3:23986762..23986821,+!p1@NR1D2!0.45!38.93!NR1D2;;chr7:6746529..6746591,-!p1@ZNF12!0.45!34.69!ZNF12;;chr22:41777927..41777971,+!p1@TEF!0.45!20.80!TEF;;chr13:41240717..41240735,-!p2@FOXO1!0.45!17.11!FOXO1;;chr2:145275162..145275202,-!p2@ZEB2!0.45!14.68!ZEB2;;chr2:85360499..85360598,+!p1@TCF7L1!0.45!13.89!TCF7L1;;chr19:19976683..19976709,+!p1@ZNF253!0.45!10.68!ZNF253;;chr19:53696587..53696633,-!p1@ZNF665!0.45!8.79!ZNF665;;chr10:43133950..43133994,-!p2@ZNF33B!0.45!8.56!ZNF33B;;chr4:4861385..4861398,+!p1@MSX1!0.45!6.91!MSX1;;chr9:117150254..117150271,-!p1@AKNA!0.45!6.36!AKNA;;chr19:38085633..38085706,-!p1@ZNF571!0.45!5.97!ZNF571;;chr11:12696002..12696022,+!p2@TEAD1!0.45!5.65!TEAD1;;chr17:38256932..38256965,-!p4@NR1D1!0.45!5.02!NR1D1;;chr19:52839515..52839572,+!p1@ZNF610!0.45!4.87!ZNF610;;chr2:157199008..157199023,-!p3@NR4A2!0.45!4.71!NR4A2;;chr2:239756739..239756755,+!p2@TWIST2!0.45!3.69!TWIST2;;chr19:12175504..12175519,+!p2@ZNF844!0.45!2.90!ZNF844;;chr6:126240356..126240379,+!p7@NCOA7!0.45!2.43!NCOA7;;chr19:13213511..13213545,-!p2@LYL1!0.45!2.04!LYL1;;chr17:46675558..46675577,-!p2@HOXB6!0.45!1.81!HOXB6;;chr2:171571931..171571959,+!p3@SP5!0.45!1.81!SP5;;chr2:180524914..180524925,-!p17@ZNF385B!0.45!1.81!ZNF385B;;chr1:164528942..164528964,+!p11@PBX1!0.45!1.81!PBX1;;chr1:170632137..170632172,+!p10@PRRX1!0.45!1.81!PRRX1;;chr1:63788229..63788250,+!p1@FOXD3!0.45!1.81!FOXD3;;chr20:48808064..48808086,+!p15@CEBPB!0.45!1.81!CEBPB;;chrX:24167086..24167111,+!p4@ZFX!0.45!1.81!ZFX;;chr1:23885981..23886002,-!p1@ID3!0.44!436.19!ID3;;chr12:11802600..11802685,+!p1@ETV6!0.44!37.83!ETV6;;chr4:331578..331615,+!p1@ZNF141!0.44!26.84!ZNF141;;chr7:64023441..64023462,-!p1@ZNF680!0.44!19.23!ZNF680;;chr19:11925071..11925113,+!p1@ZNF440!0.44!17.66!ZNF440;;chr8:49833948..49833973,-!p2@SNAI2!0.44!15.54!SNAI2;;chr2:60780753..60780800,-!p1@BCL11A!0.44!11.85!BCL11A;;chr19:12405645..12405685,-!p1@ZNF44!0.44!8.32!ZNF44;;chr19:44809143..44809187,-!p1@ZNF235!0.44!6.91!ZNF235;;chr9:3525910..3525955,-!p4@RFX3!0.44!6.83!RFX3;;chr12:53625966..53626012,-!p2@RARG!0.44!5.89!RARG;;chr19:31840313..31840380,-!p1@TSHZ3!0.44!5.73!TSHZ3;;chrX:70315688..70315709,+!p1@FOXO4!0.44!5.18!FOXO4;;chr6:42419514..42419606,-!p1@TRERF1!0.44!4.87!TRERF1;;chr19:56879472..56879529,+!p2@ZNF542!0.44!4.71!ZNF542;;chr5:88179195..88179224,-!p3@MEF2C!0.44!3.22!MEF2C;;chr7:64023410..64023428,-!p2@ZNF680!0.44!3.22!ZNF680;;chr10:63809090..63809097,+!p7@ARID5B!0.44!2.75!ARID5B;;chr9:73029018..73029042,-!p6@KLF9!0.44!2.59!KLF9;;chr14:75746722..75746777,+!p2@FOS!0.44!2.51!FOS;;chr3:141087144..141087170,+!p11@ZBTB38!0.44!2.43!ZBTB38;;chr19:37998036..37998098,+!p2@ZNF793!0.44!2.35!ZNF793;;chr9:2017365..2017380,+!p9@SMARCA2!0.44!2.35!SMARCA2;;chr15:80696666..80696700,+!p4@ARNT2!0.44!1.73!ARNT2;;chr17:41738684..41738704,-!p2@MEOX1!0.44!1.73!MEOX1;;chr17:46655672..46655697,-!p3@HOXB4!0.44!1.73!HOXB4;;chr7:35293665..35293680,-!p2@TBX20!0.44!1.73!TBX20;;chr2:100721881..100721904,-!p6@AFF3!0.44!1.73!AFF3;;chr2:180726058..180726098,-!p3@ZNF385B!0.44!1.73!ZNF385B;;chr11:100999802..100999819,-!p4@PGR!0.44!1.73!PGR;;chr12:115122224..115122233,-!p12@TBX3!0.44!1.73!TBX3;;chr1:170632250..170632277,+!p7@PRRX1!0.44!1.73!PRRX1;;chr1:61542922..61542955,+!p10@NFIA!0.44!1.73!NFIA;;chr1:8586084..8586100,-!p20@RERE!0.44!1.73!RERE;;chr20:2673369..2673382,+!p2@EBF4!0.44!1.73!EBF4;;chr20:51589133..51589159,+!p2@TSHZ2!0.44!1.73!TSHZ2;;chr1:59249707..59249727,-!p1@JUN!0.43!103.77!JUN;;chr9:110252035..110252057,-!p1@KLF4!0.43!38.46!KLF4;;chr17:36861496..36861586,+!p1@MLLT6!0.43!23.39!MLLT6;;chr19:45909594..45909625,-!p2@PPP1R13L!0.43!10.68!PPP1R13L;;chr8:77593474..77593612,+!p1@ZFHX4!0.43!9.65!ZFHX4;;chr8:81398444..81398472,+!p1@ZBTB10!0.43!9.34!ZBTB10;;chr12:80084737..80084763,-!p3@PAWR!0.43!8.56!PAWR;;chr17:38219143..38219154,+!p2@THRA!0.43!8.01!THRA;;chr15:57210961..57211012,+!p3@TCF12!0.43!7.22!TCF12;;chr5:178487354..178487408,+!p1@ZNF354C!0.43!6.5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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0009847,UBERON:0003353,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10022-101D4
 |is_a=EFO:0002091;;FF:0010022
 |is_obsolete=
 |library_id=CNhs10628
-|library_id_phase_based=1:CNhs10628
+|library_id_phase_based=2:CNhs10628
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10022
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10022
 |name=prostate, adult, pool1
 |namespace=FANTOM5
@@ Line 51: / Line 62: @@
 |profile_cagescan=NCig10021,,,
 |profile_hcage=CNhs10628,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10022-101D4;search_select_hide=table117:FF:10022-101D4
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Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0