FF:12194-129B7: Difference between revisions

Latest revision as of 18:34, 4 June 2020

Name:	CD19+ B Cells (pluriselect), donor090309, donation2
Species:	Human (Homo sapiens)
Library ID:	CNhs12179,RDhi10008
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	b cell
cell line	NA
company	NA
collaboration	Matched_genome_OSC(contact:Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
RNA-Seq		SAMD00013698

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12179		CAGE		DRX008051		DRR008923
RDhi10008		RNA-Seq		DRX012342		DRR013790

Accession ID Hg19

Library id		BAM		CTSS
CNhs12179		DRZ000348		DRZ001733
RDhi10008		DRZ002991

Accession ID Hg38

Library id		BAM		CTSS
CNhs12179		DRZ011698		DRZ013083
RDhi10008

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0413
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.221
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.112
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.336
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.316
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.421
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.468
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.683
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.256
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.425
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.408
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.146
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.546
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.189
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0237
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.421
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.189
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	1.012
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.189
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.467
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.196
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.189
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.255
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	1.056
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.772
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12179

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.84597e-6
MA0003.1	MA0003.1	0.498
MA0004.1	MA0004.1	0.485
MA0006.1	MA0006.1	0.413
MA0007.1	MA0007.1	0.413
MA0009.1	MA0009.1	0.921
MA0014.1	MA0014.1	0.781
MA0017.1	MA0017.1	0.0337
MA0018.2	MA0018.2	0.834
MA0019.1	MA0019.1	0.997
MA0024.1	MA0024.1	0.686
MA0025.1	MA0025.1	0.114
MA0027.1	MA0027.1	0.459
MA0028.1	MA0028.1	2.23461e-5
MA0029.1	MA0029.1	0.778
MA0030.1	MA0030.1	0.0213
MA0031.1	MA0031.1	0.0341
MA0035.2	MA0035.2	0.495
MA0038.1	MA0038.1	0.265
MA0039.2	MA0039.2	0.482
MA0040.1	MA0040.1	0.762
MA0041.1	MA0041.1	0.21
MA0042.1	MA0042.1	0.994
MA0043.1	MA0043.1	0.607
MA0046.1	MA0046.1	0.981
MA0047.2	MA0047.2	0.244
MA0048.1	MA0048.1	0.439
MA0050.1	MA0050.1	2.05256e-12
MA0051.1	MA0051.1	1.15711e-6
MA0052.1	MA0052.1	0.671
MA0055.1	MA0055.1	0.568
MA0057.1	MA0057.1	0.777
MA0058.1	MA0058.1	0.385
MA0059.1	MA0059.1	0.385
MA0060.1	MA0060.1	0.578
MA0061.1	MA0061.1	1.88873e-5
MA0062.2	MA0062.2	1.59819e-15
MA0065.2	MA0065.2	0.033
MA0066.1	MA0066.1	0.491
MA0067.1	MA0067.1	0.678
MA0068.1	MA0068.1	0.432
MA0069.1	MA0069.1	0.545
MA0070.1	MA0070.1	0.296
MA0071.1	MA0071.1	0.896
MA0072.1	MA0072.1	0.864
MA0073.1	MA0073.1	0.693
MA0074.1	MA0074.1	0.785
MA0076.1	MA0076.1	8.43056e-9
MA0077.1	MA0077.1	0.304
MA0078.1	MA0078.1	0.597
MA0079.2	MA0079.2	0.576
MA0080.2	MA0080.2	3.81202e-12
MA0081.1	MA0081.1	1.93979e-4
MA0083.1	MA0083.1	0.0156
MA0084.1	MA0084.1	0.333
MA0087.1	MA0087.1	0.324
MA0088.1	MA0088.1	0.111
MA0090.1	MA0090.1	1.39102e-4
MA0091.1	MA0091.1	0.784
MA0092.1	MA0092.1	0.995
MA0093.1	MA0093.1	0.592
MA0099.2	MA0099.2	7.41371e-6
MA0100.1	MA0100.1	0.169
MA0101.1	MA0101.1	0.0129
MA0102.2	MA0102.2	0.338
MA0103.1	MA0103.1	0.00544
MA0104.2	MA0104.2	0.144
MA0105.1	MA0105.1	1.56102e-7
MA0106.1	MA0106.1	0.393
MA0107.1	MA0107.1	0.00578
MA0108.2	MA0108.2	3.41759e-9
MA0111.1	MA0111.1	0.311
MA0112.2	MA0112.2	0.047
MA0113.1	MA0113.1	0.907
MA0114.1	MA0114.1	0.106
MA0115.1	MA0115.1	0.189
MA0116.1	MA0116.1	1.28306e-5
MA0117.1	MA0117.1	0.733
MA0119.1	MA0119.1	0.666
MA0122.1	MA0122.1	0.236
MA0124.1	MA0124.1	0.889
MA0125.1	MA0125.1	0.859
MA0131.1	MA0131.1	0.127
MA0135.1	MA0135.1	0.0508
MA0136.1	MA0136.1	2.99144e-18
MA0137.2	MA0137.2	0.804
MA0138.2	MA0138.2	0.753
MA0139.1	MA0139.1	0.16
MA0140.1	MA0140.1	0.149
MA0141.1	MA0141.1	0.928
MA0142.1	MA0142.1	0.2
MA0143.1	MA0143.1	0.586
MA0144.1	MA0144.1	0.665
MA0145.1	MA0145.1	0.816
MA0146.1	MA0146.1	0.152
MA0147.1	MA0147.1	0.132
MA0148.1	MA0148.1	0.646
MA0149.1	MA0149.1	0.119
MA0150.1	MA0150.1	0.312
MA0152.1	MA0152.1	0.283
MA0153.1	MA0153.1	0.0445
MA0154.1	MA0154.1	2.29679e-4
MA0155.1	MA0155.1	0.636
MA0156.1	MA0156.1	2.04043e-15
MA0157.1	MA0157.1	0.0898
MA0159.1	MA0159.1	0.0763
MA0160.1	MA0160.1	0.579
MA0162.1	MA0162.1	0.934
MA0163.1	MA0163.1	4.62056e-9
MA0164.1	MA0164.1	0.684
MA0258.1	MA0258.1	0.159
MA0259.1	MA0259.1	0.52

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12179

Novel motif	Logo	P-value
1	1	0.104
10	10	0.0263
100	100	0.613
101	101	0.126
102	102	0.834
103	103	0.122
104	104	0.174
105	105	0.418
106	106	0.699
107	107	0.286
108	108	0.455
109	109	0.0771
11	11	0.0936
110	110	0.102
111	111	0.101
112	112	0.308
113	113	0.0229
114	114	0.358
115	115	0.928
116	116	0.712
117	117	0.00158
118	118	0.209
119	119	0.722
12	12	0.94
120	120	0.738
121	121	0.259
122	122	0.55
123	123	0.0346
124	124	0.216
125	125	0.168
126	126	0.207
127	127	0.597
128	128	0.436
129	129	0.689
13	13	0.443
130	130	0.349
131	131	0.604
132	132	0.373
133	133	0.00539
134	134	0.787
135	135	0.665
136	136	0.438
137	137	0.109
138	138	0.334
139	139	0.119
14	14	0.306
140	140	0.243
141	141	0.153
142	142	0.368
143	143	0.0864
144	144	0.893
145	145	0.227
146	146	0.199
147	147	0.0661
148	148	0.137
149	149	0.399
15	15	0.134
150	150	0.673
151	151	0.644
152	152	0.688
153	153	0.854
154	154	0.999
155	155	0.00762
156	156	0.47
157	157	0.251
158	158	0.196
159	159	0.132
16	16	0.764
160	160	0.447
161	161	0.0785
162	162	0.637
163	163	0.26
164	164	0.438
165	165	0.114
166	166	0.421
167	167	0.126
168	168	0.105
169	169	0.507
17	17	0.9
18	18	0.652
19	19	0.694
2	2	0.811
20	20	0.575
21	21	0.698
22	22	0.753
23	23	0.535
24	24	0.386
25	25	0.0328
26	26	0.222
27	27	0.278
28	28	0.452
29	29	0.102
3	3	0.0461
30	30	0.373
31	31	0.701
32	32	0.239
33	33	0.635
34	34	0.766
35	35	0.111
36	36	0.0346
37	37	0.164
38	38	0.465
39	39	0.405
4	4	0.562
40	40	0.255
41	41	0.191
42	42	0.0978
43	43	0.16
44	44	0.596
45	45	0.94
46	46	0.155
47	47	0.0747
48	48	0.107
49	49	0.0993
5	5	0.468
50	50	0.947
51	51	0.557
52	52	0.424
53	53	0.293
54	54	0.713
55	55	0.0406
56	56	0.621
57	57	0.422
58	58	0.023
59	59	0.319
6	6	0.975
60	60	0.592
61	61	0.0257
62	62	0.0245
63	63	0.76
64	64	0.252
65	65	0.822
66	66	0.747
67	67	0.304
68	68	0.461
69	69	0.602
7	7	0.143
70	70	0.168
71	71	0.0335
72	72	0.0422
73	73	0.506
74	74	0.39
75	75	0.00699
76	76	0.0697
77	77	0.63
78	78	0.165
79	79	0.334
8	8	0.542
80	80	0.00345
81	81	0.2
82	82	0.112
83	83	0.838
84	84	0.257
85	85	0.933
86	86	0.0863
87	87	0.171
88	88	0.59
89	89	0.716
9	9	0.533
90	90	0.0408
91	91	0.503
92	92	0.713
93	93	0.877
94	94	0.036
95	95	0.00476
96	96	0.471
97	97	0.451
98	98	0.233
99	99	0.0655

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12179

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000025 CD19-positive B cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=RNA-Seq@SAMD00013698!CAGE@SAMD00005696
+|DRA_sample_Accession=RNA-Seq@SAMD00013698
-|accession_numbers=CAGE;DRX008051;DRR008923;DRZ000348;DRZ001733!RNA-Seq;DRX012342;DRR013790;DRZ002991;NA
+|accession_numbers=CAGE;DRX008051;DRR008923;DRZ000348;DRZ001733;DRZ011698;DRZ013083!RNA-Seq;DRX012342;DRR013790;DRZ002991;
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.53!338.06!IRF8;;chr19:50922187..50922204,+!p1@SPIB!2.41!253.41!SPIB;;chr2:100759010..100759035,-!p1@AFF3!2.38!236.48!AFF3;;chr11:111249993..111250006,-!p1@POU2AF1!2.32!209.17!POU2AF1;;chr11:47400078..47400106,-!p1@SPI1!2.09!120.70!SPI1;;chr6:391743..391759,+!p1@IRF4!2.08!118.51!IRF4;;chr2:100759037..100759058,-!p2@AFF3!2.08!117.97!AFF3;;chr2:231090433..231090469,+!p1@SP140!2.04!109.23!SP140;;chr6:91006518..91006570,-!p1@BACH2!2.00!218.46!BACH2;;chr2:231090471..231090504,+!p2@SP140!1.95!87.38!SP140;;chr3:71355163..71355209,-!p5@FOXP1!1.84!92.84!FOXP1;;chr17:38020392..38020477,-!p1@IKZF3!1.83!66.63!IKZF3;;chr5:88178983..88179012,-!p1@MEF2C!1.81!468.04!MEF2C;;chr8:86099884..86099918,+!p4@E2F5!1.81!63.35!E2F5;;chr2:100758991..100759009,-!p3@AFF3!1.75!55.16!AFF3;;chr6:91006575..91006602,-!p2@BACH2!1.73!77.55!BACH2;;chr3:32023232..32023273,+!p1@ZNF860!1.73!73.73!ZNF860;;chr2:68592406..68592424,+!p1@PLEK!1.69!48.06!PLEK;;chr7:50343634..50343717,+!p2@IKZF1!1.65!43.69!IKZF1;;chr17:38020557..38020572,-!p4@IKZF3!1.62!40.96!IKZF3;;chr2:60780607..60780624,-!p2@BCL11A!1.60!114.14!BCL11A;;chr7:50344251..50344288,+!p3@IKZF1!1.59!38.23!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.55!34.41!ZBP1;;chr19:16435625..16435682,+!p1@KLF2!1.52!986.87!KLF2;;chr7:50344289..50344323,+!p1@IKZF1!1.51!31.13!IKZF1;;chr8:86089627..86089653,+!p3@E2F5!1.50!34.41!E2F5;;chr19:13213662..13213686,-!p1@LYL1!1.48!43.14!LYL1;;chr5:158526756..158526797,-!p3@EBF1!1.43!25.67!EBF1;;chr2:60778035..60778060,-!p4@BCL11A!1.40!28.40!BCL11A;;chr2:60781201..60781258,-!p3@BCL11A!1.40!24.03!BCL11A;;chr2:68592394..68592405,+!p2@PLEK!1.37!22.39!PLEK;;chr7:50348268..50348366,+!p4@IKZF1!1.37!22.39!IKZF1;;chr17:37934204..37934241,-!p3@IKZF3!1.36!21.85!IKZF3;;chr4:57522513..57522548,-!p4@HOPX!1.35!21.30!HOPX;;chr13:41593425..41593480,-!p1@ELF1!1.34!127.80!ELF1;;chr1:25256756..25256774,-!p1@RUNX3!1.34!38.78!RUNX3;;chr4:185395633..185395651,-!p2@IRF2!1.34!33.31!IRF2;;chr7:77469439..77469459,+!p6@PHTF2!1.34!20.75!PHTF2;;chr8:86089531..86089544,+!p7@E2F5!1.32!19.66!E2F5;;chr10:94449703..94449718,+!p1@HHEX!1.31!73.73!HHEX;;chr3:71409904..71409927,-!p46@FOXP1!1.30!19.11!FOXP1;;chr7:63505799..63505904,+!p1@ZNF727!1.29!18.57!ZNF727;;chr17:45810594..45810608,+!p1@TBX21!1.25!16.93!TBX21;;chr18:52989031..52989079,-!p2@TCF4!1.24!38.23!TCF4;;chr17:38020516..38020544,-!p5@IKZF3!1.24!16.38!IKZF3;;chr20:50159198..50159299,-!p1@NFATC2!1.23!23.48!NFATC2;;chr14:75988771..75988826,+!p1@BATF!1.23!21.30!BATF;;chr17:38020607..38020621,-!p9@IKZF3!1.23!15.84!IKZF3;;chr5:88179017..88179046,-!p2@MEF2C!1.22!62.26!MEF2C;;chr19:42636586..42636607,-!p1@POU2F2!1.22!43.14!POU2F2;;chr19:36391434..36391450,-!p1@NFKBID!1.22!30.58!NFKBID;;chr19:13213704..13213726,-!p3@LYL1!1.22!20.75!LYL1;;chr1:151319654..151319698,-!p2@RFX5!1.21!32.77!RFX5;;chr6:91006503..91006517,-!p3@BACH2!1.21!15.29!BACH2;;chr7:64838786..64838809,+!p2@ZNF92!1.19!82.47!ZNF92;;chr3:71631151..71631194,-!p15@FOXP1!1.19!16.38!FOXP1;;chr4:185395590..185395627,-!p3@IRF2!1.17!16.93!IRF2;;chr9:37034186..37034216,-!p2@PAX5!1.17!13.65!PAX5;;chr11:128563948..128564003,+!p1@FLI1!1.15!155.65!FLI1;;chr5:88120151..88120177,-!p6@MEF2C!1.15!13.11!MEF2C;;chr7:50343895..50343936,+!p5@IKZF1!1.15!13.11!IKZF1;;chr2:100759060..100759073,-!p8@AFF3!1.13!12.56!AFF3;;chr19:45579725..45579743,-!p1@ZNF296!1.12!54.61!ZNF296;;chr3:18486354..18486377,-!p2@SATB1!1.12!15.29!SATB1;;chr14:69262947..69262986,-!p3@ZFP36L1!1.12!14.75!ZFP36L1;;chr16:85936412..85936431,+!p2@IRF8!1.11!12.02!IRF8;;chr19:36204309..36204335,+!p1@ZBTB32!1.11!12.02!ZBTB32;;chr17:38020481..38020506,-!p7@IKZF3!1.10!11.47!IKZF3;;chr19:58220517..58220583,-!p1@ZNF154!1.08!35.50!ZNF154;;chr10:94449675..94449694,+!p2@HHEX!1.07!28.95!HHEX;;chr2:61108695..61108753,+!p1@REL!1.06!73.18!REL;;chr2:231090344..231090361,-!p3@SP110!1.06!10.38!SP110;;chrX:106960285..106960299,-!p1@TSC22D3!1.03!264.88!TSC22D3;;chrX:101186981..101187030,-!p1@ZMAT1!1.02!31.13!ZMAT1;;chrX:106960221..106960236,-!p3@TSC22D3!1.02!26.76!TSC22D3;;chr7:77428066..77428132,+!p2@PHTF2!1.01!61.17!PHTF2;;chr8:86089498..86089519,+!p6@E2F5!1.01!9.28!E2F5;;chr3:18487057..18487105,-!p4@SATB1!1.01!9.28!SATB1;;chr19:13213954..13214021,-!p4@LYL1!1.01!9.28!LYL1;;chr9:117150254..117150271,-!p1@AKNA!1.00!25.12!AKNA;;chr19:20748574..20748599,-!p1@ZNF737!0.99!54.07!ZNF737;;chrX:106960180..106960197,-!p2@TSC22D3!0.99!33.86!TSC22D3;;chr5:88179195..88179224,-!p3@MEF2C!0.99!14.20!MEF2C;;chr2:100759076..100759088,-!p10@AFF3!0.99!8.74!AFF3;;chr10:94451574..94451587,+!p6@HHEX!0.99!8.74!HHEX;;chr2:145277640..145277771,-!p1@ZEB2!0.98!117.42!ZEB2;;chr2:61108650..61108687,+!p2@REL!0.98!42.60!REL;;chr19:19779619..19779670,+!p1@ZNF101!0.98!24.58!ZNF101;;chr6:157098579..157098634,+!p4@ARID1B!0.98!19.66!ARID1B;;chr10:104154246..104154347,+!p3@NFKB2!0.96!51.88!NFKB2;;chr9:3525727..3525828,-!p2@RFX3!0.96!21.30!RFX3;;chr11:47400062..47400077,-!p2@SPI1!0.96!8.19!SPI1;;chr5:158526709..158526741,-!p7@EBF1!0.96!8.19!EBF1;;chr3:71631217..71631234,-!p33@FOXP1!0.96!8.19!FOXP1;;chr2:231280954..231280965,+!p2@SP100!0.95!14.75!SP100;;chr7:128577972..128578047,+!p1@IRF5!0.95!12.56!IRF5;;chr19:11959532..11959593,+!p1@ZNF439!0.94!30.58!ZNF439;;chr16:3313791..3313834,+!p2@ZNF263!0.94!17.48!ZNF263;;chr17:56565257..56565283,-!p2@HSF5!0.94!7.65!HSF5;;chr6:41701898..41701939,-!p5@TFEB!0.94!7.65!TFEB;;chr3:71630844..71630862,-!p40@FOXP1!0.94!7.65!FOXP1;;chr3:71179699..71179744,-!p2@FOXP1!0.93!58.44!FOXP1;;chr4:81104895..81104920,+!p2@PRDM8!0.93!11.47!PRDM8;;chr2:231084659..231084721,-!p1@SP110!0.92!178.59!SP110;;chr21:36421535..36421610,-!p2@RUNX1!0.92!27.31!RUNX1;;chr12:24715376..24715432,-!p1@SOX5!0.92!9.28!SOX5;;chr7:64126503..64126528,+!p1@ZNF107!0.91!52.43!ZNF107;;chr11:128392273..128392308,-!p2@ETS1!0.91!31.68!ETS1;;chrX:106960249..106960260,-!p5@TSC22D3!0.91!11.47!TSC22D3;;chr9:37003148..37003152,-!p5@PAX5!0.91!7.10!PAX5;;chr9:37027156..37027193,-!p4@PAX5!0.91!7.10!PAX5;;chr14:69262916..69262929,-!p11@ZFP36L1!0.91!7.10!ZFP36L1;;chr14:69263043..69263069,-!p8@ZFP36L1!0.91!7.10!ZFP36L1;;chrX:56258844..56258882,+!p1@KLF8!0.90!9.83!KLF8;;chr11:128392085..128392232,-!p1@ETS1!0.89!240.30!ETS1;;chr1:10754477..10754517,-!p1@CASZ1!0.89!11.47!CASZ1;;chr20:46130672..46130686,+!p2@NCOA3!0.88!30.58!NCOA3;;chr18:42260030..42260055,+!p3@SETBP1!0.88!8.19!SETBP1;;chr6:41700616..41700664,-!p8@TFEB!0.88!6.55!TFEB;;chr7:64126535..64126559,+!p2@ZNF107!0.87!14.20!ZNF107;;chr1:158979686..158979745,+!p1@IFI16!0.86!218.46!IFI16;;chr3:129158768..129158819,-!p1@MBD4!0.86!100.49!MBD4;;chr9:37034258..37034270,-!p3@PAX5!0.85!6.01!PAX5;;chr18:52989001..52989030,-!p10@TCF4!0.84!6.55!TCF4;;chr7:21467674..21467727,+!p1@SP4!0.83!24.58!SP4;;chr19:52956798..52956843,+!p1@ZNF578!0.83!12.02!ZNF578;;chrX:131623044..131623089,-!p1@MBNL3!0.82!25.12!MBNL3;;chr2:208394817..208394834,+!p3@CREB1!0.82!24.03!CREB1;;chr19:38085768..38085821,+!p1@ZNF540!0.82!8.74!ZNF540;;chr2:231191875..231191918,+!p1@SP140L!0.81!57.89!SP140L;;chr8:123793860..123793921,+!p2@ZHX2!0.81!15.84!ZHX2;;chr1:91487836..91487854,-!p3@ZNF644!0.81!13.11!ZNF644;;chr1:167298300..167298319,+!p2@POU2F1!0.81!5.46!POU2F1;;chr20:56195449..56195459,-!p4@ZBP1!0.81!5.46!ZBP1;;chr9:37034469..37034474,-!p1@PAX5!0.81!5.46!PAX5;;chr7:50344144..50344157,+!p6@IKZF1!0.81!5.46!IKZF1;;chr19:57183114..57183145,-!p1@ZNF835!0.80!6.01!ZNF835;;chr13:74707894..74707947,-!p6@KLF12!0.80!6.01!KLF12;;chr1:14026671..14026705,+!p2@PRDM2!0.79!33.86!PRDM2;;chr19:53289995..53290050,-!p1@ZNF600!0.79!22.94!ZNF600;;chr19:37709076..37709154,+!p1@ZNF383!0.79!18.57!ZNF383;;chr13:74708029..74708077,-!p2@KLF12!0.79!15.84!KLF12;;chr10:43932296..43932360,+!p1@ZNF487P!0.79!11.47!ZNF487P;;chr13:41240737..41240787,-!p1@FOXO1!0.78!66.08!FOXO1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.78!43.14!L3MBTL3;;chr1:249132410..249132456,+!p1@ZNF672!0.78!41.51!ZNF672;;chr19:19976683..19976709,+!p1@ZNF253!0.78!24.03!ZNF253;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.66!ZBTB20;;chr1:41174988..41175047,+!p4@NFYC!0.78!14.20!NFYC;;chr16:68119440..68119480,+!p4@NFATC3!0.78!8.74!NFATC3;;chr16:68119324..68119364,+!p1@NFATC3!0.77!24.03!NFATC3;;chr2:148778973..148779035,+!p3@MBD5!0.77!13.65!MBD5;;chr19:22235279..22235301,+!p1@ZNF257!0.77!9.83!ZNF257;;chr6:144385698..144385742,-!p2@PLAGL1!0.77!6.01!PLAGL1;;chr16:85936539..85936562,+!p3@IRF8!0.77!4.92!IRF8;;chr17:37934138..37934150,-!p12@IKZF3!0.77!4.92!IKZF3;;chr17:37934188..37934202,-!p8@IKZF3!0.77!4.92!IKZF3;;chr19:22193731..22193751,-!p1@ZNF208!0.77!4.92!ZNF208;;chr1:161014760..161014788,-!p4@USF1!0.77!4.92!USF1;;chr4:57522674..57522699,-!p5@HOPX!0.77!4.92!HOPX;;chr6:41703296..41703367,-!p1@TFEB!0.76!26.21!TFEB;;chr14:64971288..64971316,-!p2@ZBTB25!0.76!15.84!ZBTB25;;chr19:58446721..58446779,-!p1@ZNF418!0.76!14.20!ZNF418;;chr19:9546177..9546224,-!p1@ZNF266!0.75!36.59!ZNF266;;chr17:5095126..5095169,-!p1@ZNF594!0.75!21.30!ZNF594;;chr18:6414884..6414942,-!p1@L3MBTL4!0.75!6.01!L3MBTL4;;chr2:231280908..231280945,+!p1@SP100!0.73!187.33!SP100;;chr2:208031542..208031595,-!p2@KLF7!0.73!34.41!KLF7;;chr19:49140609..49140643,-!p1@DBP!0.73!27.31!DBP;;chr2:60780753..60780800,-!p1@BCL11A!0.73!24.03!BCL11A;;chr19:58238958..58239000,-!p1@ZNF671!0.73!19.66!ZNF671;;chr17:42295777..42295816,-!p7@UBTF!0.73!5.46!UBTF;;chr1:158978768..158978800,+!p8@IFI16!0.73!4.37!IFI16;;chr1:25256439..25256476,-!p3@RUNX3!0.73!4.37!RUNX3;;chr20:52226313..52226350,-!p3@ZNF217!0.73!4.37!ZNF217;;chr13:41593493..41593506,-!p8@ELF1!0.73!4.37!ELF1;;chrX:56258900..56258917,+!p4@KLF8!0.73!4.37!KLF8;;chr5:131826457..131826514,-!p1@IRF1!0.72!188.96!IRF1;;chr19:53073532..53073551,+!p1@ZNF701!0.72!21.30!ZNF701;;chr6:28092375..28092412,+!p1@ZSCAN16!0.72!19.66!ZSCAN16;;chr10:94449649..94449664,+!p3@HHEX!0.72!6.55!HHEX;;chrX:131624056..131624069,-!p2@MBNL3!0.72!6.01!MBNL3;;chr19:58144529..58144579,+!p1@ZNF211!0.70!24.58!ZNF211;;chr17:4981745..4981810,+!p1@ZFP3!0.70!21.85!ZFP3;;chr19:47616992..47617011,-!p4@ZC3H4!0.70!9.28!ZC3H4;;chr6:43337124..43337144,-!p4@ZNF318!0.70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ZNF253!0.47!4.37!ZNF253;;chr1:226595648..226595659,-!p3@PARP1!0.47!3.82!PARP1;;chr3:71630690..71630750,-!p11@FOXP1!0.47!3.82!FOXP1;;chr4:124361..124372,+!p3@ZNF718!0.47!3.28!ZNF718;;chr2:231077626..231077651,-!p6@SP110!0.47!2.73!SP110;;chr3:107241875..107241880,+!p8@BBX!0.47!2.73!BBX;;chr2:48541789..48541874,+!p1@FOXN2!0.46!59.53!FOXN2;;chr1:235491462..235491510,-!p1@ARID4B!0.46!47.51!ARID4B;;chr4:124374..124410,+!p2@ZNF718!0.46!26.76!ZNF718;;chr19:20278012..20278034,+!p1@ZNF486!0.46!21.30!ZNF486;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!0.46!16.38!ZNF700;;chr9:3525968..3526016,-!p1@RFX3!0.46!14.75!RFX3;;chr19:12175535..12175554,+!p1@ZNF844!0.46!13.65!ZNF844;;chr19:20959098..20959117,+!p1@ZNF66P!0.46!10.38!ZNF66P;;chr1:149871114..149871134,+!p3@BOLA1!0.46!9.83!BOLA1;;chr10:97890024..97890064,+!p2@ZNF518A!0.46!6.55!ZNF518A;;chr15:50647347..50647366,-!p3@GABPB1!0.46!6.01!GABPB1;;chr16:89787973..89788001,+!p3@ZNF276!0.46!4.37!ZNF276;;chr17:36861735..36861755,+!p4@MLLT6!0.46!3.82!MLLT6;;chr6:12009042..12009092,+!p6@HIVEP1!0.46!2.73!HIVEP1;;chr15:31619119..31619131,+!p14@KLF13!0.46!2.18!KLF13;;chr7:104654623..104654669,+!p1@MLL5!0.45!68.81!MLL5;;chr4:467892..467963,-!p1@ABCA11P,p1@ZNF721!0.45!64.44!ZNF721;;chr1:14075903..14075940,+!p1@PRDM2!0.45!54.07!PRDM2;;chr7:152133059..152133102,-!p1@MLL3!0.45!40.41!MLL3;;chr10:38299546..38299686,+!p1@ZNF33A!0.45!36.59!ZNF33A;;chr19:57999101..57999158,+!p1@ZNF419!0.45!16.93!ZNF419;;chr16:30583017..30583064,-!p1@ZNF688!0.45!12.56!ZNF688;;chr19:21512202..21512225,-!p1@ZNF708!0.45!12.56!ZNF708;;chr2:174830564..174830605,-!p3@SP3!0.45!12.02!SP3;;chr19:56915668..56915732,+!p1@ZNF583!0.45!8.74!ZNF583;;chr19:37958285..37958317,-!p3@ZNF569!0.45!6.01!ZNF569;;chr19:38085633..38085706,-!p1@ZNF571!0.45!6.01!ZNF571;;chr7:104654690..104654704,+!p2@MLL5!0.45!4.37!MLL5;;chr19:56988677..56988729,-!p1@ZNF667!0.45!3.82!ZNF667;;chr16:29817399..29817425,+!p13@MAZ!0.45!3.82!MAZ;;chr2:185463247..185463263,+!p1@ZNF804A!0.45!3.82!ZNF804A;;chr3:33482052..33482116,-!p2@UBP1!0.45!3.28!UBP1;;chr2:192015750..192015793,-!p2@STAT4!0.45!2.73!STAT4;;chr13:74708269..74708291,-!p7@KLF12!0.45!2.73!KLF12;;chr8:41909496..41909512,-!p1@KAT6A!0.44!76.46!KAT6A;;chr1:53018743..53018777,-!p1@ZCCHC11!0.44!42.05!ZCCHC11;;chr19:20844368..20844407,-!p1@ZNF626!0.44!34.41!ZNF626;;chr19:37663572..37663630,-!p1@ZNF585A!0.44!28.40!ZNF585A;;chr6:44233252..44233296,-!p1@NFKBIE!0.44!24.03!NFKBIE;;chr17:47439437..47439533,-!p1@ZNF652!0.44!19.66!ZNF652;;chr19:36909528..36909581,-!p1@ZFP82!0.44!10.92!ZFP82;;chr3:44596679..44596726,+!p1@ZNF167!0.44!10.38!ZNF167;;chr19:12405645..12405685,-!p1@ZNF44!0.44!8.19!ZNF44;;chr19:19976634..19976677,+!p2@ZNF253!0.44!8.19!ZNF253;;chr6:12008986..12009016,+!p3@HIVEP1!0.44!7.10!HIVEP1;;chr4:87928307..87928321,+!p8@AFF1!0.44!4.92!AFF1;;chrX:107019163..107019179,-!p7@TSC22D3!0.44!2.18!TSC22D3;;chr12:57505121..57505179,-!p1@STAT6!0.43!95.57!STAT6;;chr19:36705998..36706021,+!p2@ZNF146!0.43!34.95!ZNF146;;chr1:22778337..22778356,+!p1@ZBTB40!0.43!29.49!ZBTB40;;chr12:498415..498492,-!p1@KDM5A!0.43!26.76!KDM5A;;chr14:90085458..90085557,-!p1@FOXN3!0.43!25.12!FOXN3;;chr19:53141584..53141625,-!p2@ZNF83!0.43!19.11!ZNF83;;chr19:52800410..52800454,+!p1@ZNF480!0.43!10.38!ZNF480;;chr3:44771092..44771160,+!p1@ZNF501!0.43!9.28!ZNF501;;chr19:37407212..37407280,+!p1@ZNF568!0.43!9.28!ZNF568;;chr19:23869970..23869991,-!p1@ZNF675!0.43!8.74!ZNF675;;chr19:44598498..44598529,+!p1@ZNF224!0.43!7.10!ZNF224;;chr14:65569101..65569119,-!p3@MAX!0.43!7.10!MAX;;chr6:106534230..106534254,+!p2@PRDM1!0.43!5.46!PRDM1;;chr9:32550839..32550962,-!p3@TOPORS!0.43!5.46!TOPORS;;chr19:40502938..40502987,+!p1@ZNF546!0.43!5.46!ZNF546;;chr19:53662295..53662319,-!p1@ZNF347!0.43!5.46!ZNF347;;chr19:44905759..44905797,-!p2@ZFP112,p2@ZNF285!0.43!4.92!ZNF285;;chr19:44331461..44331482,+!p3@ZNF283!0.43!3.28!ZNF283;;chr1:41157671..41157695,+!p6@NFYC!0.43!2.73!NFYC;;chrX:131624020..131624048,-!p9@MBNL3!0.43!2.18!MBNL3;;chr4:103422499..103422632,+!p1@NFKB1!0.42!50.24!NFKB1;;chr10:98592009..98592061,+!p1@C10orf12,p1@LCOR!0.42!33.86!LCOR;;chr1:40627038..40627071,+!p1@RLF!0.42!31.13!RLF;;chr19:58258202..58258226,+!p3@ZNF776!0.42!10.92!ZNF776;;chr19:53970970..53971021,+!p1@ZNF813!0.42!4.92!ZNF813;;chr17:36861675..36861697,+!p3@MLLT6!0.42!4.92!MLLT6;;chr19:21950332..21950356,-!p2@ZNF100!0.42!4.37!ZNF100;;chr4:38665753..38665757,+!p7@KLF3!0.42!3.28!KLF3;;chr4:81104985..81105005,+!p4@PRDM8!0.42!2.18!PRDM8;;chr2:113057501..113057529,+!p4@ZC3H6!0.42!1.64!ZC3H6;;chr2:60780516..60780526,-!p11@BCL11A!0.42!1.64!BCL11A;;chr2:97202991..97203043,+!p3@ARID5A!0.42!1.64!ARID5A;;chr3:107243213..107243223,+!p11@BBX!0.42!1.64!BBX;;chr3:71180051..71180085,-!p21@FOXP1!0.42!1.64!FOXP1;;chr3:71180088..71180107,-!p48@FOXP1!0.42!1.64!FOXP1;;chr4:149365827..149365870,-!p5@NR3C2!0.42!1.64!NR3C2;;chr14:75988831..75988847,+!p2@BATF!0.42!1.64!BATF;;chr15:31684663..31684717,+!p10@KLF13!0.42!1.64!KLF13;;chr15:90544182..90544195,+!p7@ZNF710!0.42!1.64!ZNF710;;chr17:36871943..36871947,+!p8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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000236;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988
 |ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12179.12194-129B7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12179.12194-129B7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12179.12194-129B7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12179.12194-129B7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.LQhCAGE/CD19%252b%2520B%2520Cells%2520%2528pluriselect%2529%252c%2520donor090309%252c%2520donation2.CNhs12179.12194-129B7.hg38.nobarcode.ctss.bed.gz
 |id=FF:12194-129B7
 |is_a=EFO:0002091;;FF:0000025;;FF:0000210
 |is_obsolete=
 |library_id=CNhs12179!RDhi10008
-|library_id_phase_based=1:CNhs12179
+|library_id_phase_based=2:CNhs12179
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12194
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12194
 |name=CD19+ B Cells (pluriselect), donor090309, donation2
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12179,LSID975,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12194-129B7;search_select_hide=table117:FF:12194-129B7
 }}

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FF:12194-129B7: Difference between revisions

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Latest revision as of 18:34, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0