FF:11917-125G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005705 | |DRA_sample_Accession=CAGE@SAMD00005705 | ||
|accession_numbers=CAGE;DRX008189;DRR009061;DRZ000486;DRZ001871 | |accession_numbers=CAGE;DRX008189;DRR009061;DRZ000486;DRZ001871;DRZ011836;DRZ013221 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | ||
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|def= | |def= | ||
|expression_enrichment_score=chr7:50343634..50343717,+!p2@IKZF1!1.82!65.22!IKZF1;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.12!GATA3;;chr2:192015701..192015743,-!p1@STAT4!1.62!54.99!STAT4;;chr10:8096631..8096660,+!p1@GATA3!1.61!48.08!GATA3;;chr3:18486354..18486377,-!p2@SATB1!1.56!43.94!SATB1;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.54!IKZF1;;chr17:1959369..1959388,+!p2@HIC1!1.52!82.91!HIC1;;chr20:50159198..50159299,-!p1@NFATC2!1.51!45.60!NFATC2;;chr2:231090433..231090469,+!p1@SP140!1.45!27.36!SP140;;chr6:391743..391759,+!p1@IRF4!1.44!26.81!IRF4;;chr2:192015750..192015793,-!p2@STAT4!1.43!34.82!STAT4;;chr1:25291475..25291511,-!p2@RUNX3!1.43!25.70!RUNX3;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.42!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.40!64.11!AKNA;;chr8:60031619..60031676,-!p1@TOX!1.40!51.40!TOX;;chr1:92951607..92951661,-!p1@GFI1!1.40!24.32!GFI1;;chr5:133450365..133450444,+!p1@TCF7!1.37!98.66!TCF7;;chr7:50343895..50343936,+!p5@IKZF1!1.34!20.73!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.33!26.81!BATF;;chr16:68119324..68119364,+!p1@NFATC3!1.32!86.50!NFATC3;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.34!KDM5D;;chr7:50348268..50348366,+!p4@IKZF1!1.29!18.52!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.28!17.96!ZBP1;;chr3:63953435..63953499,+!p1@ATXN7!1.22!15.75!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.54!BACH2;;chr14:99738138..99738163,-!p1@BCL11B!1.19!14.37!BCL11B;;chr10:8095593..8095625,+!p3@GATA3!1.18!16.58!GATA3;;chr4:109087445..109087463,-!p1@LEF1!1.17!13.82!LEF1;;chr4:109089901..109089930,-!p3@LEF1!1.17!13.82!LEF1;;chr3:71355163..71355209,-!p5@FOXP1!1.16!18.79!FOXP1;;chr5:133451294..133451310,+!p2@TCF7!1.16!13.54!TCF7;;chr19:19729477..19729542,-!p1@PBX4!1.14!27.36!PBX4;;chr20:56195525..56195556,-!p2@ZBP1!1.10!11.61!ZBP1;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.71!ELF1;;chr2:231090471..231090504,+!p2@SP140!0.99!8.84!SP140;;chr7:77428066..77428132,+!p2@PHTF2!0.97!55.27!PHTF2;;chr6:15401104..15401166,+!p5@JARID2!0.97!8.29!JARID2;;chr17:45810594..45810608,+!p1@TBX21!0.95!8.01!TBX21;;chr5:176738887..176738934,-!p1@MXD3!0.94!53.34!MXD3;;chr2:97202991..97203043,+!p3@ARID5A!0.94!7.74!ARID5A;;chr4:109090075..109090095,-!p2@LEF1!0.94!7.74!LEF1;;chr19:16435625..16435682,+!p1@KLF2!0.93!251.20!KLF2;;chr20:52226313..52226350,-!p3@ZNF217!0.93!7.46!ZNF217;;chr2:8822176..8822196,+!p1@ID2!0.92!1067.26!ID2;;chr3:18466787..18466839,-!p1@SATB1!0.92!33.71!SATB1;;chr1:25256756..25256774,-!p1@RUNX3!0.91!13.82!RUNX3;;chr17:46621146..46621180,-!p10@HOXB2!0.91!7.19!HOXB2;;chr3:71007344..71007348,-!p6@FOXP1!0.90!29.29!FOXP1;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.98!RUNX1;;chr2:214015343..214015366,-!p3@IKZF2!0.90!6.91!IKZF2;;chr3:18480217..18480239,-!p3@SATB1!0.90!6.91!SATB1;;chr11:47236584..47236679,+!p1@DDB2!0.89!77.10!DDB2;;chr5:131826457..131826514,-!p1@IRF1!0.88!274.14!IRF1;;chr16:79634595..79634620,-!p2@MAF!0.88!12.44!MAF;;chr12:56415246..56415286,+!p2@IKZF4!0.88!6.63!IKZF4;;chr1:92949331..92949377,-!p2@GFI1!0.87!6.36!GFI1;;chr4:109088089..109088101,-!p11@LEF1!0.87!6.36!LEF1;;chr11:128392085..128392232,-!p1@ETS1!0.85!218.87!ETS1;;chr10:35484053..35484076,+!p1@CREM!0.85!16.03!CREM;;chr1:23857698..23857733,-!p1@E2F2!0.85!11.61!E2F2;;chr3:71542684..71542720,-!p18@FOXP1!0.85!6.08!FOXP1;;chr7:137620650..137620677,-!p3@CREB3L2!0.85!6.08!CREB3L2;;chr8:60031563..60031574,-!p7@TOX!0.85!6.08!TOX;;chr14:99738059..99738086,-!p2@BCL11B!0.85!6.08!BCL11B;;chrX:49121165..49121179,-!p1@FOXP3!0.85!6.08!FOXP3;;chrX:134477924..134477988,-!p1@ZNF75D!0.84!23.77!ZNF75D;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.22!RUNX2;;chr11:128563948..128564003,+!p1@FLI1!0.83!73.79!FLI1;;chr16:79634624..79634642,-!p1@MAF!0.83!24.04!MAF;;chr6:106546808..106546833,+!p3@PRDM1!0.83!7.46!PRDM1;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.80!ZFY;;chr5:321810..321877,+!p1@AHRR!0.82!18.79!AHRR;;chr16:89787937..89787971,+!p1@ZNF276!0.82!15.48!ZNF276;;chr17:46621101..46621143,-!p7@HOXB2!0.82!7.74!HOXB2;;chr16:88752889..88752921,-!p1@SNAI3!0.82!6.63!SNAI3;;chr11:113930425..113930471,+!p1@ZBTB16!0.81!8.01!ZBTB16;;chr3:18487057..18487105,-!p4@SATB1!0.80!5.25!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.80!5.25!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!0.80!5.25!IKZF3;;chr7:137620684..137620711,-!p4@CREB3L2!0.80!5.25!CREB3L2;;chr6:15249128..15249177,+!p4@JARID2!0.79!9.67!JARID2;;chr7:128577972..128578047,+!p1@IRF5!0.79!8.57!IRF5;;chr7:50343864..50343888,+!p7@IKZF1!0.78!4.97!IKZF1;;chr21:36421147..36421193,-!p10@RUNX1!0.78!4.97!RUNX1;;chr17:56565257..56565283,-!p2@HSF5!0.78!4.97!HSF5;;chr3:71179699..71179744,-!p2@FOXP1!0.76!38.97!FOXP1;;chr14:64970670..64970712,-!p3@ZBTB25!0.76!11.05!ZBTB25;;chr4:109089996..109090012,-!p5@LEF1!0.76!4.70!LEF1;;chr14:99737850..99737852,-!p3@BCL11B!0.76!4.70!BCL11B;;chr15:60884706..60884743,-!p1@RORA!0.74!25.70!RORA;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.57!IKZF2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!34.82!STAT5A;;chr14:64971288..64971316,-!p2@ZBTB25!0.73!14.92!ZBTB25;;chr2:148778973..148779035,+!p3@MBD5!0.73!12.44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2.49!ZNF644;;chr1:211433151..211433191,+!p5@RCOR3!0.20!2.21!RCOR3;;chr19:45004584..45004601,-!p2@ZNF180!0.20!1.93!ZNF180;;chr1:249153114..249153175,-!p3@ZNF692!0.20!1.93!ZNF692;;chr9:128509635..128509658,+!p2@PBX3!0.20!1.93!PBX3;;chr8:123793959..123793977,+!p4@ZHX2!0.20!1.93!ZHX2;;chr3:150126440..150126455,+!p9@TSC22D2!0.20!1.38!TSC22D2;;chr3:71632743..71632756,-!p16@FOXP1!0.20!1.38!FOXP1;;chr16:30569604..30569629,-!p3@ZNF764!0.20!1.38!ZNF764;;chr6:15249097..15249115,+!p7@JARID2!0.20!1.11!JARID2;;chr6:157099387..157099403,+!p8@ARID1B!0.20!1.11!ARID1B;;chr7:27835758..27835772,+!p3@TAX1BP1!0.20!1.11!TAX1BP1;;chrX:129402754..129402766,-!p3@ZNF280C!0.20!1.11!ZNF280C;;chr17:38497662..38497713,+!p4@RARA!0.20!0.83!RARA;;chr19:19779686..19779697,+!p3@ZNF101!0.20!0.83!ZNF101;;chr19:24269971..24269980,+!p6@ZNF254!0.20!0.83!ZNF254;;chr10:35416125..35416138,+!p10@CREM!0.20!0.83!CREM;;chr7:127032296..127032317,-!p4@ZNF800!0.20!0.83!ZNF800;;chr2:70314601..70314622,+!p1@PCBP1!0.19!325.54!PCBP1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.19!80.14!PCBP4;;chr17:7590797..7590815,-!p1@TP53!0.19!60.24!TP53;;chr19:10305581..10305646,-!p1@DNMT1!0.19!48.36!DNMT1;;chr17:56065540..56065627,-!p1@VEZF1!0.19!43.11!VEZF1;;chr8:41909496..41909512,-!p1@KAT6A!0.19!41.73!KAT6A;;chr1:22778337..22778356,+!p1@ZBTB40!0.19!16.30!ZBTB40;;chr20:62601243..62601291,-!p1@ZNF512B!0.19!13.26!ZNF512B;;chr12:51566849..51566927,-!p1@TFCP2!0.19!11.33!TFCP2;;chr1:8877692..8877732,-!p1@RERE!0.19!10.78!RERE;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.19!10.22!ZNF319;;chr17:33288552..33288598,+!p1@ZNF830!0.19!10.22!ZNF830;;chr9:99540335..99540388,-!p1@ZNF510!0.19!9.67!ZNF510;;chr7:148936732..148936761,+!p1@ZNF212!0.19!9.12!ZNF212;;chr9:125667518..125667588,-!p1@RC3H2!0.19!8.57!RC3H2;;chr8:135725249..135725292,-!p1@ZFAT!0.19!8.29!ZFAT;;chr19:57831829..57831890,+!p1@ZNF543!0.19!8.01!ZNF543;;chr4:2263861..2263883,-!p2@MXD4!0.19!7.74!MXD4;;chr2:178257401..178257432,-!p4@NFE2L2!0.19!7.19!NFE2L2;;chr16:3285144..3285191,-!p1@ZNF200!0.19!6.08!ZNF200;;chr3:71179746..71179783,-!p7@FOXP1!0.19!3.87!FOXP1;;chr1:8585945..8586056,-!p3@RERE!0.19!3.87!RERE;;chr8:28748099..28748141,+!p2@HMBOX1!0.19!3.59!HMBOX1;;chr6:109804367..109804402,-!p2@ZBTB24!0.19!3.32!ZBTB24;;chr1:27022839..27022890,+!p3@ARID1A!0.19!3.32!ARID1A;;chr1:78444714..78444725,-!p3@FUBP1!0.19!3.04!FUBP1;;chr19:12721790..12721810,+!p2@ZNF791!0.19!3.04!ZNF791;;chr19:37862054..37862110,+!p1@ZNF527!0.19!3.04!ZNF527;;chr16:3185125..3185173,+!p1@ZNF213!0.19!2.76!ZNF213;;chr2:174830043..174830071,-!p6@SP3!0.19!2.21!SP3;;chr19:57752200..57752254,+!p3@ZNF805!0.19!1.93!ZNF805;;chr6:42419043..42419087,-!p2@TRERF1!0.19!1.93!TRERF1;;chr3:178789648..178789661,-!p4@ZMAT3!0.19!1.38!ZMAT3;;chr20:42143136..42143161,+!p3@L3MBTL1!0.19!1.38!L3MBTL;;chr12:8185346..8185360,+!p2@FOXJ2!0.19!1.38!FOXJ2;;chr7:21467746..21467758,+!p4@SP4!0.19!1.11!SP4;;chr9:99180662..99180690,-!p2@ZNF367!0.19!1.11!ZNF367;;chr19:18391652..18391669,-!p8@JUND!0.19!1.11!JUND;;chr1:158979680..158979683,+!p9@IFI16!0.19!1.11!IFI16;;chr1:45805735..45805743,+!p7@TOE1!0.19!0.83!TOE1;;chr11:130184623..130184634,-!p6@ZBTB44!0.19!0.83!ZBTB44;;chr13:41556186..41556208,-!p12@ELF1!0.19!0.83!ELF1;;chr10:104154415..104154434,+!p5@NFKB2!0.19!0.55!NFKB2;;chr10:135121763..135121783,+!p5@ZNF511!0.19!0.55!ZNF511;;chr10:35416172..35416184,+!p13@CREM!0.19!0.55!CREM;;chr11:128391908..128391913,-!p18@ETS1!0.19!0.55!ETS1;;chr11:128392258..128392264,-!p7@ETS1!0.19!0.55!ETS1;;chr12:103352277..103352324,+!p2@ASCL1!0.19!0.55!ASCL1;;chr12:48277143..48277154,-!p10@VDR!0.19!0.55!VDR;;chr12:69753583..69753598,+!p2@YEATS4!0.19!0.55!YEATS4;;chr12:72056897..72056908,+!p12@THAP2!0.19!0.55!THAP2;;chr12:95467222..95467233,-!p3@NR2C1!0.19!0.55!NR2C1;;chr13:41593392..41593403,-!p7@ELF1!0.19!0.55!ELF1;; | |expression_enrichment_score=chr7:50343634..50343717,+!p2@IKZF1!1.82!65.22!IKZF1;;chr10:8096772..8096787,+!p2@GATA3!1.65!51.12!GATA3;;chr2:192015701..192015743,-!p1@STAT4!1.62!54.99!STAT4;;chr10:8096631..8096660,+!p1@GATA3!1.61!48.08!GATA3;;chr3:18486354..18486377,-!p2@SATB1!1.56!43.94!SATB1;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.54!IKZF1;;chr17:1959369..1959388,+!p2@HIC1!1.52!82.91!HIC1;;chr20:50159198..50159299,-!p1@NFATC2!1.51!45.60!NFATC2;;chr2:231090433..231090469,+!p1@SP140!1.45!27.36!SP140;;chr6:391743..391759,+!p1@IRF4!1.44!26.81!IRF4;;chr2:192015750..192015793,-!p2@STAT4!1.43!34.82!STAT4;;chr1:25291475..25291511,-!p2@RUNX3!1.43!25.70!RUNX3;;chr7:50344251..50344288,+!p3@IKZF1!1.42!25.42!IKZF1;;chr9:117150254..117150271,-!p1@AKNA!1.40!64.11!AKNA;;chr8:60031619..60031676,-!p1@TOX!1.40!51.40!TOX;;chr1:92951607..92951661,-!p1@GFI1!1.40!24.32!GFI1;;chr5:133450365..133450444,+!p1@TCF7!1.37!98.66!TCF7;;chr7:50343895..50343936,+!p5@IKZF1!1.34!20.73!IKZF1;;chr14:75988771..75988826,+!p1@BATF!1.33!26.81!BATF;;chr16:68119324..68119364,+!p1@NFATC3!1.32!86.50!NFATC3;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.34!KDM5D;;chr7:50348268..50348366,+!p4@IKZF1!1.29!18.52!IKZF1;;chr20:56195474..56195506,-!p1@ZBP1!1.28!17.96!ZBP1;;chr3:63953435..63953499,+!p1@ATXN7!1.22!15.75!ATXN7;;chr6:91006518..91006570,-!p1@BACH2!1.21!34.54!BACH2;;chr14:99738138..99738163,-!p1@BCL11B!1.19!14.37!BCL11B;;chr10:8095593..8095625,+!p3@GATA3!1.18!16.58!GATA3;;chr4:109087445..109087463,-!p1@LEF1!1.17!13.82!LEF1;;chr4:109089901..109089930,-!p3@LEF1!1.17!13.82!LEF1;;chr3:71355163..71355209,-!p5@FOXP1!1.16!18.79!FOXP1;;chr5:133451294..133451310,+!p2@TCF7!1.16!13.54!TCF7;;chr19:19729477..19729542,-!p1@PBX4!1.14!27.36!PBX4;;chr20:56195525..56195556,-!p2@ZBP1!1.10!11.61!ZBP1;;chr13:41593425..41593480,-!p1@ELF1!1.06!67.71!ELF1;;chr2:231090471..231090504,+!p2@SP140!0.99!8.84!SP140;;chr7:77428066..77428132,+!p2@PHTF2!0.97!55.27!PHTF2;;chr6:15401104..15401166,+!p5@JARID2!0.97!8.29!JARID2;;chr17:45810594..45810608,+!p1@TBX21!0.95!8.01!TBX21;;chr5:176738887..176738934,-!p1@MXD3!0.94!53.34!MXD3;;chr2:97202991..97203043,+!p3@ARID5A!0.94!7.74!ARID5A;;chr4:109090075..109090095,-!p2@LEF1!0.94!7.74!LEF1;;chr19:16435625..16435682,+!p1@KLF2!0.93!251.20!KLF2;;chr20:52226313..52226350,-!p3@ZNF217!0.93!7.46!ZNF217;;chr2:8822176..8822196,+!p1@ID2!0.92!1067.26!ID2;;chr3:18466787..18466839,-!p1@SATB1!0.92!33.71!SATB1;;chr1:25256756..25256774,-!p1@RUNX3!0.91!13.82!RUNX3;;chr17:46621146..46621180,-!p10@HOXB2!0.91!7.19!HOXB2;;chr3:71007344..71007348,-!p6@FOXP1!0.90!29.29!FOXP1;;chr21:36421535..36421610,-!p2@RUNX1!0.90!25.98!RUNX1;;chr2:214015343..214015366,-!p3@IKZF2!0.90!6.91!IKZF2;;chr3:18480217..18480239,-!p3@SATB1!0.90!6.91!SATB1;;chr11:47236584..47236679,+!p1@DDB2!0.89!77.10!DDB2;;chr5:131826457..131826514,-!p1@IRF1!0.88!274.14!IRF1;;chr16:79634595..79634620,-!p2@MAF!0.88!12.44!MAF;;chr12:56415246..56415286,+!p2@IKZF4!0.88!6.63!IKZF4;;chr1:92949331..92949377,-!p2@GFI1!0.87!6.36!GFI1;;chr4:109088089..109088101,-!p11@LEF1!0.87!6.36!LEF1;;chr11:128392085..128392232,-!p1@ETS1!0.85!218.87!ETS1;;chr10:35484053..35484076,+!p1@CREM!0.85!16.03!CREM;;chr1:23857698..23857733,-!p1@E2F2!0.85!11.61!E2F2;;chr3:71542684..71542720,-!p18@FOXP1!0.85!6.08!FOXP1;;chr7:137620650..137620677,-!p3@CREB3L2!0.85!6.08!CREB3L2;;chr8:60031563..60031574,-!p7@TOX!0.85!6.08!TOX;;chr14:99738059..99738086,-!p2@BCL11B!0.85!6.08!BCL11B;;chrX:49121165..49121179,-!p1@FOXP3!0.85!6.08!FOXP3;;chrX:134477924..134477988,-!p1@ZNF75D!0.84!23.77!ZNF75D;;chr6:45390269..45390298,+!p5@RUNX2!0.84!10.22!RUNX2;;chr11:128563948..128564003,+!p1@FLI1!0.83!73.79!FLI1;;chr16:79634624..79634642,-!p1@MAF!0.83!24.04!MAF;;chr6:106546808..106546833,+!p3@PRDM1!0.83!7.46!PRDM1;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.80!ZFY;;chr5:321810..321877,+!p1@AHRR!0.82!18.79!AHRR;;chr16:89787937..89787971,+!p1@ZNF276!0.82!15.48!ZNF276;;chr17:46621101..46621143,-!p7@HOXB2!0.82!7.74!HOXB2;;chr16:88752889..88752921,-!p1@SNAI3!0.82!6.63!SNAI3;;chr11:113930425..113930471,+!p1@ZBTB16!0.81!8.01!ZBTB16;;chr3:18487057..18487105,-!p4@SATB1!0.80!5.25!SATB1;;chr4:109088940..109089037,-!p4@LEF1!0.80!5.25!LEF1;;chr17:38020392..38020477,-!p1@IKZF3!0.80!5.25!IKZF3;;chr7:137620684..137620711,-!p4@CREB3L2!0.80!5.25!CREB3L2;;chr6:15249128..15249177,+!p4@JARID2!0.79!9.67!JARID2;;chr7:128577972..128578047,+!p1@IRF5!0.79!8.57!IRF5;;chr7:50343864..50343888,+!p7@IKZF1!0.78!4.97!IKZF1;;chr21:36421147..36421193,-!p10@RUNX1!0.78!4.97!RUNX1;;chr17:56565257..56565283,-!p2@HSF5!0.78!4.97!HSF5;;chr3:71179699..71179744,-!p2@FOXP1!0.76!38.97!FOXP1;;chr14:64970670..64970712,-!p3@ZBTB25!0.76!11.05!ZBTB25;;chr4:109089996..109090012,-!p5@LEF1!0.76!4.70!LEF1;;chr14:99737850..99737852,-!p3@BCL11B!0.76!4.70!BCL11B;;chr15:60884706..60884743,-!p1@RORA!0.74!25.70!RORA;;chr2:214015111..214015179,-!p1@IKZF2!0.74!8.57!IKZF2;;chr17:40440481..40440550,+!p1@STAT5A!0.73!34.82!STAT5A;;chr14:64971288..64971316,-!p2@ZBTB25!0.73!14.92!ZBTB25;;chr2:148778973..148779035,+!p3@MBD5!0.73!12.44!MBD5;;chr3:27763807..27763822,-!p1@EOMES!0.73!4.42!EOMES;;chr10:8097321..8097348,+!p4@GATA3!0.73!4.42!GATA3;;chr9:20622444..20622468,-!p2@MLLT3!0.72!15.20!MLLT3;;chr19:19779619..19779670,+!p1@ZNF101!0.72!12.99!ZNF101;;chr8:71316428..71316459,-!p2@NCOA2!0.72!7.46!NCOA2;;chr2:231084659..231084721,-!p1@SP110!0.71!110.26!SP110;;chr4:109089290..109089320,-!p14@LEF1!0.71!4.15!LEF1;;chr5:133451347..133451358,+!p3@TCF7!0.71!4.15!TCF7;;chr1:158979686..158979745,+!p1@IFI16!0.70!151.16!IFI16;;chr14:90085458..90085557,-!p1@FOXN3!0.70!47.53!FOXN3;;chr9:20622478..20622525,-!p1@MLLT3!0.70!36.20!MLLT3;;chr13:41240717..41240735,-!p2@FOXO1!0.70!31.23!FOXO1;;chr10:104154246..104154347,+!p3@NFKB2!0.70!27.64!NFKB2;;chr4:185395633..185395651,-!p2@IRF2!0.70!6.91!IRF2;;chr4:57522166..57522260,-!p2@HOPX!0.70!4.70!HOPX;;chr10:35484804..35484902,+!p2@CREM!0.69!16.86!CREM;;chr7:21467802..21467840,+!p3@SP4!0.69!8.84!SP4;;chr20:32274150..32274166,-!p2@E2F1!0.69!7.74!E2F1;;chr3:18466660..18466676,-!p5@SATB1!0.69!4.70!SATB1;;chr6:152011654..152011682,+!p1@ESR1!0.69!3.87!ESR1;;chr14:75988831..75988847,+!p2@BATF!0.69!3.87!BATF;;chr12:56415287..56415300,+!p5@IKZF4!0.69!3.87!IKZF4;;chr19:52674696..52674758,-!p1@ZNF836!0.68!12.44!ZNF836;;chr9:20621927..20621996,-!p3@MLLT3!0.68!6.91!MLLT3;;chr19:12405606..12405629,-!p2@ZNF44!0.66!7.74!ZNF44;;chr12:432372..432377,-!p3@KDM5A!0.66!6.08!KDM5A;;chr1:3569072..3569093,+!p1@TP73!0.66!3.59!TP73;;chr6:91006503..91006517,-!p3@BACH2!0.66!3.59!BACH2;;chr2:242556900..242556916,-!p6@THAP4!0.66!3.59!THAP4;;chr4:57522598..57522664,-!p3@HOPX!0.66!3.59!HOPX;;chr13:41240737..41240787,-!p1@FOXO1!0.65!48.64!FOXO1;;chr12:53614115..53614154,-!p1@RARG!0.65!21.56!RARG;;chr4:185395590..185395627,-!p3@IRF2!0.65!4.42!IRF2;;chr2:208394817..208394834,+!p3@CREB1!0.64!15.48!CREB1;;chr16:68118689..68118733,+!p3@NFATC3!0.64!9.67!NFATC3;;chr10:35415951..35415975,+!p8@CREM!0.64!4.97!CREM;;chr4:185395191..185395226,-!p4@IRF2!0.64!4.97!IRF2;;chr11:19263160..19263176,-!p1@E2F8!0.64!4.15!E2F8;;chr6:106546786..106546802,+!p6@PRDM1!0.64!3.32!PRDM1;;chr2:214014959..214015006,-!p4@IKZF2!0.64!3.32!IKZF2;;chr4:109086281..109086319,-!p9@LEF1!0.64!3.32!LEF1;;chr4:57522674..57522699,-!p5@HOPX!0.64!3.32!HOPX;;chr1:149858461..149858479,+!p1@BOLA1!0.63!1529.04!BOLA1;;chr19:9546177..9546224,-!p1@ZNF266!0.63!27.08!ZNF266;;chr17:46622205..46622218,-!p3@HOXB2!0.63!3.87!HOXB2;;chr17:61920280..61920343,-!p2@SMARCD2!0.62!36.20!SMARCD2;;chr14:74226961..74227020,-!p1@C14orf43!0.62!24.87!C14orf43;;chr11:128392273..128392308,-!p2@ETS1!0.62!15.75!ETS1;;chr4:103422499..103422632,+!p1@NFKB1!0.61!77.38!NFKB1;;chr11:67007548..67007610,+!p3@KDM2A!0.61!27.08!KDM2A;;chr17:1958388..1958404,+!p1@HIC1!0.61!23.21!HIC1;;chr6:143266297..143266356,-!p1@HIVEP2!0.61!17.69!HIVEP2;;chr11:113930291..113930339,+!p2@ZBTB16!0.61!5.53!ZBTB16;;chr8:60031534..60031553,-!p8@TOX!0.61!3.04!TOX;;chr3:18465604..18465618,-!p9@SATB1!0.61!3.04!SATB1;;chr4:109088130..109088163,-!p13@LEF1!0.61!3.04!LEF1;;chr21:36421347..36421380,-!p8@RUNX1!0.61!3.04!RUNX1;;chr15:31619326..31619390,+!p2@KLF13!0.60!41.73!KLF13;;chr6:20402102..20402152,+!p1@E2F3!0.60!14.37!E2F3;;chr17:46621937..46621966,-!p2@HOXB2!0.60!9.40!HOXB2;;chr13:74708475..74708499,-!p5@KLF12!0.60!7.74!KLF12;;chr14:73360799..73360817,-!p1@DPF3!0.59!11.88!DPF3;;chr10:35416142..35416169,+!p3@CREM!0.59!8.84!CREM;;chr16:68119440..68119480,+!p4@NFATC3!0.59!5.25!NFATC3;;chr6:135502501..135502546,+!p1@MYB!0.59!3.59!MYB;;chr15:31619013..31619095,+!p1@KLF13!0.58!81.25!KLF13;;chr2:97202480..97202499,+!p1@ARID5A!0.58!35.10!ARID5A;;chr15:74833584..74833626,+!p1@ARID3B!0.58!7.46!ARID3B;;chr19:35455110..35455149,-!p1@ZNF792!0.58!6.08!ZNF792;;chr2:242556880..242556899,-!p5@THAP4!0.58!2.76!THAP4;;chr3:71542747..71542766,-!p34@FOXP1!0.58!2.76!FOXP1;;chr7:50344144..50344157,+!p6@IKZF1!0.58!2.76!IKZF1;;chrY:21906761..21906810,-!p2@KDM5D!0.58!2.76!KDM5D;;chr1:249132410..249132456,+!p1@ZNF672!0.57!24.87!ZNF672;;chr2:238600933..238600985,+!p3@LRRFIP1!0.57!17.96!LRRFIP1;;chr16:89787973..89788001,+!p3@ZNF276!0.57!5.80!ZNF276;;chr12:46123273..46123329,+!p3@ARID2!0.57!5.25!ARID2;;chr9:86593238..86593252,-!p3@HNRNPK!0.57!4.42!HNRPK;;chr3:187463179..187463201,-!p2@BCL6!0.56!12.99!BCL6;;chrX:101186981..101187030,-!p1@ZMAT1!0.56!10.22!ZMAT1;;chr14:65569101..65569119,-!p3@MAX!0.56!9.95!MAX;;chr16:8962544..8962584,-!p2@CARHSP1!0.56!6.91!CARHSP1;;chr1:211432887..211432903,+!p4@RCOR3!0.56!6.91!RCOR3;;chr7:99156393..99156433,+!p6@ZNF655!0.56!6.91!ZNF655;;chr20:44600199..44600219,-!p3@ZNF335!0.56!3.87!ZNF335;;chr6:31126291..31126399,+!p1@TCF19!0.55!30.12!TCF19;;chr16:71918033..71918101,-!p1@ZNF821!0.55!11.61!ZNF821;;chr18:77155922..77155939,+!p1@NFATC1!0.55!8.29!NFATC1;;chr15:90544532..90544563,+!p1@ZNF710!0.55!5.80!ZNF710;;chr6:45390300..45390335,+!p4@RUNX2!0.55!4.42!RUNX2;;chr9:32550965..32551031,-!p4@TOPORS!0.55!4.42!TOPORS;;chr6:91006575..91006602,-!p2@BACH2!0.55!4.15!BACH2;;chr19:49140609..49140643,-!p1@DBP!0.54!17.41!DBP;;chr19:56111680..56111716,+!p1@ZNF524!0.54!11.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2.49!ZNF644;;chr1:211433151..211433191,+!p5@RCOR3!0.20!2.21!RCOR3;;chr19:45004584..45004601,-!p2@ZNF180!0.20!1.93!ZNF180;;chr1:249153114..249153175,-!p3@ZNF692!0.20!1.93!ZNF692;;chr9:128509635..128509658,+!p2@PBX3!0.20!1.93!PBX3;;chr8:123793959..123793977,+!p4@ZHX2!0.20!1.93!ZHX2;;chr3:150126440..150126455,+!p9@TSC22D2!0.20!1.38!TSC22D2;;chr3:71632743..71632756,-!p16@FOXP1!0.20!1.38!FOXP1;;chr16:30569604..30569629,-!p3@ZNF764!0.20!1.38!ZNF764;;chr6:15249097..15249115,+!p7@JARID2!0.20!1.11!JARID2;;chr6:157099387..157099403,+!p8@ARID1B!0.20!1.11!ARID1B;;chr7:27835758..27835772,+!p3@TAX1BP1!0.20!1.11!TAX1BP1;;chrX:129402754..129402766,-!p3@ZNF280C!0.20!1.11!ZNF280C;;chr17:38497662..38497713,+!p4@RARA!0.20!0.83!RARA;;chr19:19779686..19779697,+!p3@ZNF101!0.20!0.83!ZNF101;;chr19:24269971..24269980,+!p6@ZNF254!0.20!0.83!ZNF254;;chr10:35416125..35416138,+!p10@CREM!0.20!0.83!CREM;;chr7:127032296..127032317,-!p4@ZNF800!0.20!0.83!ZNF800;;chr2:70314601..70314622,+!p1@PCBP1!0.19!325.54!PCBP1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.19!80.14!PCBP4;;chr17:7590797..7590815,-!p1@TP53!0.19!60.24!TP53;;chr19:10305581..10305646,-!p1@DNMT1!0.19!48.36!DNMT1;;chr17:56065540..56065627,-!p1@VEZF1!0.19!43.11!VEZF1;;chr8:41909496..41909512,-!p1@KAT6A!0.19!41.73!KAT6A;;chr1:22778337..22778356,+!p1@ZBTB40!0.19!16.30!ZBTB40;;chr20:62601243..62601291,-!p1@ZNF512B!0.19!13.26!ZNF512B;;chr12:51566849..51566927,-!p1@TFCP2!0.19!11.33!TFCP2;;chr1:8877692..8877732,-!p1@RERE!0.19!10.78!RERE;;chr16:58034520..58034622,-!p@chr16:58034520..58034622,-!0.19!10.22!ZNF319;;chr17:33288552..33288598,+!p1@ZNF830!0.19!10.22!ZNF830;;chr9:99540335..99540388,-!p1@ZNF510!0.19!9.67!ZNF510;;chr7:148936732..148936761,+!p1@ZNF212!0.19!9.12!ZNF212;;chr9:125667518..125667588,-!p1@RC3H2!0.19!8.57!RC3H2;;chr8:135725249..135725292,-!p1@ZFAT!0.19!8.29!ZFAT;;chr19:57831829..57831890,+!p1@ZNF543!0.19!8.01!ZNF543;;chr4:2263861..2263883,-!p2@MXD4!0.19!7.74!MXD4;;chr2:178257401..178257432,-!p4@NFE2L2!0.19!7.19!NFE2L2;;chr16:3285144..3285191,-!p1@ZNF200!0.19!6.08!ZNF200;;chr3:71179746..71179783,-!p7@FOXP1!0.19!3.87!FOXP1;;chr1:8585945..8586056,-!p3@RERE!0.19!3.87!RERE;;chr8:28748099..28748141,+!p2@HMBOX1!0.19!3.59!HMBOX1;;chr6:109804367..109804402,-!p2@ZBTB24!0.19!3.32!ZBTB24;;chr1:27022839..27022890,+!p3@ARID1A!0.19!3.32!ARID1A;;chr1:78444714..78444725,-!p3@FUBP1!0.19!3.04!FUBP1;;chr19:12721790..12721810,+!p2@ZNF791!0.19!3.04!ZNF791;;chr19:37862054..37862110,+!p1@ZNF527!0.19!3.04!ZNF527;;chr16:3185125..3185173,+!p1@ZNF213!0.19!2.76!ZNF213;;chr2:174830043..174830071,-!p6@SP3!0.19!2.21!SP3;;chr19:57752200..57752254,+!p3@ZNF805!0.19!1.93!ZNF805;;chr6:42419043..42419087,-!p2@TRERF1!0.19!1.93!TRERF1;;chr3:178789648..178789661,-!p4@ZMAT3!0.19!1.38!ZMAT3;;chr20:42143136..42143161,+!p3@L3MBTL1!0.19!1.38!L3MBTL;;chr12:8185346..8185360,+!p2@FOXJ2!0.19!1.38!FOXJ2;;chr7:21467746..21467758,+!p4@SP4!0.19!1.11!SP4;;chr9:99180662..99180690,-!p2@ZNF367!0.19!1.11!ZNF367;;chr19:18391652..18391669,-!p8@JUND!0.19!1.11!JUND;;chr1:158979680..158979683,+!p9@IFI16!0.19!1.11!IFI16;;chr1:45805735..45805743,+!p7@TOE1!0.19!0.83!TOE1;;chr11:130184623..130184634,-!p6@ZBTB44!0.19!0.83!ZBTB44;;chr13:41556186..41556208,-!p12@ELF1!0.19!0.83!ELF1;;chr10:104154415..104154434,+!p5@NFKB2!0.19!0.55!NFKB2;;chr10:135121763..135121783,+!p5@ZNF511!0.19!0.55!ZNF511;;chr10:35416172..35416184,+!p13@CREM!0.19!0.55!CREM;;chr11:128391908..128391913,-!p18@ETS1!0.19!0.55!ETS1;;chr11:128392258..128392264,-!p7@ETS1!0.19!0.55!ETS1;;chr12:103352277..103352324,+!p2@ASCL1!0.19!0.55!ASCL1;;chr12:48277143..48277154,-!p10@VDR!0.19!0.55!VDR;;chr12:69753583..69753598,+!p2@YEATS4!0.19!0.55!YEATS4;;chr12:72056897..72056908,+!p12@THAP2!0.19!0.55!THAP2;;chr12:95467222..95467233,-!p3@NR2C1!0.19!0.55!NR2C1;;chr13:41593392..41593403,-!p7@ELF1!0.19!0.55!ELF1;; | ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000084;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000542;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000624;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000789;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 40: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD4%252bCD25-CD45RA%252b%2520naive%2520conventional%2520T%2520cells%2520expanded%252c%2520donor3.CNhs13814.11917-125G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11917-125G9 | |id=FF:11917-125G9 | ||
|is_a=EFO:0002091;;FF:0000002;;FF:0000210 | |is_a=EFO:0002091;;FF:0000002;;FF:0000210 | ||
Line 45: | Line 51: | ||
|library_id=CNhs13814 | |library_id=CNhs13814 | ||
|library_id_phase_based=2:CNhs13814 | |library_id_phase_based=2:CNhs13814 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11917 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11917 | |||
|name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3 | |name=CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3 | ||
|namespace= | |namespace= | ||
Line 52: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 89: | Line 100: | ||
|top_motifs=CDX1,2,4:3.11001094298;PAX4:2.24567056145;ZBTB16:2.06882886046;ELF1,2,4:1.99669613662;FOXP1:1.98069459248;IKZF2:1.97929463858;PAX3,7:1.83143189526;PITX1..3:1.81613952657;RUNX1..3:1.74351701807;NKX6-1,2:1.71357003498;TLX2:1.49197283798;POU1F1:1.43563262123;ETS1,2:1.39867365457;STAT1,3:1.2723543365;DMAP1_NCOR{1,2}_SMARC:1.27220492024;PDX1:1.15120933888;SPI1:1.14044712124;POU2F1..3:1.13756097294;TOPORS:1.07767323404;NKX3-1:1.02916555776;IRF1,2:1.01044144149;E2F1..5:0.992994841053;ELK1,4_GABP{A,B1}:0.979362537235;SPZ1:0.954752207834;PBX1:0.947806144289;NKX2-2,8:0.904170133495;RORA:0.87171974374;NKX2-1,4:0.845062640551;SPIB:0.838072080264;BREu{core}:0.742175412985;GATA6:0.710304527092;FOXO1,3,4:0.6554146712;YY1:0.646273417029;HOX{A6,A7,B6,B7}:0.630240929396;NANOG{mouse}:0.62289444935;TGIF1:0.605078344644;NFY{A,B,C}:0.562389491849;FOX{F1,F2,J1}:0.472325442893;ALX1:0.456495635592;BPTF:0.453554675956;AIRE:0.452055307798;FOX{I1,J2}:0.386005280518;LEF1_TCF7_TCF7L1,2:0.385954286243;FOX{D1,D2}:0.37008928713;FOXD3:0.336179469647;IRF7:0.328184768762;SOX5:0.3187559866;T:0.311811686534;RXRA_VDR{dimer}:0.25099675304;SNAI1..3:0.245135520067;OCT4_SOX2{dimer}:0.238137765252;CRX:0.198261457519;PAX6:0.193503691512;CREB1:0.180382742625;NFKB1_REL_RELA:0.180113713963;ZEB1:0.172584943493;MYOD1:0.136496045273;ATF5_CREB3:0.127950348461;MYB:0.109876270095;LMO2:0.0977499222588;STAT2,4,6:0.0890508075616;GFI1:0.0850977168369;POU3F1..4:0.0717969268294;NR5A1,2:0.061168449013;ATF6:0.0522310474888;FOXN1:0.0503205885551;NRF1:0.0453360708909;HAND1,2:0.0281572156595;PAX2:-0.00594804360111;FOXQ1:-0.0183270777757;HES1:-0.0445224668777;NR3C1:-0.0450826036895;FOXM1:-0.0595347419552;CUX2:-0.0622594499862;SREBF1,2:-0.0645757340713;HNF4A_NR2F1,2:-0.0859648393475;GCM1,2:-0.0893141070322;EVI1:-0.093912405077;ZNF143:-0.101732661089;AR:-0.109832898838;FOXA2:-0.126651266807;NFIL3:-0.159022292042;TFDP1:-0.223816588189;NFE2L1:-0.273335384181;DBP:-0.280221552958;ATF4:-0.290801805517;SOX{8,9,10}:-0.300820134186;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.318233387138;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.324735705239;AHR_ARNT_ARNT2:-0.328573746415;ZNF384:-0.334037220631;RFX2..5_RFXANK_RFXAP:-0.338792877308;STAT5{A,B}:-0.340714180584;HNF1A:-0.345182732721;HBP1_HMGB_SSRP1_UBTF:-0.345607848979;PAX8:-0.384956617103;SMAD1..7,9:-0.40304937948;NR1H4:-0.416563242358;JUN:-0.41757495625;GLI1..3:-0.424581128536;POU5F1:-0.43275589882;MYFfamily:-0.451892699804;RREB1:-0.458738065895;PRRX1,2:-0.461405448761;ATF2:-0.463838265069;ARID5B:-0.475603194238;NR6A1:-0.506771949522;HMX1:-0.527818714065;TP53:-0.557682912279;REST:-0.558234104763;TAL1_TCF{3,4,12}:-0.560134624293;NKX2-3_NKX2-5:-0.574494811374;NFATC1..3:-0.578242320309;ZNF148:-0.593035825082;SOX2:-0.59610098444;UFEwm:-0.599478695326;BACH2:-0.613319196495;CEBPA,B_DDIT3:-0.643153631689;SRF:-0.651002431067;EP300:-0.65704282654;FOXP3:-0.673996940863;ESR1:-0.681760756077;VSX1,2:-0.706351507603;ADNP_IRX_SIX_ZHX:-0.713487483384;ZNF238:-0.726934043441;PAX5:-0.727612733488;FOXL1:-0.745307415688;FOS_FOS{B,L1}_JUN{B,D}:-0.749233947189;TFAP4:-0.749442710679;CDC5L:-0.755637137949;ONECUT1,2:-0.763760493053;PPARG:-0.799562167712;NFE2:-0.812871405998;XCPE1{core}:-0.839655247377;MEF2{A,B,C,D}:-0.846061799344;HOXA9_MEIS1:-0.890922201911;MYBL2:-0.906169067591;EBF1:-0.914248311307;MED-1{core}:-0.932500425547;LHX3,4:-0.944473796622;ZFP161:-0.952750079969;HLF:-0.953157039253;FOSL2:-0.955523451731;MZF1:-0.971246562293;ALX4:-0.971955540351;TFCP2:-0.985014973194;RFX1:-0.985416416266;ZBTB6:-1.01330889874;EGR1..3:-1.01816939362;NFE2L2:-1.0301299113;NHLH1,2:-1.07361048123;PRDM1:-1.08179661201;SOX17:-1.0867782265;KLF4:-1.11585844216;ZNF423:-1.11960788867;bHLH_family:-1.12129077196;HIF1A:-1.12774722243;NANOG:-1.16110799894;TFAP2B:-1.16859003666;HIC1:-1.17519523581;POU6F1:-1.18198448797;HMGA1,2:-1.22265270572;GFI1B:-1.23314234608;GATA4:-1.24098725675;RBPJ:-1.24467086628;MTE{core}:-1.34840712545;NFIX:-1.36142140949;HOX{A4,D4}:-1.39938057426;MTF1:-1.40348774571;TEF:-1.42335028749;PATZ1:-1.44398686591;MAZ:-1.45261036449;TBX4,5:-1.4626081507;TBP:-1.47651277618;GZF1:-1.48479481773;GTF2I:-1.48957880873;GTF2A1,2:-1.50924049376;ESRRA:-1.52819434933;HSF1,2:-1.54115646063;MAFB:-1.58442779884;TFAP2{A,C}:-1.58581815647;PAX1,9:-1.60029227199;TEAD1:-1.63079560987;HOX{A5,B5}:-1.65898643318;RXR{A,B,G}:-1.6650163034;EN1,2:-1.73255511564;XBP1:-1.74976470712;ZIC1..3:-1.80225854276;SP1:-1.84249074056;IKZF1:-1.84738015723;NKX3-2:-1.93512863669;TLX1..3_NFIC{dimer}:-2.00325198928 | |top_motifs=CDX1,2,4:3.11001094298;PAX4:2.24567056145;ZBTB16:2.06882886046;ELF1,2,4:1.99669613662;FOXP1:1.98069459248;IKZF2:1.97929463858;PAX3,7:1.83143189526;PITX1..3:1.81613952657;RUNX1..3:1.74351701807;NKX6-1,2:1.71357003498;TLX2:1.49197283798;POU1F1:1.43563262123;ETS1,2:1.39867365457;STAT1,3:1.2723543365;DMAP1_NCOR{1,2}_SMARC:1.27220492024;PDX1:1.15120933888;SPI1:1.14044712124;POU2F1..3:1.13756097294;TOPORS:1.07767323404;NKX3-1:1.02916555776;IRF1,2:1.01044144149;E2F1..5:0.992994841053;ELK1,4_GABP{A,B1}:0.979362537235;SPZ1:0.954752207834;PBX1:0.947806144289;NKX2-2,8:0.904170133495;RORA:0.87171974374;NKX2-1,4:0.845062640551;SPIB:0.838072080264;BREu{core}:0.742175412985;GATA6:0.710304527092;FOXO1,3,4:0.6554146712;YY1:0.646273417029;HOX{A6,A7,B6,B7}:0.630240929396;NANOG{mouse}:0.62289444935;TGIF1:0.605078344644;NFY{A,B,C}:0.562389491849;FOX{F1,F2,J1}:0.472325442893;ALX1:0.456495635592;BPTF:0.453554675956;AIRE:0.452055307798;FOX{I1,J2}:0.386005280518;LEF1_TCF7_TCF7L1,2:0.385954286243;FOX{D1,D2}:0.37008928713;FOXD3:0.336179469647;IRF7:0.328184768762;SOX5:0.3187559866;T:0.311811686534;RXRA_VDR{dimer}:0.25099675304;SNAI1..3:0.245135520067;OCT4_SOX2{dimer}:0.238137765252;CRX:0.198261457519;PAX6:0.193503691512;CREB1:0.180382742625;NFKB1_REL_RELA:0.180113713963;ZEB1:0.172584943493;MYOD1:0.136496045273;ATF5_CREB3:0.127950348461;MYB:0.109876270095;LMO2:0.0977499222588;STAT2,4,6:0.0890508075616;GFI1:0.0850977168369;POU3F1..4:0.0717969268294;NR5A1,2:0.061168449013;ATF6:0.0522310474888;FOXN1:0.0503205885551;NRF1:0.0453360708909;HAND1,2:0.0281572156595;PAX2:-0.00594804360111;FOXQ1:-0.0183270777757;HES1:-0.0445224668777;NR3C1:-0.0450826036895;FOXM1:-0.0595347419552;CUX2:-0.0622594499862;SREBF1,2:-0.0645757340713;HNF4A_NR2F1,2:-0.0859648393475;GCM1,2:-0.0893141070322;EVI1:-0.093912405077;ZNF143:-0.101732661089;AR:-0.109832898838;FOXA2:-0.126651266807;NFIL3:-0.159022292042;TFDP1:-0.223816588189;NFE2L1:-0.273335384181;DBP:-0.280221552958;ATF4:-0.290801805517;SOX{8,9,10}:-0.300820134186;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.318233387138;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.324735705239;AHR_ARNT_ARNT2:-0.328573746415;ZNF384:-0.334037220631;RFX2..5_RFXANK_RFXAP:-0.338792877308;STAT5{A,B}:-0.340714180584;HNF1A:-0.345182732721;HBP1_HMGB_SSRP1_UBTF:-0.345607848979;PAX8:-0.384956617103;SMAD1..7,9:-0.40304937948;NR1H4:-0.416563242358;JUN:-0.41757495625;GLI1..3:-0.424581128536;POU5F1:-0.43275589882;MYFfamily:-0.451892699804;RREB1:-0.458738065895;PRRX1,2:-0.461405448761;ATF2:-0.463838265069;ARID5B:-0.475603194238;NR6A1:-0.506771949522;HMX1:-0.527818714065;TP53:-0.557682912279;REST:-0.558234104763;TAL1_TCF{3,4,12}:-0.560134624293;NKX2-3_NKX2-5:-0.574494811374;NFATC1..3:-0.578242320309;ZNF148:-0.593035825082;SOX2:-0.59610098444;UFEwm:-0.599478695326;BACH2:-0.613319196495;CEBPA,B_DDIT3:-0.643153631689;SRF:-0.651002431067;EP300:-0.65704282654;FOXP3:-0.673996940863;ESR1:-0.681760756077;VSX1,2:-0.706351507603;ADNP_IRX_SIX_ZHX:-0.713487483384;ZNF238:-0.726934043441;PAX5:-0.727612733488;FOXL1:-0.745307415688;FOS_FOS{B,L1}_JUN{B,D}:-0.749233947189;TFAP4:-0.749442710679;CDC5L:-0.755637137949;ONECUT1,2:-0.763760493053;PPARG:-0.799562167712;NFE2:-0.812871405998;XCPE1{core}:-0.839655247377;MEF2{A,B,C,D}:-0.846061799344;HOXA9_MEIS1:-0.890922201911;MYBL2:-0.906169067591;EBF1:-0.914248311307;MED-1{core}:-0.932500425547;LHX3,4:-0.944473796622;ZFP161:-0.952750079969;HLF:-0.953157039253;FOSL2:-0.955523451731;MZF1:-0.971246562293;ALX4:-0.971955540351;TFCP2:-0.985014973194;RFX1:-0.985416416266;ZBTB6:-1.01330889874;EGR1..3:-1.01816939362;NFE2L2:-1.0301299113;NHLH1,2:-1.07361048123;PRDM1:-1.08179661201;SOX17:-1.0867782265;KLF4:-1.11585844216;ZNF423:-1.11960788867;bHLH_family:-1.12129077196;HIF1A:-1.12774722243;NANOG:-1.16110799894;TFAP2B:-1.16859003666;HIC1:-1.17519523581;POU6F1:-1.18198448797;HMGA1,2:-1.22265270572;GFI1B:-1.23314234608;GATA4:-1.24098725675;RBPJ:-1.24467086628;MTE{core}:-1.34840712545;NFIX:-1.36142140949;HOX{A4,D4}:-1.39938057426;MTF1:-1.40348774571;TEF:-1.42335028749;PATZ1:-1.44398686591;MAZ:-1.45261036449;TBX4,5:-1.4626081507;TBP:-1.47651277618;GZF1:-1.48479481773;GTF2I:-1.48957880873;GTF2A1,2:-1.50924049376;ESRRA:-1.52819434933;HSF1,2:-1.54115646063;MAFB:-1.58442779884;TFAP2{A,C}:-1.58581815647;PAX1,9:-1.60029227199;TEAD1:-1.63079560987;HOX{A5,B5}:-1.65898643318;RXR{A,B,G}:-1.6650163034;EN1,2:-1.73255511564;XBP1:-1.74976470712;ZIC1..3:-1.80225854276;SP1:-1.84249074056;IKZF1:-1.84738015723;NKX3-2:-1.93512863669;TLX1..3_NFIC{dimer}:-2.00325198928 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11917-125G9;search_select_hide=table117:FF:11917-125G9 | |||
}} | }} |
Latest revision as of 18:29, 4 June 2020
Name: | CD4+CD25-CD45RA+ naive conventional T cells expanded, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13814 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13814
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13814
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0806 |
10 | 10 | 0.00508 |
100 | 100 | 0.469 |
101 | 101 | 0.0952 |
102 | 102 | 0.473 |
103 | 103 | 0.799 |
104 | 104 | 0.589 |
105 | 105 | 0.255 |
106 | 106 | 0.41 |
107 | 107 | 0.462 |
108 | 108 | 0.846 |
109 | 109 | 0.108 |
11 | 11 | 0.0398 |
110 | 110 | 0.395 |
111 | 111 | 0.27 |
112 | 112 | 0.285 |
113 | 113 | 0.318 |
114 | 114 | 0.439 |
115 | 115 | 0.27 |
116 | 116 | 0.515 |
117 | 117 | 0.00407 |
118 | 118 | 0.357 |
119 | 119 | 0.551 |
12 | 12 | 0.581 |
120 | 120 | 0.782 |
121 | 121 | 0.964 |
122 | 122 | 0.669 |
123 | 123 | 6.73911e-7 |
124 | 124 | 0.334 |
125 | 125 | 0.948 |
126 | 126 | 0.463 |
127 | 127 | 0.725 |
128 | 128 | 0.751 |
129 | 129 | 0.339 |
13 | 13 | 0.469 |
130 | 130 | 0.659 |
131 | 131 | 0.62 |
132 | 132 | 0.61 |
133 | 133 | 0.364 |
134 | 134 | 0.668 |
135 | 135 | 0.837 |
136 | 136 | 0.721 |
137 | 137 | 0.243 |
138 | 138 | 0.317 |
139 | 139 | 0.194 |
14 | 14 | 0.491 |
140 | 140 | 0.019 |
141 | 141 | 0.539 |
142 | 142 | 0.701 |
143 | 143 | 0.00451 |
144 | 144 | 0.442 |
145 | 145 | 0.135 |
146 | 146 | 0.662 |
147 | 147 | 0.216 |
148 | 148 | 0.0613 |
149 | 149 | 0.868 |
15 | 15 | 0.273 |
150 | 150 | 0.603 |
151 | 151 | 0.542 |
152 | 152 | 0.339 |
153 | 153 | 0.932 |
154 | 154 | 0.496 |
155 | 155 | 0.0623 |
156 | 156 | 0.851 |
157 | 157 | 0.19 |
158 | 158 | 0.22 |
159 | 159 | 0.505 |
16 | 16 | 0.729 |
160 | 160 | 0.287 |
161 | 161 | 0.168 |
162 | 162 | 0.447 |
163 | 163 | 0.287 |
164 | 164 | 0.0628 |
165 | 165 | 0.642 |
166 | 166 | 0.78 |
167 | 167 | 0.139 |
168 | 168 | 0.628 |
169 | 169 | 0.344 |
17 | 17 | 0.915 |
18 | 18 | 0.981 |
19 | 19 | 0.645 |
2 | 2 | 0.912 |
20 | 20 | 0.522 |
21 | 21 | 0.168 |
22 | 22 | 0.834 |
23 | 23 | 0.504 |
24 | 24 | 0.932 |
25 | 25 | 0.0669 |
26 | 26 | 0.0335 |
27 | 27 | 0.239 |
28 | 28 | 0.712 |
29 | 29 | 0.0148 |
3 | 3 | 0.0389 |
30 | 30 | 0.08 |
31 | 31 | 0.991 |
32 | 32 | 0.526 |
33 | 33 | 0.643 |
34 | 34 | 0.938 |
35 | 35 | 0.224 |
36 | 36 | 0.0188 |
37 | 37 | 0.297 |
38 | 38 | 0.544 |
39 | 39 | 0.36 |
4 | 4 | 0.968 |
40 | 40 | 0.289 |
41 | 41 | 0.74 |
42 | 42 | 0.0931 |
43 | 43 | 0.397 |
44 | 44 | 0.502 |
45 | 45 | 0.412 |
46 | 46 | 0.11 |
47 | 47 | 0.0163 |
48 | 48 | 0.0469 |
49 | 49 | 0.0982 |
5 | 5 | 0.795 |
50 | 50 | 1 |
51 | 51 | 0.716 |
52 | 52 | 0.347 |
53 | 53 | 0.117 |
54 | 54 | 0.794 |
55 | 55 | 0.595 |
56 | 56 | 0.4 |
57 | 57 | 0.177 |
58 | 58 | 0.0814 |
59 | 59 | 0.422 |
6 | 6 | 0.394 |
60 | 60 | 0.496 |
61 | 61 | 0.128 |
62 | 62 | 0.0538 |
63 | 63 | 0.357 |
64 | 64 | 0.154 |
65 | 65 | 0.787 |
66 | 66 | 0.672 |
67 | 67 | 0.515 |
68 | 68 | 0.958 |
69 | 69 | 0.986 |
7 | 7 | 0.238 |
70 | 70 | 0.111 |
71 | 71 | 0.0308 |
72 | 72 | 0.17 |
73 | 73 | 0.546 |
74 | 74 | 0.538 |
75 | 75 | 0.0125 |
76 | 76 | 0.195 |
77 | 77 | 0.41 |
78 | 78 | 0.0155 |
79 | 79 | 0.499 |
8 | 8 | 0.432 |
80 | 80 | 0.248 |
81 | 81 | 0.343 |
82 | 82 | 0.0926 |
83 | 83 | 0.407 |
84 | 84 | 0.0336 |
85 | 85 | 0.702 |
86 | 86 | 0.248 |
87 | 87 | 0.663 |
88 | 88 | 0.796 |
89 | 89 | 0.237 |
9 | 9 | 0.871 |
90 | 90 | 0.049 |
91 | 91 | 0.274 |
92 | 92 | 0.451 |
93 | 93 | 0.309 |
94 | 94 | 0.144 |
95 | 95 | 0.0121 |
96 | 96 | 0.176 |
97 | 97 | 0.239 |
98 | 98 | 0.402 |
99 | 99 | 0.367 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13814
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0000210 human sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA