FFCP PHASE1:Hg19::chr10:131762504..131762555,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:131762504..131762555,- to FFCP PHASE1:Hg19::chr10:131762504..131762555,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=253738 | |EntrezGene=253738 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19087 | |HGNC=19087 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000471715_5end | |||
|cluster_id=chr10:131762504..131762555,- | |||
|coexpression_cluster_id=C2990 | |||
|description=CAGE_peak_1_at_EBF3_5end | |||
|id=chr10:131762504..131762555,- | |||
|ontology_enrichment_celltype=CL:0000055!4.57e-19!180;CL:0000057!6.63e-14!75;CL:0000680!3.68e-08!57;CL:0000056!3.68e-08!57;CL:0000355!3.68e-08!57;CL:0002334!3.86e-08!12;CL:0000187!6.10e-07!54;CL:0000136!8.23e-07!15;CL:0002494!8.38e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002334;6.30e-10;12!CL:0000188;6.97e-08;9!CL:0002494;6.96e-07;16!CL:0000136;7.70e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,5.77e-10,12;CL:0000057,1.20e-09,76;CL:0000136,1.66e-08,15;CL:0000680,1.94e-08,58;CL:0000056,1.94e-08,58;CL:0000355,1.94e-08,58;CL:0000188,7.83e-08,9;CL:0000187,5.18e-07,55;CL:0002494,6.95e-07,16 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;8.87e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,8.31e-08,10 | |||
|ontology_enrichment_uberon=UBERON:0007100!4.46e-12!27;UBERON:0000948!8.05e-11!24;UBERON:0005498!8.05e-11!24;UBERON:0004140!8.05e-11!24;UBERON:0009881!8.05e-11!24;UBERON:0004141!8.05e-11!24;UBERON:0003084!8.05e-11!24;UBERON:0007005!8.05e-11!24;UBERON:0004139!8.05e-11!24;UBERON:0004291!8.05e-11!24;UBERON:0000914!1.03e-10!83;UBERON:0002329!1.03e-10!83;UBERON:0003077!1.03e-10!83;UBERON:0003059!1.03e-10!83;UBERON:0007282!1.03e-10!83;UBERON:0009618!1.03e-10!83;UBERON:0007285!1.03e-10!83;UBERON:0002385!4.62e-10!63;UBERON:0001015!4.62e-10!63;UBERON:0000383!4.62e-10!63;UBERON:0001134!8.10e-10!61;UBERON:0002036!8.10e-10!61;UBERON:0003082!8.10e-10!61;UBERON:0004290!9.10e-10!70;UBERON:0000486!6.22e-08!82;UBERON:0004872!4.31e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0001134;7.74e-13;16!UBERON:0002036;7.74e-13;16!UBERON:0007100;1.17e-12;25!UBERON:0002385;1.38e-12;31!UBERON:0001015;1.38e-12;31!UBERON:0000383;1.38e-12;31!UBERON:0000948;5.11e-11;22!UBERON:0002204;1.22e-08;70!UBERON:0004457;4.98e-08;9!UBERON:0000042;4.98e-08;9!UBERON:0001013;1.52e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,1.86e-13,27;UBERON:0000948,7.26e-12,24;UBERON:0005498,7.26e-12,24;UBERON:0004140,7.26e-12,24;UBERON:0009881,7.26e-12,24;UBERON:0004141,7.26e-12,24;UBERON:0003084,7.26e-12,24;UBERON:0007005,7.26e-12,24;UBERON:0004139,7.26e-12,24;UBERON:0004291,7.26e-12,24;UBERON:0002385,1.91e-10,64;UBERON:0001015,1.91e-10,64;UBERON:0000383,1.91e-10,64;UBERON:0001134,2.09e-10,62;UBERON:0002036,2.09e-10,62;UBERON:0003082,2.09e-10,62;UBERON:0002329,3.94e-09,71;UBERON:0003059,3.94e-09,71;UBERON:0007282,3.94e-09,71;UBERON:0004290,3.94e-09,71;UBERON:0009618,3.94e-09,71;UBERON:0007524,4.01e-09,73;UBERON:0003077,7.85e-09,72;UBERON:0007285,7.85e-09,72;UBERON:0000486,3.20e-08,83;UBERON:0001013,1.38e-07,14;UBERON:0007503,3.09e-07,78;UBERON:0003103,3.72e-07,68 | |||
|phase1_expression=3.99692434395225,8.99222200342129,7.3296290129905,4.00293193412522,8.49226079411847,3.48935409640147,0,1.26343974685366,4.44015567939725,0,0,0,0.263766978228454,3.34169152992126,4.97096063591874,1.34465029290355,0.602694528023977,2.92124036154949,3.41552959153355,0.369363174230364,0.408001382488506,0,0,0,0,0,0,0,0,0,2.16742572642506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.63239701580021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,6.70700859703636,3.19656404608826,5.78302643815306,4.51204119572301,3.18662341713812,0,1.45990461090791,0,0.221729397462564,0.087834785693126,0.851363990735132,0,0,0.324547393654683,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,5.94358546089456,9.60568909254118,8.70273593188143,0,0,0.976248230192678,2.20597848207521,0.81014194788176,0.357198913136319,0.22452937262617,0.900891843866578,0,0,0.183201743930407,0,0,0,3.47880366186723,4.05217637326655,0.794455084879313,11.7603014507014,4.25602058638028,5.04609840128076,4.2699598291882,0.98667019366864,15.2493407345885,5.79255889899659,9.97117608992098,1.96764655938411,1.15235184896,0,3.74592092196385,0.570471821544449,1.19558944441441,1.29177948508141,0.323745888736263,0.561803226808994,0.408308342509787,0.368502951935304,0.723280468230358,2.37600571456411,8.90160945402805,5.46096817162816,3.59309070908119,0.505008341862199,0.500474079487857,0.554128230968366,3.5118209670467,8.58165828237255,11.7185685947146,2.1552114800404,0.89694817844431,1.2813443329114,0.635795703478686,1.50045548042201,1.75189299705346,2.06112432036503,0.744467425326359,4.21940830603166,1.46155507741798,2.27190396819703,1.10459878370759,0.80823028409406,0,0.201504196455281,0.339121184620975,0,0,0,0.243947412259191,0.132529768321485,0.580969714347592,3.10983165046111,0,0,0,0.643240938192885,0,0.464367928031979,0,0.118306800039844,0,0,0,0,0,0,0,0,0.738155454624648,8.41450642820675,0,2.94017422771084,0,0,1.18157981336281,0,0.245976877086227,0,0,0,0,0,0,0,0,0,0,0.433099343283221,1.38895653772983,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0.621984346622316,0.144119953416961,0.12624243342638,0.063497894292169,0.381988425558278,0,3.4214489204541,0,0,0.857479297891735,1.23344192779897,2.1798003441664,0.2933531432838,0,3.57656445851882,1.690605505112,0,0,1.28603687131071,1.41849132023278,1.8649552531127,0.714889968290738,0,0,1.30294473717494,0,0,0,0,0,0,0,0,0,1.14861935834114,64.1866072683233,8.10775317338444,5.95881335396112,25.2475958168253,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0.637938751653163,0,0,0,3.55805325985506,5.50187573165645,5.96783052139418,0,0.356857977594324,0,0.35142424497814,6.62081419400982,4.5481500811197,5.17365356462525,1.99267679560631,6.45292089895961,1.47702144595741,0.783204629850962,2.05886054286514,0,0,0,1.21251028578504,0,0.907170879989041,5.95458738765064,13.6581156226376,12.3490441550552,6.91951405980785,5.11707249066703,6.11244900345709,5.93672265779964,8.63574285294871,9.58833316690886,12.5654548701128,7.2695620085707,16.3856633628543,0.483437798366489,0,0,0.574072240823034,1.27463817604702,5.11385218341754,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.618246069886334,0,0,0,0,0,14.6939491804025,7.85647947284686,10.7452572308291,6.34048233428841,4.0819693049944,8.84601832876794,5.45450415463046,8.01288320820636,0,0,0,0.2023155617111,1.85938219718914,1.88887408098384,2.7881490806424,0.616067160352178,3.72614221221915,0.869932992075073,0,0.143124886741991,1.116475108079,4.42931194606216,0,0.255897791311334,0.42793898803392,3.81843897511124,0,2.15846949099978,3.84351841630477,4.00562167975334,2.62837226045311,0,4.63384301862879,0,3.41198885483798,1.05650146756755,2.18399858252777,0.424216295861138,6.78048699721457,6.61638412255349,0,0,1.15755106853338,1.9676842561399,0,0.30982349809975,3.66204283291914,0,0,0,0,21.7440864356594,28.6486556875115,0,0,0,0.670302275535787,0,0.753150406214233,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0.735120647943095,0,0.144269212976445,0,0.478278818186467,0,0.191505370132367,0,0,0,76.002148118053,1.09675927041116,0,1.86220955581764,4.17528995269619,5.85219150854038,0,0,0.614481528616916,0.894704431569664,0,0.976940477010201,0,0,0,0,0,0,11.5741461624796,0,0,0,0.47748896947538,2.37571744666111,0.307160702099232,0,0.281338832821026,0,0,1.68900326502395,5.57894367102995,3.03912307084262,11.840839149151,0,0,0.311039587661807,0,0.358042349351218,0,3.94573622547734,0,10.0023291130173,0,0.0927680981618513,0,0,0,28.2749834419569,0.227586896570999,0,0,19.9951156480049,1.16641845353302,5.90324982773194,0,0,1.52581736317083,0.442317039724898,1.18219047581419,1.09692698576986,0,0.139423744278603,5.2326175782582,0,0,0.269272933229316,0,0,0.274792780205587,0,0,10.3606969220716,0,0,0,0,0,0,0,0.163232808159148,0.706765357169704,0,2.98578579323551,3.27292988662355,6.11030144933625,0,0,0,0.134802265961354,33.7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| 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| ||
|short_description=p1@EBF3 | |||
}} | }} |
Latest revision as of 03:01, 17 September 2015
Short description: | p1@EBF3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_EBF3_5end |
Coexpression cluster: | C2990_neuroectodermal_acute_skeletal_Myoblast_rectum_synovial_sacrococcigeal |
Association with transcript: | 0bp_to_ENST00000471715_5end |
EntrezGene: | EBF3 |
HGNC: | 19087 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 5.77e-10 | 12 |
fibroblast | 1.20e-09 | 76 |
fat cell | 1.66e-08 | 15 |
muscle precursor cell | 1.94e-08 | 58 |
myoblast | 1.94e-08 | 58 |
multi-potent skeletal muscle stem cell | 1.94e-08 | 58 |
cell of skeletal muscle | 7.83e-08 | 9 |
muscle cell | 5.18e-07 | 55 |
cardiocyte | 6.95e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 1.86e-13 | 27 |
heart | 7.26e-12 | 24 |
primitive heart tube | 7.26e-12 | 24 |
primary heart field | 7.26e-12 | 24 |
anterior lateral plate mesoderm | 7.26e-12 | 24 |
heart tube | 7.26e-12 | 24 |
heart primordium | 7.26e-12 | 24 |
cardiac mesoderm | 7.26e-12 | 24 |
cardiogenic plate | 7.26e-12 | 24 |
heart rudiment | 7.26e-12 | 24 |
muscle tissue | 1.91e-10 | 64 |
musculature | 1.91e-10 | 64 |
musculature of body | 1.91e-10 | 64 |
skeletal muscle tissue | 2.09e-10 | 62 |
striated muscle tissue | 2.09e-10 | 62 |
myotome | 2.09e-10 | 62 |
somite | 3.94e-09 | 71 |
presomitic mesoderm | 3.94e-09 | 71 |
presumptive segmental plate | 3.94e-09 | 71 |
dermomyotome | 3.94e-09 | 71 |
trunk paraxial mesoderm | 3.94e-09 | 71 |
dense mesenchyme tissue | 4.01e-09 | 73 |
paraxial mesoderm | 7.85e-09 | 72 |
presumptive paraxial mesoderm | 7.85e-09 | 72 |
multilaminar epithelium | 3.20e-08 | 83 |
adipose tissue | 1.38e-07 | 14 |
epithelial vesicle | 3.09e-07 | 78 |
compound organ | 3.72e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 8.31e-08 | 10 |