FFCP PHASE1:Hg19::chr10:14050522..14050584,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr10:14050522..14050584,- to FFCP PHASE1:Hg19::chr10:14050522..14050584,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55691 | |EntrezGene=55691 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25491 | |HGNC=25491 | ||
|TSSclassifier=strong | |||
|UniProt=Q5T378 | |UniProt=Q5T378 | ||
|association_with_transcript=0bp_to_ENST00000342409_5end | |||
|cluster_id=chr10:14050522..14050584,- | |||
|coexpression_cluster_id=C2994 | |||
|description=CAGE_peak_3_at_FRMD4A_5end | |||
|id=chr10:14050522..14050584,- | |||
|ontology_enrichment_celltype=CL:0000222!6.64e-18!119;CL:0000055!3.71e-14!180;CL:0000183!5.46e-14!59;CL:0000187!3.11e-13!54;CL:0000192!5.15e-13!42;CL:0000514!5.15e-13!42;CL:0000680!2.08e-12!57;CL:0000056!2.08e-12!57;CL:0000355!2.08e-12!57;CL:0002139!3.58e-12!24;CL:0000359!8.38e-12!32;CL:0000115!5.58e-11!35;CL:0000393!3.94e-10!60;CL:0000211!3.94e-10!60;CL:0002078!2.11e-09!44;CL:0000071!3.31e-08!18;CL:0002546!3.31e-08!18;CL:0000213!3.03e-07!57;CL:0000215!3.03e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;1.18e-15;24!CL:0000359;4.40e-12;32!CL:0000115;1.99e-11;36!CL:0000071;1.70e-10;18!CL:0000192;3.63e-09;43!CL:0002078;1.31e-08;45!CL:0002539;3.98e-07;10!CL:0000187;4.48e-07;55!CL:0002138;5.38e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,1.49e-19,121;CL:0002139,1.41e-15,24;CL:0000115,4.35e-13,36;CL:0000359,9.54e-13,32;CL:0000187,1.61e-12,55;CL:0000192,1.66e-12,43;CL:0000514,1.66e-12,43;CL:0002078,8.34e-12,45;CL:0000680,3.63e-11,58;CL:0000056,3.63e-11,58;CL:0000355,3.63e-11,58;CL:0000071,1.93e-10,18;CL:0002546,1.93e-10,18;CL:0000393,5.68e-10,61;CL:0000211,5.68e-10,61;CL:0000213,3.24e-09,58;CL:0000215,3.24e-09,58;CL:0002539,3.02e-07,10;CL:0005020,5.67e-07,6;CL:0002138,5.67e-07,6;CL:0005022,5.67e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;1.70e-10;18!CL:0000514;3.63e-09;43!CL:0005022;5.38e-07;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.05e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.86e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002049!6.57e-23!79;UBERON:0007798!6.57e-23!79;UBERON:0000055!8.02e-22!69;UBERON:0001981!2.26e-20!60;UBERON:0007500!2.26e-20!60;UBERON:0004537!2.26e-20!60;UBERON:0006965!2.26e-20!60;UBERON:0001637!6.79e-17!42;UBERON:0003509!6.79e-17!42;UBERON:0004572!6.79e-17!42;UBERON:0004872!7.22e-17!84;UBERON:0001009!1.53e-16!113;UBERON:0004535!2.00e-16!110;UBERON:0004573!6.93e-14!33;UBERON:0004571!6.93e-14!33;UBERON:0004290!2.09e-13!70;UBERON:0001134!2.41e-13!61;UBERON:0002036!2.41e-13!61;UBERON:0003082!2.41e-13!61;UBERON:0002385!2.68e-13!63;UBERON:0001015!2.68e-13!63;UBERON:0000383!2.68e-13!63;UBERON:0000914!2.91e-13!83;UBERON:0002329!2.91e-13!83;UBERON:0003077!2.91e-13!83;UBERON:0003059!2.91e-13!83;UBERON:0007282!2.91e-13!83;UBERON:0009618!2.91e-13!83;UBERON:0007285!2.91e-13!83;UBERON:0000477!2.43e-12!286;UBERON:0000490!2.07e-11!138;UBERON:0000486!2.51e-11!82;UBERON:0000119!4.33e-11!312;UBERON:0000947!1.43e-10!21;UBERON:0010191!1.43e-10!21;UBERON:0003914!2.25e-10!118;UBERON:0000483!2.50e-10!309;UBERON:0000475!3.47e-10!365;UBERON:0004111!6.88e-10!241;UBERON:0000481!2.04e-09!347;UBERON:0000025!2.38e-09!194;UBERON:0000468!4.67e-09!659;UBERON:0001986!3.31e-08!18;UBERON:0004638!3.31e-08!18;UBERON:0004852!3.31e-08!18;UBERON:0005256!5.17e-08!143;UBERON:0006914!8.12e-08!25;UBERON:0000467!1.04e-07!625;UBERON:0000480!1.51e-07!626;UBERON:0002100!6.66e-07!216;UBERON:0001135!9.08e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.22e-15;33!UBERON:0004571;1.22e-15;33!UBERON:0001637;2.33e-14;42!UBERON:0003509;2.33e-14;42!UBERON:0004572;2.33e-14;42!UBERON:0000947;5.72e-13;21!UBERON:0010191;5.72e-13;21!UBERON:0000055;5.93e-13;65!UBERON:0007500;4.37e-12;56!UBERON:0001981;4.37e-12;56!UBERON:0004537;4.37e-12;56!UBERON:0004638;1.70e-10;18!UBERON:0001986;1.70e-10;18!UBERON:0004852;1.70e-10;18!UBERON:0002049;1.91e-10;75!UBERON:0007798;1.91e-10;75!UBERON:0006914;8.50e-10;25!UBERON:0000487;2.71e-08;22!UBERON:0002385;2.50e-07;31!UBERON:0001015;2.50e-07;31!UBERON:0000383;2.50e-07;31!UBERON:0003914;2.74e-07;74!UBERON:0004237;3.98e-07;10!UBERON:0004695;3.98e-07;10!UBERON:0002111;3.98e-07;10!UBERON:0004178;3.98e-07;10!UBERON:0001135;7.59e-07;15 | |||
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| ||
|short_description=p3@FRMD4A | |||
}} | }} |
Latest revision as of 07:06, 17 September 2015
Short description: | p3@FRMD4A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_FRMD4A_5end |
Coexpression cluster: | C2994_osteosarcoma_Fibroblast_mesodermal_Wilms_fibrous_Lymphatic_neuroectodermal |
Association with transcript: | 0bp_to_ENST00000342409_5end |
EntrezGene: | FRMD4A |
HGNC: | 25491 |
UniProt: | Q5T378 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 1.49e-19 | 121 |
endothelial cell of vascular tree | 1.41e-15 | 24 |
endothelial cell | 4.35e-13 | 36 |
vascular associated smooth muscle cell | 9.54e-13 | 32 |
muscle cell | 1.61e-12 | 55 |
smooth muscle cell | 1.66e-12 | 43 |
smooth muscle myoblast | 1.66e-12 | 43 |
meso-epithelial cell | 8.34e-12 | 45 |
muscle precursor cell | 3.63e-11 | 58 |
myoblast | 3.63e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.63e-11 | 58 |
blood vessel endothelial cell | 1.93e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.93e-10 | 18 |
electrically responsive cell | 5.68e-10 | 61 |
electrically active cell | 5.68e-10 | 61 |
lining cell | 3.24e-09 | 58 |
barrier cell | 3.24e-09 | 58 |
aortic smooth muscle cell | 3.02e-07 | 10 |
lymphangioblast | 5.67e-07 | 6 |
endothelial cell of lymphatic vessel | 5.67e-07 | 6 |
vascular lymphangioblast | 5.67e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.86e-07 | 14 |