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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005054
|DRA_sample_Accession=CAGE@SAMD00005054
|accession_numbers=CAGE;DRX008039;DRR008911;DRZ000336;DRZ001721
|accession_numbers=CAGE;DRX008039;DRR008911;DRZ000336;DRZ001721;DRZ011686;DRZ013071
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
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|library_id=CNhs12404
|library_id=CNhs12404
|library_id_phase_based=2:CNhs12404
|library_id_phase_based=2:CNhs12404
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;14326
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;14326
|name=Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)
|name=Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)
|namespace=FANTOM5
|namespace=FANTOM5
Line 58: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 96: Line 100:
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.35502431607;NKX3-1:1.9925040014;HIF1A:1.94656707998;ALX4:1.89628423387;XBP1:1.84545341271;NKX3-2:1.66593480388;GATA4:1.64599337219;SRF:1.56321229382;TOPORS:1.55588556089;TEAD1:1.530584385;KLF4:1.51508675712;MZF1:1.49281950222;GZF1:1.44595172798;NR3C1:1.44210721247;EN1,2:1.43553551646;PRDM1:1.37844894571;HOX{A5,B5}:1.36029033164;EVI1:1.34778702497;UFEwm:1.33884899257;ESR1:1.32811413257;HSF1,2:1.31231577022;AHR_ARNT_ARNT2:1.30683274548;STAT1,3:1.3041400044;GCM1,2:1.2560426208;ZNF384:1.17323849686;RXR{A,B,G}:1.16927186769;GFI1B:1.15556251917;ZNF238:1.12619592776;MYBL2:1.03859996097;HMGA1,2:0.975150804245;PAX8:0.97448978275;GFI1:0.967330294364;SOX17:0.95584796716;NKX2-1,4:0.918880679997;GTF2A1,2:0.880391882773;GTF2I:0.866072032246;NANOG{mouse}:0.86088772349;TEF:0.854176147249;EP300:0.841419794953;ELK1,4_GABP{A,B1}:0.780697791399;BPTF:0.778799553722;TFAP4:0.727131846093;ATF6:0.712857174937;NR1H4:0.705450201206;NFE2L1:0.688467838893;ZIC1..3:0.671942534724;GLI1..3:0.659633166429;RXRA_VDR{dimer}:0.656057666117;RREB1:0.649481268055;FOXL1:0.605113024615;NKX2-2,8:0.600337384474;TAL1_TCF{3,4,12}:0.581953996811;NFIX:0.581537599738;TFDP1:0.563887247275;ARID5B:0.554787619565;ZBTB16:0.52880667689;EBF1:0.517834617184;HMX1:0.516423851104;ZNF143:0.514185997281;YY1:0.508760920533;MAZ:0.504881909942;MYB:0.501707288837;TP53:0.499332886617;TLX1..3_NFIC{dimer}:0.492985754656;E2F1..5:0.491244132146;ZBTB6:0.483646782541;RFX1:0.482037583605;NRF1:0.472148523691;SPZ1:0.44798394209;MTE{core}:0.446853874767;POU3F1..4:0.438907732279;XCPE1{core}:0.426881954258;AIRE:0.423355197772;TFAP2{A,C}:0.419615241092;MAFB:0.409302739446;HLF:0.401858437722;FOXP1:0.380219299126;STAT5{A,B}:0.373712578314;IKZF1:0.37295673821;CDX1,2,4:0.367044639086;MED-1{core}:0.361498691288;PATZ1:0.346598266;FOX{I1,J2}:0.337449331541;FOXN1:0.323074061121;HOX{A4,D4}:0.318557803151;CREB1:0.316022729759;POU1F1:0.305294458159;CEBPA,B_DDIT3:0.282961083172;NFATC1..3:0.250965172777;PRRX1,2:0.248276424839;PAX2:0.244665699935;NFE2:0.230259744347;PPARG:0.226729662022;BACH2:0.222938768293;NFE2L2:0.200504929238;ATF4:0.199336872565;NFY{A,B,C}:0.194226112084;SP1:0.185470617873;FOS_FOS{B,L1}_JUN{B,D}:0.180944918185;ATF5_CREB3:0.170827607475;ZFP161:0.166858334948;PAX3,7:0.14458318836;CRX:0.133954725522;DMAP1_NCOR{1,2}_SMARC:0.0990191265702;ELF1,2,4:0.0922114799794;MEF2{A,B,C,D}:0.0817255890372;PAX5:0.0427991400323;HAND1,2:0.0427799414655;TBX4,5:0.0387787654335;POU5F1:0.0378625832721;MYFfamily:0.00908136591144;TFAP2B:0.00138105419931;TLX2:-0.000589182428062;TBP:-0.0216027578055;RUNX1..3:-0.0303839102891;IRF1,2:-0.0535130996387;PAX4:-0.0605341665815;FOSL2:-0.0661267540537;HIC1:-0.0849915555811;PAX1,9:-0.092686771565;ONECUT1,2:-0.105713647718;EGR1..3:-0.111191274277;POU2F1..3:-0.116105377746;ZNF148:-0.130702448208;RBPJ:-0.141699535619;HES1:-0.148176636026;AR:-0.158416065324;HOXA9_MEIS1:-0.165455122536;SOX5:-0.166645252528;RFX2..5_RFXANK_RFXAP:-0.17199222138;HOX{A6,A7,B6,B7}:-0.184159000626;SMAD1..7,9:-0.201698076912;CDC5L:-0.203338472245;FOX{D1,D2}:-0.206809831944;FOXD3:-0.213154272211;TFCP2:-0.227030940348;FOXO1,3,4:-0.231336024198;PDX1:-0.248024404566;LEF1_TCF7_TCF7L1,2:-0.259268272331;FOXP3:-0.266405243251;NKX2-3_NKX2-5:-0.266972529177;TGIF1:-0.271835250781;LHX3,4:-0.275036055253;ATF2:-0.276358540914;SOX2:-0.283447768064;ZNF423:-0.293003731656;ALX1:-0.302236973861;STAT2,4,6:-0.304651673844;FOXA2:-0.310025882975;PITX1..3:-0.324215380746;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.327696024721;SPI1:-0.328292493578;HNF1A:-0.330958568748;DBP:-0.361020643771;ETS1,2:-0.387704636538;T:-0.389002042339;NR6A1:-0.428780312333;NHLH1,2:-0.431366184296;ADNP_IRX_SIX_ZHX:-0.44812095059;SREBF1,2:-0.449923716056;HNF4A_NR2F1,2:-0.452699211179;NKX6-1,2:-0.497353933333;NFKB1_REL_RELA:-0.536956804126;JUN:-0.549937204011;SOX{8,9,10}:-0.552090070811;IRF7:-0.561694283544;POU6F1:-0.565246456941;PBX1:-0.573867981636;SPIB:-0.594354672831;MTF1:-0.663022470932;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.668141303038;REST:-0.668540435395;FOXM1:-0.693665287732;OCT4_SOX2{dimer}:-0.768287606708;CUX2:-0.787696703853;bHLH_family:-0.805182951929;BREu{core}:-0.911512361616;GATA6:-0.957668122404;VSX1,2:-1.02130307977;FOXQ1:-1.02161958712;IKZF2:-1.02538016108;NFIL3:-1.09107055025;ZEB1:-1.13797101555;SNAI1..3:-1.20880205461;LMO2:-1.21582062788;ESRRA:-1.21688493018;NR5A1,2:-1.2261167828;FOX{F1,F2,J1}:-1.24173726343;PAX6:-1.27709341061;NANOG:-1.35414840008;RORA:-1.38718878171;MYOD1:-1.62757638117
|top_motifs=HBP1_HMGB_SSRP1_UBTF:2.35502431607;NKX3-1:1.9925040014;HIF1A:1.94656707998;ALX4:1.89628423387;XBP1:1.84545341271;NKX3-2:1.66593480388;GATA4:1.64599337219;SRF:1.56321229382;TOPORS:1.55588556089;TEAD1:1.530584385;KLF4:1.51508675712;MZF1:1.49281950222;GZF1:1.44595172798;NR3C1:1.44210721247;EN1,2:1.43553551646;PRDM1:1.37844894571;HOX{A5,B5}:1.36029033164;EVI1:1.34778702497;UFEwm:1.33884899257;ESR1:1.32811413257;HSF1,2:1.31231577022;AHR_ARNT_ARNT2:1.30683274548;STAT1,3:1.3041400044;GCM1,2:1.2560426208;ZNF384:1.17323849686;RXR{A,B,G}:1.16927186769;GFI1B:1.15556251917;ZNF238:1.12619592776;MYBL2:1.03859996097;HMGA1,2:0.975150804245;PAX8:0.97448978275;GFI1:0.967330294364;SOX17:0.95584796716;NKX2-1,4:0.918880679997;GTF2A1,2:0.880391882773;GTF2I:0.866072032246;NANOG{mouse}:0.86088772349;TEF:0.854176147249;EP300:0.841419794953;ELK1,4_GABP{A,B1}:0.780697791399;BPTF:0.778799553722;TFAP4:0.727131846093;ATF6:0.712857174937;NR1H4:0.705450201206;NFE2L1:0.688467838893;ZIC1..3:0.671942534724;GLI1..3:0.659633166429;RXRA_VDR{dimer}:0.656057666117;RREB1:0.649481268055;FOXL1:0.605113024615;NKX2-2,8:0.600337384474;TAL1_TCF{3,4,12}:0.581953996811;NFIX:0.581537599738;TFDP1:0.563887247275;ARID5B:0.554787619565;ZBTB16:0.52880667689;EBF1:0.517834617184;HMX1:0.516423851104;ZNF143:0.514185997281;YY1:0.508760920533;MAZ:0.504881909942;MYB:0.501707288837;TP53:0.499332886617;TLX1..3_NFIC{dimer}:0.492985754656;E2F1..5:0.491244132146;ZBTB6:0.483646782541;RFX1:0.482037583605;NRF1:0.472148523691;SPZ1:0.44798394209;MTE{core}:0.446853874767;POU3F1..4:0.438907732279;XCPE1{core}:0.426881954258;AIRE:0.423355197772;TFAP2{A,C}:0.419615241092;MAFB:0.409302739446;HLF:0.401858437722;FOXP1:0.380219299126;STAT5{A,B}:0.373712578314;IKZF1:0.37295673821;CDX1,2,4:0.367044639086;MED-1{core}:0.361498691288;PATZ1:0.346598266;FOX{I1,J2}:0.337449331541;FOXN1:0.323074061121;HOX{A4,D4}:0.318557803151;CREB1:0.316022729759;POU1F1:0.305294458159;CEBPA,B_DDIT3:0.282961083172;NFATC1..3:0.250965172777;PRRX1,2:0.248276424839;PAX2:0.244665699935;NFE2:0.230259744347;PPARG:0.226729662022;BACH2:0.222938768293;NFE2L2:0.200504929238;ATF4:0.199336872565;NFY{A,B,C}:0.194226112084;SP1:0.185470617873;FOS_FOS{B,L1}_JUN{B,D}:0.180944918185;ATF5_CREB3:0.170827607475;ZFP161:0.166858334948;PAX3,7:0.14458318836;CRX:0.133954725522;DMAP1_NCOR{1,2}_SMARC:0.0990191265702;ELF1,2,4:0.0922114799794;MEF2{A,B,C,D}:0.0817255890372;PAX5:0.0427991400323;HAND1,2:0.0427799414655;TBX4,5:0.0387787654335;POU5F1:0.0378625832721;MYFfamily:0.00908136591144;TFAP2B:0.00138105419931;TLX2:-0.000589182428062;TBP:-0.0216027578055;RUNX1..3:-0.0303839102891;IRF1,2:-0.0535130996387;PAX4:-0.0605341665815;FOSL2:-0.0661267540537;HIC1:-0.0849915555811;PAX1,9:-0.092686771565;ONECUT1,2:-0.105713647718;EGR1..3:-0.111191274277;POU2F1..3:-0.116105377746;ZNF148:-0.130702448208;RBPJ:-0.141699535619;HES1:-0.148176636026;AR:-0.158416065324;HOXA9_MEIS1:-0.165455122536;SOX5:-0.166645252528;RFX2..5_RFXANK_RFXAP:-0.17199222138;HOX{A6,A7,B6,B7}:-0.184159000626;SMAD1..7,9:-0.201698076912;CDC5L:-0.203338472245;FOX{D1,D2}:-0.206809831944;FOXD3:-0.213154272211;TFCP2:-0.227030940348;FOXO1,3,4:-0.231336024198;PDX1:-0.248024404566;LEF1_TCF7_TCF7L1,2:-0.259268272331;FOXP3:-0.266405243251;NKX2-3_NKX2-5:-0.266972529177;TGIF1:-0.271835250781;LHX3,4:-0.275036055253;ATF2:-0.276358540914;SOX2:-0.283447768064;ZNF423:-0.293003731656;ALX1:-0.302236973861;STAT2,4,6:-0.304651673844;FOXA2:-0.310025882975;PITX1..3:-0.324215380746;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.327696024721;SPI1:-0.328292493578;HNF1A:-0.330958568748;DBP:-0.361020643771;ETS1,2:-0.387704636538;T:-0.389002042339;NR6A1:-0.428780312333;NHLH1,2:-0.431366184296;ADNP_IRX_SIX_ZHX:-0.44812095059;SREBF1,2:-0.449923716056;HNF4A_NR2F1,2:-0.452699211179;NKX6-1,2:-0.497353933333;NFKB1_REL_RELA:-0.536956804126;JUN:-0.549937204011;SOX{8,9,10}:-0.552090070811;IRF7:-0.561694283544;POU6F1:-0.565246456941;PBX1:-0.573867981636;SPIB:-0.594354672831;MTF1:-0.663022470932;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.668141303038;REST:-0.668540435395;FOXM1:-0.693665287732;OCT4_SOX2{dimer}:-0.768287606708;CUX2:-0.787696703853;bHLH_family:-0.805182951929;BREu{core}:-0.911512361616;GATA6:-0.957668122404;VSX1,2:-1.02130307977;FOXQ1:-1.02161958712;IKZF2:-1.02538016108;NFIL3:-1.09107055025;ZEB1:-1.13797101555;SNAI1..3:-1.20880205461;LMO2:-1.21582062788;ESRRA:-1.21688493018;NR5A1,2:-1.2261167828;FOX{F1,F2,J1}:-1.24173726343;PAX6:-1.27709341061;NANOG:-1.35414840008;RORA:-1.38718878171;MYOD1:-1.62757638117
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:14326-155E6;search_select_hide=table117:FF:14326-155E6
}}
}}

Latest revision as of 19:06, 4 June 2020

Name:Fibroblast - skin spinal muscular atrophy, donor1 (nuclear fraction)
Species:Human (Homo sapiens)
Library ID:CNhs12404
Sample type:fractionations and perturbations
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age3 year old child
cell typefibroblast
cell lineNA
companyCoriell
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005054
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12404 CAGE DRX008039 DRR008911
Accession ID Hg19

Library idBAMCTSS
CNhs12404 DRZ000336 DRZ001721
Accession ID Hg38

Library idBAMCTSS
CNhs12404 DRZ011686 DRZ013071
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.111
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.357
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.702
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.166
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.894
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.4
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.16
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.114
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.632
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.12
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0704
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0978
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.4
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0885
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0978
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.084
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.208
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.355
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.442
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.245
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.045
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.303
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.68
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.085
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12404

Jaspar motifP-value
MA0002.20.00521
MA0003.10.00159
MA0004.10.0646
MA0006.10.8
MA0007.10.478
MA0009.10.315
MA0014.10.309
MA0017.10.00163
MA0018.20.424
MA0019.10.802
MA0024.10.35
MA0025.10.0616
MA0027.10.554
MA0028.10.0502
MA0029.10.475
MA0030.10.169
MA0031.10.113
MA0035.25.46741e-5
MA0038.10.906
MA0039.20.136
MA0040.10.518
MA0041.10.339
MA0042.10.777
MA0043.10.362
MA0046.10.198
MA0047.20.396
MA0048.14.61887e-4
MA0050.10.285
MA0051.10.103
MA0052.10.261
MA0055.10.0922
MA0057.10.948
MA0058.10.0195
MA0059.10.0454
MA0060.10.576
MA0061.19.87221e-4
MA0062.20.31
MA0065.24.4943e-4
MA0066.10.0959
MA0067.10.949
MA0068.10.218
MA0069.10.0145
MA0070.10.287
MA0071.10.0607
MA0072.10.0923
MA0073.10.822
MA0074.10.358
MA0076.10.0111
MA0077.10.14
MA0078.10.17
MA0079.20.125
MA0080.25.1445e-9
MA0081.10.055
MA0083.18.87447e-4
MA0084.10.676
MA0087.10.115
MA0088.10.708
MA0090.10.00104
MA0091.10.492
MA0092.10.731
MA0093.10.0779
MA0099.20.153
MA0100.10.541
MA0101.10.00277
MA0102.20.528
MA0103.17.25543e-6
MA0104.20.00117
MA0105.19.81814e-4
MA0106.10.5
MA0107.12.4981e-4
MA0108.20.297
MA0111.10.0765
MA0112.20.12
MA0113.10.731
MA0114.10.0012
MA0115.10.174
MA0116.10.681
MA0117.10.533
MA0119.10.487
MA0122.10.369
MA0124.10.3
MA0125.10.172
MA0131.10.19
MA0135.10.553
MA0136.13.35283e-5
MA0137.20.564
MA0138.20.374
MA0139.10.22
MA0140.10.00712
MA0141.10.0133
MA0142.10.0723
MA0143.10.774
MA0144.10.863
MA0145.10.479
MA0146.10.671
MA0147.10.0331
MA0148.10.0805
MA0149.10.268
MA0150.10.104
MA0152.10.0998
MA0153.10.861
MA0154.10.0758
MA0155.10.325
MA0156.10.248
MA0157.10.0471
MA0159.10.316
MA0160.10.00276
MA0162.10.34
MA0163.10.478
MA0164.10.449
MA0258.10.0489
MA0259.10.793



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12404

Novel motifP-value
10.126
100.714
1000.709
1010.53
1020.164
1030.0885
1040.519
1050.5
1060.00716
1070.166
1080.632
1090.0874
110.141
1100.865
1110.0374
1120.453
1130.0235
1140.526
1150.387
1160.945
1170.834
1180.796
1190.29
120.826
1200.497
1210.786
1220.0323
1230.00968
1240.0587
1250.584
1260.211
1270.432
1280.0251
1290.274
130.611
1300.729
1310.335
1320.784
1330.912
1340.793
1350.766
1360.15
1370.527
1380.566
1390.103
140.602
1400.652
1410.403
1420.813
1430.0852
1440.962
1450.952
1460.0688
1470.229
1480.0161
1490.529
150.0256
1500.753
1510.047
1520.31
1530.962
1540.555
1550.0156
1560.783
1570.646
1580.455
1590.169
160.449
1600.29
1610.126
1620.888
1630.856
1640.728
1650.337
1660.0412
1670.508
1680.801
1690.502
170.68
180.8
190.914
20.525
200.875
210.24
220.731
230.797
240.335
250.153
260.909
270.269
280.746
290.815
30.563
300.69
310.466
325.79542e-4
330.569
340.609
350.656
360.0439
370.748
380.297
390.815
40.777
400.0209
410.207
420.337
430.235
440.271
450.226
460.352
470.159
480.358
490.142
50.552
500.776
510.414
520.409
530.31
540.394
550.765
560.337
570.61
580.14
590.258
60.811
600.0684
610.427
620.127
630.395
640.216
650.318
660.382
670.826
680.787
690.359
70.082
700.0196
710.625
720.409
730.53
740.0575
750.652
760.9
770.792
780.0803
790.0457
80.0611
800.216
810.438
820.428
830.0501
840.279
850.193
860.745
870.0895
880.605
890.567
90.694
900.192
910.917
920.419
930.442
940.214
950.379
960.977
970.839
980.035
990.212



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12404


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000408 (cellular fractionation sample)
0000350 (experimentally modified sample)
0000251 (human fibroblast - skin spinal muscular atrophy sample)
0000406 (nuclear fraction sample)
0000670 (human Fibroblast - skin spinal muscular atrophy, nuclear fraction sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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