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{{f5samples
{{f5samples
|DRA_sample_Accession=RNA-Seq@SAMD00013679
|DRA_sample_Accession=RNA-Seq@SAMD00013679
|accession_numbers=CAGE;DRX008050;DRR008922;DRZ000347;DRZ001732!RNA-Seq;DRX012341;DRR013789;DRZ002990;
|accession_numbers=CAGE;DRX008050;DRR008922;DRZ000347;DRZ001732;DRZ011697;DRZ013082!RNA-Seq;DRX012341;DRR013789;DRZ002990;
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000236
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|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_a=EFO:0002091;;FF:0000025;;FF:0000210
|is_obsolete=
|is_obsolete=
|library_id=CNhs12177
|library_id=CNhs12177!RDhi10007
|library_id_phase_based=2:CNhs12177
|library_id_phase_based=2:CNhs12177
|microRNAs=
|microRNAs=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=POU2F1..3:3.60678794268;POU5F1:3.3218637589;FOXA2:2.16038668294;PDX1:1.91716215155;FOX{F1,F2,J1}:1.89564701563;PBX1:1.77733695999;ELF1,2,4:1.52458156901;DMAP1_NCOR{1,2}_SMARC:1.51101526278;TLX2:1.43834472474;PAX6:1.40873229161;FOX{I1,J2}:1.35894961448;IRF1,2:1.34117024798;FOXO1,3,4:1.32876459412;RFX2..5_RFXANK_RFXAP:1.30243066963;CRX:1.30051921592;SPI1:1.27608470035;HES1:1.12326632125;ETS1,2:1.10682008351;MYOD1:1.05313354701;RUNX1..3:1.02229293402;NFKB1_REL_RELA:1.01845055747;NKX2-2,8:1.01657524969;SPIB:0.98216716093;FOX{D1,D2}:0.967599836904;YY1:0.929608581739;ELK1,4_GABP{A,B1}:0.906765213243;LMO2:0.878126803183;HBP1_HMGB_SSRP1_UBTF:0.874844862123;OCT4_SOX2{dimer}:0.865855957442;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.860209950863;STAT1,3:0.814522538744;ZEB1:0.780220807759;ESR1:0.759373742577;IRF7:0.737470189379;ALX1:0.733766608215;GATA6:0.714420792137;BPTF:0.71149783428;NANOG{mouse}:0.702140647838;CDX1,2,4:0.698640804661;LEF1_TCF7_TCF7L1,2:0.697314389328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.689985114784;NFIX:0.588152232688;VSX1,2:0.563378159834;AIRE:0.53190049906;NFIL3:0.505211725978;RORA:0.479350396776;CREB1:0.472946811081;SNAI1..3:0.463441638095;NKX6-1,2:0.406480205706;TGIF1:0.369676246206;MEF2{A,B,C,D}:0.334449516133;NR5A1,2:0.322281149884;GLI1..3:0.311972592641;HAND1,2:0.30071190871;ADNP_IRX_SIX_ZHX:0.254530336879;ATF5_CREB3:0.242179266855;CUX2:0.239095421957;SOX5:0.237491199977;RXRA_VDR{dimer}:0.228747868771;BREu{core}:0.219325236595;HMX1:0.205620573914;MYB:0.204462155922;STAT5{A,B}:0.17520961866;FOXP3:0.169807248533;PRRX1,2:0.145947534853;FOXN1:0.13887693584;ZNF148:0.118708993237;ATF4:0.112838897747;GFI1:0.0789110352884;ATF2:0.0602909475077;AR:0.0497790711932;EP300:0.0414085556162;ONECUT1,2:0.0341380659812;NHLH1,2:0.0276549756856;SOX{8,9,10}:0.00591545320107;PAX2:0.00492307547246;PAX3,7:-0.000215128560451;FOXQ1:-0.0112187443465;CDC5L:-0.0161292374807;NANOG:-0.0555367141508;ATF6:-0.0828756844404;FOXP1:-0.119999097201;EVI1:-0.123548057124;HOX{A6,A7,B6,B7}:-0.150077438582;ALX4:-0.182987278429;SMAD1..7,9:-0.18538788288;SREBF1,2:-0.18764881063;HNF4A_NR2F1,2:-0.191350452287;TFAP4:-0.212259979704;NR6A1:-0.226066482671;ZNF143:-0.229380695454;NFATC1..3:-0.230467089409;T:-0.232375365088;TAL1_TCF{3,4,12}:-0.232475707189;AHR_ARNT_ARNT2:-0.23611529685;bHLH_family:-0.240910699504;NFY{A,B,C}:-0.291485587662;HOX{A4,D4}:-0.291576769182;E2F1..5:-0.292180650886;ZFP161:-0.300679211818;ZBTB16:-0.310104216861;PRDM1:-0.317230289433;HNF1A:-0.332079500781;CEBPA,B_DDIT3:-0.338266958342;POU1F1:-0.339612910385;TBX4,5:-0.363269330797;TFCP2:-0.382479993809;SPZ1:-0.4371961118;FOSL2:-0.437442528425;NRF1:-0.450340398172;ARID5B:-0.461588128335;ZNF238:-0.465873992024;EBF1:-0.484891385123;FOXL1:-0.518628998171;NKX2-1,4:-0.522514390441;FOS_FOS{B,L1}_JUN{B,D}:-0.533048500065;NKX2-3_NKX2-5:-0.537166290954;IKZF2:-0.542939518003;PAX4:-0.543272495746;RFX1:-0.546874902761;MYFfamily:-0.548400544237;HSF1,2:-0.59963430533;TOPORS:-0.604734791602;SOX17:-0.636612107152;BACH2:-0.639838734316;TP53:-0.646586936055;SRF:-0.668740980401;PAX8:-0.673932843945;REST:-0.685979918754;HIF1A:-0.692446373044;TEF:-0.716539522221;JUN:-0.720175971797;NKX3-2:-0.722567328466;XBP1:-0.728087007923;MYBL2:-0.738462591713;RXR{A,B,G}:-0.813100527352;NR1H4:-0.815920154601;ZNF384:-0.83585831506;MTF1:-0.844101214564;HOX{A5,B5}:-0.872095916672;NFE2:-0.874406622379;SOX2:-0.88617732225;HLF:-0.894652414959;DBP:-0.898151114473;RBPJ:-0.898780513254;MAFB:-0.903612714137;HOXA9_MEIS1:-0.928224436863;GCM1,2:-0.951247072539;POU6F1:-0.958015199739;EGR1..3:-0.977296848789;NFE2L2:-1.00247207148;STAT2,4,6:-1.07055996218;TBP:-1.11671671161;FOXM1:-1.12315875277;PATZ1:-1.14852132386;NR3C1:-1.1493230042;POU3F1..4:-1.16457650787;GATA4:-1.18875112817;MZF1:-1.19879539352;GZF1:-1.20538618915;MED-1{core}:-1.20812052858;EN1,2:-1.21364673394;PPARG:-1.23352783277;GFI1B:-1.26398118905;MAZ:-1.27757768662;UFEwm:-1.33150488521;MTE{core}:-1.33502244186;ZNF423:-1.34757588951;RREB1:-1.35456039694;ESRRA:-1.36696782749;NKX3-1:-1.38719509305;TEAD1:-1.41114736883;HMGA1,2:-1.44665665934;LHX3,4:-1.44817502763;HIC1:-1.46517601182;PITX1..3:-1.5028364847;GTF2I:-1.52460455167;KLF4:-1.53628570673;ZIC1..3:-1.59181678187;XCPE1{core}:-1.63955576791;ZBTB6:-1.6994959762;TFAP2B:-1.71186789502;TLX1..3_NFIC{dimer}:-1.7325262558;TFAP2{A,C}:-1.73298274685;TFDP1:-1.81029707668;SP1:-1.83836569562;FOXD3:-1.86294493895;PAX5:-1.86370101696;GTF2A1,2:-2.12722736404;NFE2L1:-2.20344996766;IKZF1:-2.33717859597;PAX1,9:-2.77328462782
|top_motifs=POU2F1..3:3.60678794268;POU5F1:3.3218637589;FOXA2:2.16038668294;PDX1:1.91716215155;FOX{F1,F2,J1}:1.89564701563;PBX1:1.77733695999;ELF1,2,4:1.52458156901;DMAP1_NCOR{1,2}_SMARC:1.51101526278;TLX2:1.43834472474;PAX6:1.40873229161;FOX{I1,J2}:1.35894961448;IRF1,2:1.34117024798;FOXO1,3,4:1.32876459412;RFX2..5_RFXANK_RFXAP:1.30243066963;CRX:1.30051921592;SPI1:1.27608470035;HES1:1.12326632125;ETS1,2:1.10682008351;MYOD1:1.05313354701;RUNX1..3:1.02229293402;NFKB1_REL_RELA:1.01845055747;NKX2-2,8:1.01657524969;SPIB:0.98216716093;FOX{D1,D2}:0.967599836904;YY1:0.929608581739;ELK1,4_GABP{A,B1}:0.906765213243;LMO2:0.878126803183;HBP1_HMGB_SSRP1_UBTF:0.874844862123;OCT4_SOX2{dimer}:0.865855957442;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.860209950863;STAT1,3:0.814522538744;ZEB1:0.780220807759;ESR1:0.759373742577;IRF7:0.737470189379;ALX1:0.733766608215;GATA6:0.714420792137;BPTF:0.71149783428;NANOG{mouse}:0.702140647838;CDX1,2,4:0.698640804661;LEF1_TCF7_TCF7L1,2:0.697314389328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.689985114784;NFIX:0.588152232688;VSX1,2:0.563378159834;AIRE:0.53190049906;NFIL3:0.505211725978;RORA:0.479350396776;CREB1:0.472946811081;SNAI1..3:0.463441638095;NKX6-1,2:0.406480205706;TGIF1:0.369676246206;MEF2{A,B,C,D}:0.334449516133;NR5A1,2:0.322281149884;GLI1..3:0.311972592641;HAND1,2:0.30071190871;ADNP_IRX_SIX_ZHX:0.254530336879;ATF5_CREB3:0.242179266855;CUX2:0.239095421957;SOX5:0.237491199977;RXRA_VDR{dimer}:0.228747868771;BREu{core}:0.219325236595;HMX1:0.205620573914;MYB:0.204462155922;STAT5{A,B}:0.17520961866;FOXP3:0.169807248533;PRRX1,2:0.145947534853;FOXN1:0.13887693584;ZNF148:0.118708993237;ATF4:0.112838897747;GFI1:0.0789110352884;ATF2:0.0602909475077;AR:0.0497790711932;EP300:0.0414085556162;ONECUT1,2:0.0341380659812;NHLH1,2:0.0276549756856;SOX{8,9,10}:0.00591545320107;PAX2:0.00492307547246;PAX3,7:-0.000215128560451;FOXQ1:-0.0112187443465;CDC5L:-0.0161292374807;NANOG:-0.0555367141508;ATF6:-0.0828756844404;FOXP1:-0.119999097201;EVI1:-0.123548057124;HOX{A6,A7,B6,B7}:-0.150077438582;ALX4:-0.182987278429;SMAD1..7,9:-0.18538788288;SREBF1,2:-0.18764881063;HNF4A_NR2F1,2:-0.191350452287;TFAP4:-0.212259979704;NR6A1:-0.226066482671;ZNF143:-0.229380695454;NFATC1..3:-0.230467089409;T:-0.232375365088;TAL1_TCF{3,4,12}:-0.232475707189;AHR_ARNT_ARNT2:-0.23611529685;bHLH_family:-0.240910699504;NFY{A,B,C}:-0.291485587662;HOX{A4,D4}:-0.291576769182;E2F1..5:-0.292180650886;ZFP161:-0.300679211818;ZBTB16:-0.310104216861;PRDM1:-0.317230289433;HNF1A:-0.332079500781;CEBPA,B_DDIT3:-0.338266958342;POU1F1:-0.339612910385;TBX4,5:-0.363269330797;TFCP2:-0.382479993809;SPZ1:-0.4371961118;FOSL2:-0.437442528425;NRF1:-0.450340398172;ARID5B:-0.461588128335;ZNF238:-0.465873992024;EBF1:-0.484891385123;FOXL1:-0.518628998171;NKX2-1,4:-0.522514390441;FOS_FOS{B,L1}_JUN{B,D}:-0.533048500065;NKX2-3_NKX2-5:-0.537166290954;IKZF2:-0.542939518003;PAX4:-0.543272495746;RFX1:-0.546874902761;MYFfamily:-0.548400544237;HSF1,2:-0.59963430533;TOPORS:-0.604734791602;SOX17:-0.636612107152;BACH2:-0.639838734316;TP53:-0.646586936055;SRF:-0.668740980401;PAX8:-0.673932843945;REST:-0.685979918754;HIF1A:-0.692446373044;TEF:-0.716539522221;JUN:-0.720175971797;NKX3-2:-0.722567328466;XBP1:-0.728087007923;MYBL2:-0.738462591713;RXR{A,B,G}:-0.813100527352;NR1H4:-0.815920154601;ZNF384:-0.83585831506;MTF1:-0.844101214564;HOX{A5,B5}:-0.872095916672;NFE2:-0.874406622379;SOX2:-0.88617732225;HLF:-0.894652414959;DBP:-0.898151114473;RBPJ:-0.898780513254;MAFB:-0.903612714137;HOXA9_MEIS1:-0.928224436863;GCM1,2:-0.951247072539;POU6F1:-0.958015199739;EGR1..3:-0.977296848789;NFE2L2:-1.00247207148;STAT2,4,6:-1.07055996218;TBP:-1.11671671161;FOXM1:-1.12315875277;PATZ1:-1.14852132386;NR3C1:-1.1493230042;POU3F1..4:-1.16457650787;GATA4:-1.18875112817;MZF1:-1.19879539352;GZF1:-1.20538618915;MED-1{core}:-1.20812052858;EN1,2:-1.21364673394;PPARG:-1.23352783277;GFI1B:-1.26398118905;MAZ:-1.27757768662;UFEwm:-1.33150488521;MTE{core}:-1.33502244186;ZNF423:-1.34757588951;RREB1:-1.35456039694;ESRRA:-1.36696782749;NKX3-1:-1.38719509305;TEAD1:-1.41114736883;HMGA1,2:-1.44665665934;LHX3,4:-1.44817502763;HIC1:-1.46517601182;PITX1..3:-1.5028364847;GTF2I:-1.52460455167;KLF4:-1.53628570673;ZIC1..3:-1.59181678187;XCPE1{core}:-1.63955576791;ZBTB6:-1.6994959762;TFAP2B:-1.71186789502;TLX1..3_NFIC{dimer}:-1.7325262558;TFAP2{A,C}:-1.73298274685;TFDP1:-1.81029707668;SP1:-1.83836569562;FOXD3:-1.86294493895;PAX5:-1.86370101696;GTF2A1,2:-2.12722736404;NFE2L1:-2.20344996766;IKZF1:-2.33717859597;PAX1,9:-2.77328462782
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12189-129B2;search_select_hide=table117:FF:12189-129B2
}}
}}

Latest revision as of 18:33, 4 June 2020

Name:CD19+ B Cells (pluriselect), donor090309, donation1
Species:Human (Homo sapiens)
Library ID:CNhs12177,RDhi10007
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexNA
ageNA
cell typeb cell
cell lineNA
companyNA
collaborationMatched_genome_OSC(contact:Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
RNA-Seq  SAMD00013679
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12177 CAGE DRX008050 DRR008922
RDhi10007 RNA-Seq DRX012341 DRR013789
Accession ID Hg19

Library idBAMCTSS
CNhs12177 DRZ000347 DRZ001732
RDhi10007 DRZ002990
Accession ID Hg38

Library idBAMCTSS
CNhs12177 DRZ011697 DRZ013082
RDhi10007
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.126
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.245
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.345
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.293
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.441
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.532
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.655
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.298
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary1.451
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.432
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.343
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.655
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.442
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil1.063
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.457
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.235
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix1.063
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.788
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12177

Jaspar motifP-value
MA0002.24.30773e-7
MA0003.10.431
MA0004.10.403
MA0006.10.626
MA0007.10.801
MA0009.10.945
MA0014.10.828
MA0017.10.0194
MA0018.20.937
MA0019.10.822
MA0024.10.479
MA0025.10.343
MA0027.10.578
MA0028.10.0091
MA0029.10.854
MA0030.10.0625
MA0031.10.233
MA0035.20.148
MA0038.10.348
MA0039.20.864
MA0040.10.708
MA0041.10.134
MA0042.10.769
MA0043.10.856
MA0046.10.767
MA0047.20.145
MA0048.10.297
MA0050.15.0443e-9
MA0051.12.00821e-4
MA0052.10.335
MA0055.10.815
MA0057.10.922
MA0058.10.35
MA0059.10.195
MA0060.10.255
MA0061.14.29804e-4
MA0062.23.7232e-8
MA0065.20.0131
MA0066.10.118
MA0067.10.708
MA0068.10.367
MA0069.10.344
MA0070.10.512
MA0071.10.528
MA0072.10.418
MA0073.10.744
MA0074.10.653
MA0076.10.00119
MA0077.10.564
MA0078.10.774
MA0079.20.356
MA0080.22.70075e-11
MA0081.10.00161
MA0083.10.139
MA0084.10.294
MA0087.10.359
MA0088.10.135
MA0090.17.88899e-4
MA0091.10.216
MA0092.10.768
MA0093.10.513
MA0099.20.0857
MA0100.10.442
MA0101.10.0564
MA0102.20.923
MA0103.10.0143
MA0104.20.127
MA0105.11.61476e-7
MA0106.10.995
MA0107.10.0243
MA0108.21.06069e-6
MA0111.10.452
MA0112.20.00105
MA0113.10.288
MA0114.10.0535
MA0115.10.217
MA0116.18.5076e-6
MA0117.10.845
MA0119.10.957
MA0122.10.432
MA0124.10.884
MA0125.10.669
MA0131.10.355
MA0135.10.0158
MA0136.11.07114e-14
MA0137.20.742
MA0138.20.267
MA0139.10.209
MA0140.10.0156
MA0141.10.501
MA0142.10.0358
MA0143.10.5
MA0144.10.952
MA0145.10.784
MA0146.10.37
MA0147.10.123
MA0148.10.281
MA0149.10.0591
MA0150.10.962
MA0152.10.331
MA0153.10.0393
MA0154.12.39889e-4
MA0155.10.886
MA0156.17.79553e-10
MA0157.10.121
MA0159.10.0356
MA0160.10.3
MA0162.10.568
MA0163.17.6575e-11
MA0164.10.979
MA0258.10.0108
MA0259.10.542



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12177

Novel motifP-value
10.106
100.054
1000.602
1010.311
1020.99
1030.0546
1040.215
1050.213
1060.194
1070.947
1080.362
1090.058
110.0492
1100.14
1110.113
1120.221
1130.0471
1140.155
1150.702
1160.958
1170.0083
1180.26
1190.469
120.792
1200.388
1210.962
1220.616
1230.148
1240.03
1250.127
1260.124
1270.479
1280.703
1290.643
130.528
1300.459
1310.511
1320.579
1330.0108
1340.731
1350.796
1360.897
1370.182
1380.475
1390.045
140.434
1400.177
1410.0454
1420.485
1430.00538
1440.849
1450.269
1460.107
1470.203
1480.226
1490.172
150.0737
1500.51
1510.622
1520.983
1530.722
1540.987
1550.0273
1560.573
1570.266
1580.168
1590.102
160.619
1600.296
1610.0999
1620.964
1630.528
1640.646
1650.482
1660.703
1670.0573
1680.0533
1690.23
170.507
180.291
190.993
20.806
200.87
210.742
220.583
230.808
240.297
250.0491
260.132
270.145
280.53
290.141
30.0526
300.624
310.515
320.973
330.472
340.746
350.135
360.00986
370.11
380.359
390.756
40.469
400.115
410.121
420.175
430.0993
440.334
450.742
460.128
470.0695
480.123
490.0776
50.272
500.911
510.349
520.863
530.459
540.572
550.055
560.578
570.217
580.0207
590.208
60.943
600.266
610.0577
620.012
630.497
640.175
650.463
660.548
670.431
680.217
690.843
70.166
700.0315
710.0403
720.0966
730.532
740.126
750.0226
760.26
770.788
780.168
790.296
80.326
800.00748
810.186
820.0823
830.564
840.512
850.402
860.117
870.322
880.954
890.409
90.399
900.0128
910.463
920.509
930.781
940.0409
950.016
960.33
970.505
980.183
990.27



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12177


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000236 (B cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000025 (CD19-positive B cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

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