FFCP PHASE1:Hg19::chr12:94542430..94542458,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:94542430..94542458,+ to FFCP PHASE1:Hg19::chr12:94542430..94542458,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10154 | |EntrezGene=10154 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9106 | |HGNC=9106 | ||
|TSSclassifier=strong | |||
|UniProt=O60486 | |UniProt=O60486 | ||
|association_with_transcript=-40bp_to_ENST00000258526,NM_005761,uc001tdc.2_5end | |||
|cluster_id=chr12:94542430..94542458,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_3_at_PLXNC1_5end | |||
|id=chr12:94542430..94542458,+ | |||
|ontology_enrichment_celltype=CL:0000738!6.77e-43!140;CL:0000037!9.74e-39!172;CL:0000566!9.74e-39!172;CL:0000988!3.87e-36!182;CL:0002032!9.51e-36!165;CL:0000837!9.51e-36!165;CL:0002087!4.40e-35!119;CL:0002031!5.38e-33!124;CL:0000766!9.25e-29!76;CL:0002057!1.46e-26!42;CL:0000557!8.77e-26!71;CL:0002009!2.22e-25!65;CL:0000763!3.23e-25!112;CL:0000049!3.23e-25!112;CL:0002194!1.11e-24!63;CL:0000576!1.11e-24!63;CL:0000040!1.11e-24!63;CL:0000559!1.11e-24!63;CL:0000839!1.97e-23!70;CL:0000860!3.59e-23!45;CL:0000542!1.36e-09!53;CL:0000051!1.36e-09!53;CL:0000838!2.27e-09!52;CL:0002393!1.45e-07!9;CL:0002397!1.45e-07!9;CL:0000945!3.67e-07!24;CL:0000826!3.67e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.14e-25;39!CL:0000234;1.14e-25;39!CL:0000860;1.20e-24;33!CL:0002057;1.20e-24;33!CL:0000576;6.57e-23;48!CL:0000766;3.87e-20;69!CL:0000738;4.27e-12;136!CL:0002087;7.18e-12;104!CL:0000763;1.24e-10;100!CL:0000945;2.57e-08;24!CL:0000236;2.44e-07;13!CL:0000988;2.77e-07;177!CL:0002393;3.14e-07;6!CL:0002397;3.14e-07;6!CL:0000235;3.52e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.90e-50,136;CL:0000766,1.05e-43,72;CL:0000037,1.45e-42,168;CL:0000473,7.95e-42,48;CL:0000234,7.95e-42,48;CL:0002087,1.35e-40,115;CL:0000557,3.08e-40,67;CL:0000988,3.33e-40,177;CL:0002032,2.72e-39,161;CL:0000837,2.72e-39,161;CL:0002009,2.79e-39,61;CL:0002194,2.48e-38,59;CL:0000576,2.48e-38,59;CL:0000040,2.48e-38,59;CL:0000559,2.48e-38,59;CL:0002031,2.95e-38,120;CL:0000839,2.17e-36,66;CL:0000860,4.65e-36,42;CL:0002057,4.65e-36,42;CL:0000763,2.30e-34,108;CL:0000049,2.30e-34,108;CL:0002393,7.74e-10,9;CL:0002397,7.74e-10,9;CL:0000945,1.71e-08,24;CL:0000826,1.71e-08,24;CL:0000236,6.95e-08,14;CL:0000235,4.44e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002057;2.09e-25;42!CL:0000049;1.14e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.02e-33!102;UBERON:0003061!3.02e-33!102;UBERON:0002193!8.36e-29!112;UBERON:0002371!3.26e-22!80;UBERON:0007023!7.78e-20!115;UBERON:0001474!1.36e-19!86;UBERON:0002405!7.75e-19!115;UBERON:0004765!1.40e-16!101;UBERON:0001434!1.40e-16!101;UBERON:0000178!6.38e-10!15;UBERON:0000179!6.38e-10!15;UBERON:0000463!6.38e-10!15;UBERON:0001049!4.08e-09!57;UBERON:0005068!4.08e-09!57;UBERON:0006241!4.08e-09!57;UBERON:0007135!4.08e-09!57;UBERON:0001017!1.75e-08!82;UBERON:0005743!6.54e-08!86;UBERON:0002616!7.01e-08!59;UBERON:0000955!1.32e-07!69;UBERON:0006238!1.32e-07!69;UBERON:0002780!2.27e-07!41;UBERON:0001890!2.27e-07!41;UBERON:0006240!2.27e-07!41;UBERON:0000073!2.93e-07!94;UBERON:0001016!2.93e-07!94;UBERON:0003080!6.26e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.82e-12;15!UBERON:0000179;2.82e-12;15!UBERON:0000463;2.82e-12;15!UBERON:0002390;1.58e-09;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,6.87e-50,98;UBERON:0003061,6.87e-50,98;UBERON:0002193,2.61e-45,108;UBERON:0002371,1.54e-35,76;UBERON:0002405,2.55e-34,93;UBERON:0001474,3.53e-31,82;UBERON:0004765,2.53e-26,90;UBERON:0001434,2.88e-23,100;UBERON:0003081,4.85e-14,203;UBERON:0000178,4.62e-12,15;UBERON:0000179,4.62e-12,15;UBERON:0000463,4.62e-12,15;UBERON:0007023,8.16e-10,114;UBERON:0002204,3.98e-09,167 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,2.53299878168311,0,0,0,0,0,0,0.123766352960047,0,1.34465029290355,0,0,0,0.123121058076788,0,0,0.85870796139317,0,0.502170558379211,3.66784347590166,3.28402357799783,2.20390187678302,1.18009283054671,0.383829398097213,3.8704030829019,0,0,0,0.387336002901508,0,3.22960483268332,9.97191735357379,14.6397446653203,13.237663113667,17.9132379391939,24.2920249514235,19.8333187078324,6.25212426752128,4.91238726795452,5.33684934613196,5.81072592264212,5.75635043230556,5.88442104700697,5.46615545412086,2.30544635876191,2.60130452877444,8.96338769915208,5.16387746867061,5.41705946377367,6.77672422353377,3.547779950752,1.79778787556068,9.48860066349798,5.77672248736969,5.11469700639233,4.94776950280074,1.99463657621632,2.98357325372886,8.41606792022894,3.97169657283798,7.4738669879469,4.77372463987812,2.60741459210101,1.52032191293582,9.6863920421339,4.41933163185078,5.37986058649504,6.33765858935825,5.31510749912609,5.87044207423452,9.66026227859858,8.10955221344134,8.83990726833941,6.27028036230747,8.35450044236178,4.93193215164512,3.51992488922645,2.18455444504853,2.66852776159066,2.13365111283254,1.60158394814405,1.72425731986345,2.64417949113945,1.90810750907073,1.1384259382189,1.76171156811282,1.52909291250092,2.64342657158052,3.92355994087075,4.21414535640123,0.786839080455332,1.17903228824749,0.616804496998528,0.334372990781356,0.32592226663359,0,0,0.222820913770347,0,0.443067789167242,0.270803863765016,0,0.520237390239513,1.97325485524411,1.65810010671509,1.15921234294021,0.14828656316206,0.267540828089713,1.04535523804977,0.453237370790265,1.53288197440768,0,0.506039384039006,1.27426165729639,0,0.950452044448374,0.602300476311091,0.76791966692651,1.24930726552346,2.13099526839615,0.821127996921047,0.80642697289893,1.33720097891754,0.868946423296794,4.87613732627923,2.01210257911091,0.383587685530591,0,0,0,0,0,0.0945348171640679,0,0.087834785693126,1.83370705696798,0,0,0.649094787309367,0.522389211897802,2.12732736830184,3.33886874027479,1.14398982156026,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,28.9916918359339,38.7780264148325,0,0,0.12663051166458,0,0,0.354668382198357,0,0,0,1.55605517699883,0,0,0.454072282934794,0,0,0,0,0,0,0,0,0,0,0.103325781175765,2.37600571456411,2.71993622206413,0,0,0,0,0,0.438977620880838,0.30648779579902,1.95309476578576,0,3.04962380671065,1.70845911054854,0.423863802319124,0.300091096084402,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0.757301322732344,0.828449087780694,0,3.19508633264953,0.403008392910561,0,0,0,0,0.121973706129595,0.265059536642971,0.232387885739037,0.414644220061482,0,1.09493207722749,1.56449532329816,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47008711385542,0,0.982827216677626,0.590789906681404,0.441463099414651,0.245976877086227,0,0,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,11.8184162921951,13.1042388477973,12.7822799568306,0,0,0,0,0,0,0,0,2.90259361757081,8.35895729818376,1.13618190083742,8.95320309519583,4.96584953225761,7.03304683260282,0,4.31875469353959,9.61097785100536,11.1472308725925,0,0.43596006883328,0,0,0,0,0.531876233169741,0,0,0,0,0.714889968290738,0,0,0,0.355391948742546,0,0,0,0,8.51366464488333,9.04062764577828,2.10833939483032,0.239624855491583,0,0,0,0,0.179060963239896,0.224170287987055,1.97030760201927,0.215627574859517,1.28343036279748,1.27047312111232,1.30139853857622,1.54657762555539,1.67516265334349,0,43.4424073889366,47.865833472644,88.2705043618756,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0.184369168541703,0.173767228936166,0,0,5.37596867919507,6.03999762292127,4.802740101155,0,0,0,0.496215615637554,0.153461973288062,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393373244878272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,1.13345112812495,0,0.082509499920588,0,0,0,0,0,0,0,0.966782203814463,0.145016693914229,0.255679882248303,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0.316379424718726,0.190630193923825,0,3.85145089230528,0,0,0.719489830333259,0.274537029736055,0.117812402345686,0,0,0,3.41343617362713,0,0,0,0,0,0,0,0,0,1.9676842561399,0,0,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0,0,0,0,1.31801321087491,0,0,0,0,8.11916174771471,7.64637207142375,9.68400218196076,9.05280746739598,11.9295059194996,16.2118327798179,8.64050299580984,5.55187623405989,0,0,0,1.30062222588003,1.15415370381156,0.640276590135727,0.797131363644112,0,0.191505370132367,0,0,0.561594356226918,1.36940807419915,0.783399478865116,2.50634477090067,0.169291777801603,1.2847046008296,0.201799707191048,0.851692475380653,2.06103206853459,0,0,0,0.586164286206121,0,0,0.811367035427949,0,0,0,0.73254089635947,0,1.5602073798847,0,0,0,0,0.994147647766298,1.54736358051564,0.333926115068718,0.329607748453519,1.05562704063997,1.39473591775749,2.48655523978033,2.77126022639704,0.920418142519393,2.46169610922139,0,0,0,1.02314474045374,1.28236427328014,9.57932369387759,0,0.969332746095218,0.74214478529481,3.99227596002388,0,0,0,0,0,0,0,0,1.562624954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| ||
|short_description=p3@PLXNC1 | |||
}} | }} |
Latest revision as of 00:56, 16 September 2015
Short description: | p3@PLXNC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PLXNC1_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -40bp_to_ENST00000258526, NM_005761, uc001tdc.2_5end |
EntrezGene: | PLXNC1 |
HGNC: | 9106 |
UniProt: | O60486 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.90e-50 | 136 |
myeloid leukocyte | 1.05e-43 | 72 |
hematopoietic stem cell | 1.45e-42 | 168 |
defensive cell | 7.95e-42 | 48 |
phagocyte | 7.95e-42 | 48 |
nongranular leukocyte | 1.35e-40 | 115 |
granulocyte monocyte progenitor cell | 3.08e-40 | 67 |
hematopoietic cell | 3.33e-40 | 177 |
hematopoietic oligopotent progenitor cell | 2.72e-39 | 161 |
hematopoietic multipotent progenitor cell | 2.72e-39 | 161 |
macrophage dendritic cell progenitor | 2.79e-39 | 61 |
monopoietic cell | 2.48e-38 | 59 |
monocyte | 2.48e-38 | 59 |
monoblast | 2.48e-38 | 59 |
promonocyte | 2.48e-38 | 59 |
hematopoietic lineage restricted progenitor cell | 2.95e-38 | 120 |
myeloid lineage restricted progenitor cell | 2.17e-36 | 66 |
classical monocyte | 4.65e-36 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.65e-36 | 42 |
myeloid cell | 2.30e-34 | 108 |
common myeloid progenitor | 2.30e-34 | 108 |
intermediate monocyte | 7.74e-10 | 9 |
CD14-positive, CD16-positive monocyte | 7.74e-10 | 9 |
lymphocyte of B lineage | 1.71e-08 | 24 |
pro-B cell | 1.71e-08 | 24 |
B cell | 6.95e-08 | 14 |
macrophage | 4.44e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 6.87e-50 | 98 |
blood island | 6.87e-50 | 98 |
hemolymphoid system | 2.61e-45 | 108 |
bone marrow | 1.54e-35 | 76 |
immune system | 2.55e-34 | 93 |
bone element | 3.53e-31 | 82 |
skeletal element | 2.53e-26 | 90 |
skeletal system | 2.88e-23 | 100 |
lateral plate mesoderm | 4.85e-14 | 203 |
blood | 4.62e-12 | 15 |
haemolymphatic fluid | 4.62e-12 | 15 |
organism substance | 4.62e-12 | 15 |
adult organism | 8.16e-10 | 114 |
musculoskeletal system | 3.98e-09 | 167 |