FFCP PHASE1:Hg19::chr13:44453976..44454026,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:44453976..44454026,+ to FFCP PHASE1:Hg19::chr13:44453976..44454026,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=144811 | |EntrezGene=144811 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26789 | |HGNC=26789 | ||
|TSSclassifier=strong | |||
|UniProt=Q8IV20,Q7Z395 | |UniProt=Q8IV20,Q7Z395 | ||
|association_with_transcript=7bp_to_ENST00000325686,NM_153218,uc001uzf.3_5end | |||
|cluster_id=chr13:44453976..44454026,+ | |||
|description=CAGE_peak_3_at_LACC1_5end | |||
|id=chr13:44453976..44454026,+ | |||
|ontology_enrichment_celltype=CL:0000557!3.94e-11!71;CL:0002009!1.66e-10!65;CL:0002057!2.35e-10!42;CL:0002194!2.85e-10!63;CL:0000576!2.85e-10!63;CL:0000040!2.85e-10!63;CL:0000559!2.85e-10!63;CL:0000839!8.04e-10!70;CL:0000766!2.30e-08!76;CL:0000860!4.23e-08!45 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.37e-15;39!CL:0000234;3.37e-15;39!CL:0000860;9.02e-15;33!CL:0002057;9.02e-15;33!CL:0000576;1.70e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.54e-13,48;CL:0000234,3.54e-13,48;CL:0000557,6.26e-13,67;CL:0002009,2.70e-12,61;CL:0002194,4.69e-12,59;CL:0000576,4.69e-12,59;CL:0000040,4.69e-12,59;CL:0000559,4.69e-12,59;CL:0000839,9.43e-12,66;CL:0000860,4.13e-10,42;CL:0002057,4.13e-10,42;CL:0000766,1.03e-09,72 | |||
|ontology_enrichment_development_v019=CL:0002057;2.85e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;2.93e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.09e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002204!1.01e-11!167;UBERON:0000062!5.52e-11!511;UBERON:0004765!7.44e-11!101;UBERON:0001434!7.44e-11!101;UBERON:0002371!2.59e-10!80;UBERON:0000467!3.48e-10!625;UBERON:0000480!4.72e-10!626;UBERON:0001474!8.72e-10!86;UBERON:0000468!3.46e-09!659;UBERON:0000926!1.36e-08!448;UBERON:0004120!1.36e-08!448;UBERON:0006603!1.36e-08!448;UBERON:0000923!1.60e-08!604;UBERON:0005291!1.60e-08!604;UBERON:0006598!1.60e-08!604;UBERON:0002532!1.60e-08!604;UBERON:0002050!2.29e-08!605;UBERON:0005423!2.29e-08!605;UBERON:0000922!4.12e-08!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.23e-11,76;UBERON:0002204,2.83e-11,167;UBERON:0001474,5.81e-11,82;UBERON:0004765,1.88e-10,90;UBERON:0001434,4.07e-10,100;UBERON:0005423,4.76e-09,581;UBERON:0000922,6.08e-09,592;UBERON:0002050,6.41e-09,564;UBERON:0000926,7.62e-09,315;UBERON:0004120,7.62e-09,315;UBERON:0006603,7.62e-09,315;UBERON:0000923,3.10e-08,560;UBERON:0010316,3.10e-08,560;UBERON:0005291,3.10e-08,560;UBERON:0006598,3.10e-08,560;UBERON:0010317,3.10e-08,560;UBERON:0002532,3.10e-08,560;UBERON:0002405,1.44e-07,93 | |||
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| ||
|short_description=p3@LACC1 | |||
}} | }} |
Latest revision as of 10:41, 17 September 2015
Short description: | p3@LACC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LACC1_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_ENST00000325686, NM_153218, uc001uzf.3_5end |
EntrezGene: | LACC1 |
HGNC: | 26789 |
UniProt: | Q8IV20Q7Z395 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.54e-13 | 48 |
phagocyte | 3.54e-13 | 48 |
granulocyte monocyte progenitor cell | 6.26e-13 | 67 |
macrophage dendritic cell progenitor | 2.70e-12 | 61 |
monopoietic cell | 4.69e-12 | 59 |
monocyte | 4.69e-12 | 59 |
monoblast | 4.69e-12 | 59 |
promonocyte | 4.69e-12 | 59 |
myeloid lineage restricted progenitor cell | 9.43e-12 | 66 |
classical monocyte | 4.13e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.13e-10 | 42 |
myeloid leukocyte | 1.03e-09 | 72 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.23e-11 | 76 |
musculoskeletal system | 2.83e-11 | 167 |
bone element | 5.81e-11 | 82 |
skeletal element | 1.88e-10 | 90 |
skeletal system | 4.07e-10 | 100 |
developing anatomical structure | 4.76e-09 | 581 |
embryo | 6.08e-09 | 592 |
embryonic structure | 6.41e-09 | 564 |
mesoderm | 7.62e-09 | 315 |
mesoderm-derived structure | 7.62e-09 | 315 |
presumptive mesoderm | 7.62e-09 | 315 |
germ layer | 3.10e-08 | 560 |
germ layer / neural crest | 3.10e-08 | 560 |
embryonic tissue | 3.10e-08 | 560 |
presumptive structure | 3.10e-08 | 560 |
germ layer / neural crest derived structure | 3.10e-08 | 560 |
epiblast (generic) | 3.10e-08 | 560 |
immune system | 1.44e-07 | 93 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.09e-07 | 14 |