FFCP PHASE1:Hg19::chr16:88729473..88729561,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:88729473..88729561,- to FFCP PHASE1:Hg19::chr16:88729473..88729561,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4597 | |EntrezGene=4597 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7529 | |HGNC=7529 | ||
|TSSclassifier=strong | |||
|UniProt=P53602,E7ES45 | |UniProt=P53602,E7ES45 | ||
|association_with_transcript=0bp_to_ENST00000301012,ENST00000378400,NM_002461,uc002flg.1_5end | |||
|cluster_id=chr16:88729473..88729561,- | |||
|coexpression_cluster_id=C3237 | |||
|description=CAGE_peak_1_at_MVD_5end | |||
|id=chr16:88729473..88729561,- | |||
|ontology_enrichment_celltype=CL:0002371!1.64e-14!591;CL:0000144!4.41e-11!625;CL:0000220!1.40e-10!246;CL:0000183!2.66e-10!59;CL:0002321!2.80e-10!248;CL:0000548!6.50e-10!679;CL:0000004!6.50e-10!679;CL:0000255!6.50e-10!679;CL:0000012!1.40e-09!682;CL:0000393!2.53e-09!60;CL:0000211!2.53e-09!60;CL:0000187!3.39e-08!54;CL:1000449!6.48e-08!16;CL:0000222!9.99e-08!119;CL:0000680!2.07e-07!57;CL:0000056!2.07e-07!57;CL:0000355!2.07e-07!57;CL:0000003!2.28e-07!722;CL:0002681!5.58e-07!13;CL:0002584!5.58e-07!13;CL:1000507!8.03e-07!12;CL:1000494!8.03e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000449;9.38e-08;15!CL:0002681;7.82e-07;12!CL:0002584;7.82e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,9.92e-11,250;CL:0000393,1.63e-09,61;CL:0000211,1.63e-09,61;CL:0000187,2.19e-08,55;CL:0000222,3.44e-08,121;CL:1000449,9.03e-08,15;CL:0000680,1.36e-07,58;CL:0000056,1.36e-07,58;CL:0000355,1.36e-07,58;CL:0002681,7.63e-07,12;CL:0002584,7.63e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!5.05e-19!312;UBERON:0000483!2.28e-18!309;UBERON:0005256!3.13e-13!143;UBERON:0000477!1.14e-11!286;UBERON:0000481!1.23e-11!347;UBERON:0000914!2.31e-11!83;UBERON:0002329!2.31e-11!83;UBERON:0003077!2.31e-11!83;UBERON:0003059!2.31e-11!83;UBERON:0007282!2.31e-11!83;UBERON:0009618!2.31e-11!83;UBERON:0007285!2.31e-11!83;UBERON:0000475!3.28e-11!365;UBERON:0000486!7.07e-10!82;UBERON:0002100!8.26e-10!216;UBERON:0000025!8.73e-10!194;UBERON:0004290!2.88e-09!70;UBERON:0000064!4.54e-09!219;UBERON:0003914!1.89e-08!118;UBERON:0004111!4.96e-08!241;UBERON:0004211!6.48e-08!16;UBERON:0001285!6.48e-08!16;UBERON:0007684!6.48e-08!16;UBERON:0003220!6.48e-08!16;UBERON:0004208!6.48e-08!16;UBERON:0000490!1.90e-07!138;UBERON:0001225!5.58e-07!13;UBERON:0008987!5.58e-07!13;UBERON:0006555!5.60e-07!17;UBERON:0005103!5.60e-07!17;UBERON:0000083!5.60e-07!17;UBERON:0009201!5.60e-07!17;UBERON:0004819!5.60e-07!17;UBERON:0006553!5.60e-07!17;UBERON:0003074!5.60e-07!17;UBERON:0003060!5.60e-07!17;UBERON:0009773!8.03e-07!12;UBERON:0001231!8.03e-07!12;UBERON:0004810!8.03e-07!12;UBERON:0000353!9.00e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;9.38e-08;15!UBERON:0004819;9.38e-08;15!UBERON:0001285;9.38e-08;15!UBERON:0007684;9.38e-08;15!UBERON:0001225;7.82e-07;12!UBERON:0008987;7.82e-07;12!UBERON:0000353;9.89e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.66e-20,309;UBERON:0000483,1.26e-19,306;UBERON:0007503,1.11e-11,78;UBERON:0000486,4.58e-10,83;UBERON:0000490,6.03e-10,148;UBERON:0000025,1.11e-09,192;UBERON:0003077,1.82e-09,72;UBERON:0007285,1.82e-09,72;UBERON:0007524,1.86e-09,73;UBERON:0002329,1.86e-09,71;UBERON:0003059,1.86e-09,71;UBERON:0007282,1.86e-09,71;UBERON:0004290,1.86e-09,71;UBERON:0009618,1.86e-09,71;UBERON:0005256,1.22e-08,122;UBERON:0003914,2.78e-08,117;UBERON:0010314,3.51e-08,132;UBERON:0003104,5.07e-08,160;UBERON:0009142,5.07e-08,160;UBERON:0004111,5.85e-08,240;UBERON:0004211,9.03e-08,15;UBERON:0009773,9.03e-08,15;UBERON:0001231,9.03e-08,15;UBERON:0001285,9.03e-08,15;UBERON:0007684,9.03e-08,15;UBERON:0004208,9.03e-08,15;UBERON:0002100,1.72e-07,199;UBERON:0010371,3.47e-07,104;UBERON:0001225,7.63e-07,12;UBERON:0008987,7.63e-07,12;UBERON:0006555,8.25e-07,16;UBERON:0004819,8.25e-07,16 | |||
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| ||
|short_description=p1@MVD | |||
}} | }} |
Latest revision as of 09:54, 18 September 2015
Short description: | p1@MVD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MVD_5end |
Coexpression cluster: | C3237_Alveolar_Keratocytes_Bronchial_Hepatic_Adipocyte_Mammary_Mesenchymal |
Association with transcript: | 0bp_to_ENST00000301012, ENST00000378400, NM_002461, uc002flg.1_5end |
EntrezGene: | MVD |
HGNC: | 7529 |
UniProt: | P53602E7ES45 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 9.92e-11 | 250 |
electrically responsive cell | 1.63e-09 | 61 |
electrically active cell | 1.63e-09 | 61 |
muscle cell | 2.19e-08 | 55 |
mesodermal cell | 3.44e-08 | 121 |
epithelial cell of nephron | 9.03e-08 | 15 |
muscle precursor cell | 1.36e-07 | 58 |
myoblast | 1.36e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.36e-07 | 58 |
kidney cortical cell | 7.63e-07 | 12 |
renal cortical epithelial cell | 7.63e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cell layer | 2.66e-20 | 309 |
epithelium | 1.26e-19 | 306 |
epithelial vesicle | 1.11e-11 | 78 |
multilaminar epithelium | 4.58e-10 | 83 |
unilaminar epithelium | 6.03e-10 | 148 |
tube | 1.11e-09 | 192 |
paraxial mesoderm | 1.82e-09 | 72 |
presumptive paraxial mesoderm | 1.82e-09 | 72 |
dense mesenchyme tissue | 1.86e-09 | 73 |
somite | 1.86e-09 | 71 |
presomitic mesoderm | 1.86e-09 | 71 |
presumptive segmental plate | 1.86e-09 | 71 |
dermomyotome | 1.86e-09 | 71 |
trunk paraxial mesoderm | 1.86e-09 | 71 |
trunk mesenchyme | 1.22e-08 | 122 |
epithelial tube | 2.78e-08 | 117 |
structure with developmental contribution from neural crest | 3.51e-08 | 132 |
mesenchyme | 5.07e-08 | 160 |
entire embryonic mesenchyme | 5.07e-08 | 160 |
anatomical conduit | 5.85e-08 | 240 |
nephron epithelium | 9.03e-08 | 15 |
renal tubule | 9.03e-08 | 15 |
nephron tubule | 9.03e-08 | 15 |
nephron | 9.03e-08 | 15 |
uriniferous tubule | 9.03e-08 | 15 |
nephrogenic mesenchyme | 9.03e-08 | 15 |
trunk | 1.72e-07 | 199 |
ecto-epithelium | 3.47e-07 | 104 |
cortex of kidney | 7.63e-07 | 12 |
renal parenchyma | 7.63e-07 | 12 |
excretory tube | 8.25e-07 | 16 |
kidney epithelium | 8.25e-07 | 16 |