FFCP PHASE1:Hg19::chr19:36605752..36605833,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:36605752..36605833,- to FFCP PHASE1:Hg19::chr19:36605752..36605833,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5438 | |EntrezGene=5438 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9196 | |HGNC=9196 | ||
|TSSclassifier=strong | |||
|UniProt=P36954 | |UniProt=P36954 | ||
|association_with_transcript=372bp_to_ENST00000221859,NM_006233,uc002ode.2,uc002odf.2_5end | |||
|cluster_id=chr19:36605752..36605833,- | |||
|description=CAGE_peak_1_at_POLR2I_5end | |||
|id=chr19:36605752..36605833,- | |||
|ontology_enrichment_celltype=CL:0000066!2.93e-08!254;CL:0002321!3.51e-08!248;CL:0000220!7.94e-08!246 | |||
|ontology_enrichment_celltype_v019=CL:1000449;5.03e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.51e-08,253;CL:0002321,3.12e-08,250;CL:1000449,4.80e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000483!2.40e-19!309;UBERON:0000119!3.60e-19!312;UBERON:0000481!7.54e-17!347;UBERON:0000025!3.19e-14!194;UBERON:0000475!1.50e-13!365;UBERON:0000064!1.90e-12!219;UBERON:0004111!1.29e-10!241;UBERON:0000477!4.77e-10!286;UBERON:0003104!2.39e-09!238;UBERON:0009142!2.39e-09!238;UBERON:0003103!3.20e-09!69;UBERON:0002100!7.49e-09!216;UBERON:0002346!1.82e-08!90;UBERON:0003075!2.20e-08!86;UBERON:0007284!2.20e-08!86;UBERON:0005256!2.37e-08!143;UBERON:0005177!5.44e-08!107;UBERON:0000924!1.11e-07!173;UBERON:0006601!1.11e-07!173;UBERON:0009569!1.53e-07!113;UBERON:0004121!1.55e-07!169;UBERON:0003914!3.34e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.03e-07;15!UBERON:0004819;5.03e-07;15!UBERON:0001285;5.03e-07;15!UBERON:0007684;5.03e-07;15!UBERON:0006554;5.33e-07;30!UBERON:0001008;5.33e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,6.70e-20,306;UBERON:0000119,1.02e-19,309;UBERON:0000025,3.53e-14,192;UBERON:0010314,2.17e-11,132;UBERON:0004111,8.78e-11,240;UBERON:0010371,1.43e-09,104;UBERON:0003103,2.04e-09,68;UBERON:0003104,4.21e-09,160;UBERON:0009142,4.21e-09,160;UBERON:0002346,7.12e-09,86;UBERON:0003075,8.34e-09,82;UBERON:0007284,8.34e-09,82;UBERON:0002100,1.28e-08,199;UBERON:0007503,3.60e-08,78;UBERON:0004121,7.39e-08,171;UBERON:0000924,7.39e-08,171;UBERON:0006601,7.39e-08,171;UBERON:0005177,1.05e-07,101;UBERON:0003914,2.63e-07,117;UBERON:0009569,2.67e-07,112;UBERON:0004211,4.80e-07,15;UBERON:0009773,4.80e-07,15;UBERON:0001231,4.80e-07,15;UBERON:0001285,4.80e-07,15;UBERON:0007684,4.80e-07,15;UBERON:0004208,4.80e-07,15;UBERON:0006555,7.05e-07,16;UBERON:0004819,7.05e-07,16;UBERON:0000073,9.00e-07,53;UBERON:0002616,9.00e-07,53 | |||
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| ||
|short_description=p1@POLR2I | |||
}} | }} |
Latest revision as of 15:39, 17 September 2015
Short description: | p1@POLR2I |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_POLR2I_5end |
Coexpression cluster: | NA |
Association with transcript: | 372bp_to_ENST00000221859, NM_006233, uc002ode.2, uc002odf.2_5end |
EntrezGene: | POLR2I |
HGNC: | 9196 |
UniProt: | P36954 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.51e-08 | 253 |
embryonic cell | 3.12e-08 | 250 |
epithelial cell of nephron | 4.80e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
epithelium | 6.70e-20 | 306 |
cell layer | 1.02e-19 | 309 |
tube | 3.53e-14 | 192 |
structure with developmental contribution from neural crest | 2.17e-11 | 132 |
anatomical conduit | 8.78e-11 | 240 |
ecto-epithelium | 1.43e-09 | 104 |
compound organ | 2.04e-09 | 68 |
mesenchyme | 4.21e-09 | 160 |
entire embryonic mesenchyme | 4.21e-09 | 160 |
neurectoderm | 7.12e-09 | 86 |
neural plate | 8.34e-09 | 82 |
presumptive neural plate | 8.34e-09 | 82 |
trunk | 1.28e-08 | 199 |
epithelial vesicle | 3.60e-08 | 78 |
ectoderm-derived structure | 7.39e-08 | 171 |
ectoderm | 7.39e-08 | 171 |
presumptive ectoderm | 7.39e-08 | 171 |
trunk region element | 1.05e-07 | 101 |
epithelial tube | 2.63e-07 | 117 |
subdivision of trunk | 2.67e-07 | 112 |
nephron epithelium | 4.80e-07 | 15 |
renal tubule | 4.80e-07 | 15 |
nephron tubule | 4.80e-07 | 15 |
nephron | 4.80e-07 | 15 |
uriniferous tubule | 4.80e-07 | 15 |
nephrogenic mesenchyme | 4.80e-07 | 15 |
excretory tube | 7.05e-07 | 16 |
kidney epithelium | 7.05e-07 | 16 |
regional part of nervous system | 9.00e-07 | 53 |
regional part of brain | 9.00e-07 | 53 |