FFCP PHASE1:Hg19::chr1:150337100..150337120,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:150337100..150337120,+ to FFCP PHASE1:Hg19::chr1:150337100..150337120,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23248 | |EntrezGene=23248 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29039 | |HGNC=29039 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-5bp_to_ENST00000401000_5end | |||
|cluster_id=chr1:150337100..150337120,+ | |||
|description=CAGE_peak_4_at_RPRD2_5end | |||
|id=chr1:150337100..150337120,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,8.78e-07,53;CL:0000051,8.78e-07,53 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!2.72e-07!143;DOID:305!3.22e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!5.67e-10!22;UBERON:0001950!1.80e-09!20;UBERON:0001869!5.34e-09!32;UBERON:0001893!1.55e-08!34;UBERON:0003080!2.49e-08!42;UBERON:0007023!2.54e-08!115;UBERON:0000956!3.76e-08!25;UBERON:0000203!3.76e-08!25;UBERON:0002791!4.22e-08!33;UBERON:0002780!5.11e-08!41;UBERON:0001890!5.11e-08!41;UBERON:0006240!5.11e-08!41;UBERON:0001049!8.24e-08!57;UBERON:0005068!8.24e-08!57;UBERON:0006241!8.24e-08!57;UBERON:0007135!8.24e-08!57;UBERON:0000073!1.47e-07!94;UBERON:0001016!1.47e-07!94;UBERON:0000955!1.75e-07!69;UBERON:0006238!1.75e-07!69;UBERON:0001017!2.80e-07!82;UBERON:0002020!3.32e-07!34;UBERON:0003528!3.32e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;6.97e-11;22!UBERON:0001950;1.67e-10;20!UBERON:0001869;1.85e-09;32!UBERON:0000956;4.71e-09;25!UBERON:0000203;4.71e-09;25!UBERON:0001893;7.95e-09;34!UBERON:0002791;1.87e-08;32!UBERON:0003528;1.61e-07;34!UBERON:0002020;1.61e-07;34!UBERON:0002780;3.35e-07;41!UBERON:0001890;3.35e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,7.92e-11,22;UBERON:0001950,2.82e-10,20;UBERON:0001869,1.07e-09,32;UBERON:0001893,6.14e-09,34;UBERON:0000956,8.53e-09,25;UBERON:0000203,8.53e-09,25;UBERON:0002791,1.52e-08,32;UBERON:0002780,1.68e-08,41;UBERON:0001890,1.68e-08,41;UBERON:0003080,1.68e-08,41;UBERON:0006240,1.68e-08,41;UBERON:0001016,2.75e-08,89;UBERON:0007023,3.14e-08,114;UBERON:0000073,3.80e-08,53;UBERON:0002616,3.80e-08,53;UBERON:0000955,1.19e-07,68;UBERON:0006238,1.19e-07,68;UBERON:0001049,1.40e-07,56;UBERON:0005068,1.40e-07,56;UBERON:0006241,1.40e-07,56;UBERON:0007135,1.40e-07,56;UBERON:0003528,2.29e-07,34;UBERON:0002020,2.29e-07,34;UBERON:0001017,2.68e-07,81 | |||
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| ||
|short_description=p4@RPRD2 | |||
}} | }} |
Latest revision as of 22:08, 16 September 2015
Short description: | p4@RPRD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RPRD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -5bp_to_ENST00000401000_5end |
EntrezGene: | RPRD2 |
HGNC: | 29039 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 8.78e-07 | 53 |
common lymphoid progenitor | 8.78e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 7.92e-11 | 22 |
neocortex | 2.82e-10 | 20 |
cerebral hemisphere | 1.07e-09 | 32 |
telencephalon | 6.14e-09 | 34 |
cerebral cortex | 8.53e-09 | 25 |
pallium | 8.53e-09 | 25 |
regional part of telencephalon | 1.52e-08 | 32 |
regional part of forebrain | 1.68e-08 | 41 |
forebrain | 1.68e-08 | 41 |
anterior neural tube | 1.68e-08 | 41 |
future forebrain | 1.68e-08 | 41 |
nervous system | 2.75e-08 | 89 |
adult organism | 3.14e-08 | 114 |
regional part of nervous system | 3.80e-08 | 53 |
regional part of brain | 3.80e-08 | 53 |
brain | 1.19e-07 | 68 |
future brain | 1.19e-07 | 68 |
neural tube | 1.40e-07 | 56 |
neural rod | 1.40e-07 | 56 |
future spinal cord | 1.40e-07 | 56 |
neural keel | 1.40e-07 | 56 |
brain grey matter | 2.29e-07 | 34 |
gray matter | 2.29e-07 | 34 |
central nervous system | 2.68e-07 | 81 |