FFCP PHASE1:Hg19::chr1:207206020..207206050,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:207206020..207206050,- to FFCP PHASE1:Hg19::chr1:207206020..207206050,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79098 | |EntrezGene=79098 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28667 | |HGNC=28667 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BW04 | |UniProt=Q9BW04 | ||
|association_with_transcript=41bp_to_ENST00000359470_5end | |||
|cluster_id=chr1:207206020..207206050,- | |||
|coexpression_cluster_id=C1844 | |||
|description=CAGE_peak_1_at_C1orf116_5end | |||
|id=chr1:207206020..207206050,- | |||
|ontology_enrichment_celltype=CL:0000066!5.34e-34!254;CL:0002076!5.29e-25!43;CL:0000223!2.21e-21!59;CL:0002251!1.01e-12!21;CL:0002368!7.67e-11!13;CL:0002159!8.79e-08!13;CL:0002202!2.99e-07!9;CL:0002632!2.99e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.06e-22;42!CL:0002251;2.11e-16;20!CL:0002368;4.89e-14;13!CL:0002159;2.32e-09;14!CL:0002202;2.86e-09;9!CL:0002632;2.86e-09;9!CL:1000507;1.26e-08;10!CL:1000494;1.26e-08;10!CL:0000622;3.76e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,6.29e-30,42;CL:0000066,7.49e-29,253;CL:0000223,4.32e-22,58;CL:0002251,2.01e-16,20;CL:0002368,4.86e-14,13;CL:0002159,2.38e-09,14;CL:0002202,2.78e-09,9;CL:0002632,2.78e-09,9;CL:1000507,1.38e-08,10;CL:1000494,1.38e-08,10;CL:0000622,3.64e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;1.33e-11;58!UBERON:0006595;1.40e-07;86 | |||
|ontology_enrichment_disease=DOID:305!2.12e-19!106;DOID:1749!5.29e-12!14;DOID:0050687!5.80e-11!143 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.40e-15;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.40e-15,14;DOID:305,1.91e-10,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.50e-33!169;UBERON:0000925!2.50e-33!169;UBERON:0006595!2.50e-33!169;UBERON:0001007!1.93e-25!155;UBERON:0001555!1.93e-25!155;UBERON:0007026!1.93e-25!155;UBERON:0004921!7.66e-23!129;UBERON:0004185!7.66e-23!129;UBERON:0000077!1.25e-21!130;UBERON:0001004!1.80e-18!72;UBERON:0005911!8.95e-17!82;UBERON:0000466!7.57e-16!126;UBERON:0001041!4.20e-15!98;UBERON:0000464!2.61e-14!104;UBERON:0000065!1.59e-13!53;UBERON:0005153!1.48e-12!37;UBERON:0000161!3.47e-12!35;UBERON:0005177!3.60e-11!107;UBERON:0005178!6.46e-11!34;UBERON:0002224!6.46e-11!34;UBERON:0001008!1.37e-10!45;UBERON:0005181!2.22e-10!35;UBERON:0006554!4.16e-10!44;UBERON:0008947!1.12e-09!38;UBERON:0003258!1.12e-09!38;UBERON:0003104!1.32e-09!238;UBERON:0009142!1.32e-09!238;UBERON:0000166!2.04e-09!21;UBERON:0000062!4.49e-09!511;UBERON:0000072!6.68e-09!46;UBERON:0005157!1.03e-08!51;UBERON:0002048!1.38e-08!22;UBERON:0000117!1.38e-08!22;UBERON:0000171!1.38e-08!22;UBERON:0000170!1.38e-08!22;UBERON:0005597!1.38e-08!22;UBERON:0000118!1.38e-08!22;UBERON:0009569!1.70e-08!113;UBERON:0000344!3.17e-08!12;UBERON:0000064!7.52e-08!219;UBERON:0003064!8.72e-08!37;UBERON:0000922!1.70e-07!612;UBERON:0000058!3.49e-07!26;UBERON:0004807!4.36e-07!28;UBERON:0000481!5.37e-07!347;UBERON:0000165!6.45e-07!28;UBERON:0000930!6.45e-07!28;UBERON:0003929!7.34e-07!54;UBERON:0005156!9.34e-07!59;UBERON:0000990!9.34e-07!59;UBERON:0002365!9.87e-07!31;UBERON:0002330!9.87e-07!31 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;8.88e-14;33!UBERON:0006554;1.81e-10;30!UBERON:0001008;1.81e-10;30!UBERON:0001555;2.19e-10;54!UBERON:0000344;1.27e-09;20!UBERON:0000161;2.25e-09;19!UBERON:0000166;2.25e-09;19!UBERON:0005409;3.18e-09;22!UBERON:0005178;7.48e-09;34!UBERON:0002224;7.48e-09;34!UBERON:0000165;8.57e-09;28!UBERON:0004211;1.26e-08;10!UBERON:0009773;1.26e-08;10!UBERON:0001231;1.26e-08;10!UBERON:0004810;1.26e-08;10!UBERON:0000974;2.62e-08;6!UBERON:0005181;2.99e-08;35!UBERON:0001041;8.11e-08;14!UBERON:0000160;1.23e-07;17!UBERON:0002294;1.26e-07;7!UBERON:0001173;1.26e-07;7!UBERON:0005911;1.39e-07;36!UBERON:0007196;1.47e-07;15!UBERON:0001558;1.47e-07;15!UBERON:0000365;1.61e-07;5!UBERON:0001007;5.93e-07;81!UBERON:0001004;6.17e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.23e-31,160;UBERON:0000925,1.23e-31,160;UBERON:0006595,1.23e-31,160;UBERON:0001007,3.31e-24,145;UBERON:0001555,3.31e-24,145;UBERON:0007026,3.31e-24,145;UBERON:0004921,5.94e-20,118;UBERON:0001008,2.94e-16,48;UBERON:0006554,1.36e-15,47;UBERON:0000161,4.77e-15,36;UBERON:0001004,6.50e-14,74;UBERON:0005911,4.82e-13,82;UBERON:0005177,4.60e-11,101;UBERON:0005153,5.00e-11,37;UBERON:0000166,1.26e-10,22;UBERON:0001041,3.48e-10,87;UBERON:0005178,5.21e-10,34;UBERON:0002224,5.21e-10,34;UBERON:0005157,1.21e-09,47;UBERON:0000344,1.22e-09,20;UBERON:0005181,1.44e-09,35;UBERON:0000065,1.92e-09,54;UBERON:0003102,2.55e-09,99;UBERON:0004810,1.38e-08,10;UBERON:0000165,2.34e-08,29;UBERON:0000930,2.34e-08,29;UBERON:0001046,3.65e-08,19;UBERON:0005409,9.98e-08,25;UBERON:0000160,1.15e-07,17;UBERON:0007196,1.44e-07,15;UBERON:0001558,1.44e-07,15;UBERON:0000365,1.57e-07,5;UBERON:0009569,3.59e-07,112;UBERON:0006555,4.82e-07,16;UBERON:0004819,4.82e-07,16;UBERON:0000489,7.70e-07,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,21.1331185391298,14.653824527421,5.24259293112413,4.22027165165526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.7913183671839,13.5542663450213,7.39508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.019899275575,53.1871120907112,41.1570731490717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,37.5040884842579,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,1.1409436430889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.0991287289829,14.7282905119051,26.9596319665664,0,0.397589304964456,0,0.414644220061482,0.252320850875628,0.36497735907583,0,0,0,0,0,0.118306800039844,0.168584690078102,0,0.220587945464788,0,0.237270619111097,0,0,0,0,0,0.8231480226628,0,0,0,0,0,25.2126299013383,0,44.558615875902,20.2323155863715,35.4867272613057,30.8319522377904,0,0,0,0,0,0,0,0,0,0,0,0,0,7.49870671894216,17.1341770762837,8.3647307373008,38.1519306714134,24.4132508351728,41.4053293498428,0,0,0,0.288239906833923,0.12624243342638,0.063497894292169,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6407407150817,1.66435439510497,2.41912234663744,0,0,0,0,0,0,0,0,0,0,0,0,8.09758312263869,24.4617893770008,50.1841389700635,0,0,0,16.6943856775742,13.3236533190638,3.13739907670742,7.30696123266303,2.95544560900052,0,0,0,0,0.541892875087706,1.00337954770971,20.6449781166481,15.7904441696458,7.61174166055406,0.438519753291869,0,0,0,0,5.87333766392017,0,0,53.9809605716402,56.5552414051773,0,0,0,0,0,0,0,0.0852266274161009,0,18.0160557743466,30.9426008457821,16.4620399118014,26.4021808032985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,25.3064156468097,42.8993456342904,11.9780083347455,6.40177845282098,28.8438599689724,25.2707213501438,28.8229599798839,17.4589784157289,0,0,0,0,0,0,0,0,0,0,16.6627346867102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.6930593036002,0,0,0,0,8.60846485877811,0,0,0,0,34.3792058022274,4.75143489332222,27.9516238910301,0,0,0,0,0,3.38721580026819,1.38141957765574,0.251932747854276,0,0,0,39.6319428559711,31.149684393556,0,4.14302303675121,0,0,0,0,0,0,0.262379999988587,3.62499787717397,13.427626897689,26.4423796304477,0.236387681767936,0,0,0,0,0,0,0,0,0,0,22.8654940616909,5.84821964628858,0,0.23056390438806,0,0,6.06102203490647,0.549585560411174,0,0,0,0.332423363800313,0.902382642468723,1.56850027454192,1.67821586975843,0.189753732724185,0.158936578980379,0.421996129056054,7.83517479163909,2.82706142867882,0,4.97630965539252,9.0226715793406,9.77648231893801,0,0,0,0,0,0,0,3.32629852184552,0,0,6.04953580243319,0,0,0,0,0,0,0,0,0.853828638089378,0.416024019039416,3.99187398170801,60.7552863969141,20.7200911661358,1.04836000945218,0,0.0967563312890851,0.0730893170861856,0.0821154570532092,41.9962441394856,0,7.00540296419651,0,0,0,18.5773813598063,18.3563698376012,11.3130087211857,0.19980960958213,5.76361668616424,0,0,7.77895909136008,0,24.5121796001467,0,0,0,0,0,0,0,0,0,0,0,0,1.19807400299395,0,0,0.0671834724867263,0,2.32991899054908,0.709048640765013,0.824158583811665,1.07845670166696,0.0984274815147488,0,0,0,0.160753148465019,0.687697182986169,0.415440338029185,2.249738915515,14.702237136601,0.0607495566580247,24.8221668823457,2.60058834087354,6.71418728127976,0.105600336519406,0,12.8583182204028,0,0,0,0,0,0,0,0.574647645245373,0,0,0.58620893471233,0,0,0,0.855434189421647,18.3251905802335,39.9384923003178,2.82967749179399,57.164989637913,0,0,0,52.3439831371549,0,0,0,0,0.314108192500469,0,0,0,0,0,0.124192805882767,0,1.74972571146949,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,66.1406946112503,0,0,0,0,0,20.8420466501972,28.6155539615168,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,14.6240100566528,13.6844879083379,45.123435236333,29.4590448683362,0,0,0,0.150420656698515,0,5.47059807863165,0,0,54.1153275554386,0.0675375846183947,0,0,0,0,4.93431990171464,3.96968942711435,0,9.70994450060924,0,0,0,0,0.79832133146375,0,0.171488009437418,0,0.131545547125698,4.01859059005492,7.78619813244484,15.5416323844018,0,24.1034060449859,1.82631744101899,3.45484145949794,0,0.0714765441766563,0,0,0,0,3.72989095493466,4.7801173586306,20.0465301926087,0.430227358820278,0,0,1.69354820076372,9.39338161030605,0,0,6.15204874887858,30.2302719534948,21.2137189469149,0,0,0,13.5999078056559,0.233939463462106,0.198950775161368,0,0.11294608203896,0,3.17021971490014,15.1261349891572,13.7692523117493,15.5204707799303,0,8.24867914855691,0,0,0,0,0,0.0644578879735772,0,30.7112774401731,26.1142205069612,6.8205161685793,29.2134555298607,3.21110498383179,0,0,0,0,4.7612415646386,0,0,0,0,0,0,0.203977659483963,0.5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| ||
|short_description=p1@C1orf116 | |||
}} | }} |
Latest revision as of 06:56, 20 September 2015
Short description: | p1@C1orf116 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_C1orf116_5end |
Coexpression cluster: | C1844_squamous_epidermoid_bronchioalveolar_Corneal_Alveolar_Esophageal_Urothelial |
Association with transcript: | 41bp_to_ENST00000359470_5end |
EntrezGene: | C1orf116 |
HGNC: | 28667 |
UniProt: | Q9BW04 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 6.29e-30 | 42 |
epithelial cell | 7.49e-29 | 253 |
endodermal cell | 4.32e-22 | 58 |
epithelial cell of alimentary canal | 2.01e-16 | 20 |
respiratory epithelial cell | 4.86e-14 | 13 |
general ecto-epithelial cell | 2.38e-09 | 14 |
epithelial cell of tracheobronchial tree | 2.78e-09 | 9 |
epithelial cell of lower respiratory tract | 2.78e-09 | 9 |
kidney tubule cell | 1.38e-08 | 10 |
nephron tubule epithelial cell | 1.38e-08 | 10 |
acinar cell | 3.64e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.23e-31 | 160 |
endoderm | 1.23e-31 | 160 |
presumptive endoderm | 1.23e-31 | 160 |
digestive system | 3.31e-24 | 145 |
digestive tract | 3.31e-24 | 145 |
primitive gut | 3.31e-24 | 145 |
subdivision of digestive tract | 5.94e-20 | 118 |
renal system | 2.94e-16 | 48 |
urinary system structure | 1.36e-15 | 47 |
orifice | 4.77e-15 | 36 |
respiratory system | 6.50e-14 | 74 |
endo-epithelium | 4.82e-13 | 82 |
trunk region element | 4.60e-11 | 101 |
epithelial bud | 5.00e-11 | 37 |
oral opening | 1.26e-10 | 22 |
foregut | 3.48e-10 | 87 |
thoracic cavity element | 5.21e-10 | 34 |
thoracic cavity | 5.21e-10 | 34 |
epithelial fold | 1.21e-09 | 47 |
mucosa | 1.22e-09 | 20 |
thoracic segment organ | 1.44e-09 | 35 |
respiratory tract | 1.92e-09 | 54 |
surface structure | 2.55e-09 | 99 |
nephron tubule epithelium | 1.38e-08 | 10 |
mouth | 2.34e-08 | 29 |
stomodeum | 2.34e-08 | 29 |
hindgut | 3.65e-08 | 19 |
gastrointestinal system | 9.98e-08 | 25 |
intestine | 1.15e-07 | 17 |
tracheobronchial tree | 1.44e-07 | 15 |
lower respiratory tract | 1.44e-07 | 15 |
urothelium | 1.57e-07 | 5 |
subdivision of trunk | 3.59e-07 | 112 |
excretory tube | 4.82e-07 | 16 |
kidney epithelium | 4.82e-07 | 16 |
cavitated compound organ | 7.70e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.40e-15 | 14 |
carcinoma | 1.91e-10 | 106 |