FFCP PHASE1:Hg19::chr1:45477877..45477888,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:45477877..45477888,+ to FFCP PHASE1:Hg19::chr1:45477877..45477888,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7389 | |EntrezGene=7389 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12591 | |HGNC=12591 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000461035,ENST00000491300_5end | |||
|cluster_id=chr1:45477877..45477888,+ | |||
|description=CAGE_peak_3_at_UROD_5end | |||
|id=chr1:45477877..45477888,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.05e-10!180;CL:0000183!2.39e-10!59;CL:0002371!7.63e-10!591;CL:0000680!1.21e-09!57;CL:0000056!1.21e-09!57;CL:0000355!1.21e-09!57;CL:0000222!1.54e-09!119;CL:0000187!6.66e-09!54;CL:0000144!1.69e-07!625;CL:0000192!1.76e-07!42;CL:0000514!1.76e-07!42;CL:0000393!7.87e-07!60;CL:0000211!7.87e-07!60 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.00e-10,121;CL:0000680,3.84e-10,58;CL:0000056,3.84e-10,58;CL:0000355,3.84e-10,58;CL:0000187,2.21e-09,55;CL:0000192,8.20e-08,43;CL:0000514,8.20e-08,43;CL:0000393,3.95e-07,61;CL:0000211,3.95e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.53e-11!83;UBERON:0002329!2.53e-11!83;UBERON:0003077!2.53e-11!83;UBERON:0003059!2.53e-11!83;UBERON:0007282!2.53e-11!83;UBERON:0009618!2.53e-11!83;UBERON:0007285!2.53e-11!83;UBERON:0004290!4.80e-11!70;UBERON:0005256!5.93e-11!143;UBERON:0000483!6.91e-11!309;UBERON:0000119!1.34e-10!312;UBERON:0003914!3.85e-10!118;UBERON:0001134!5.17e-10!61;UBERON:0002036!5.17e-10!61;UBERON:0003082!5.17e-10!61;UBERON:0002385!7.29e-10!63;UBERON:0001015!7.29e-10!63;UBERON:0000383!7.29e-10!63;UBERON:0000486!1.21e-09!82;UBERON:0000490!2.20e-09!138;UBERON:0004872!4.88e-09!84;UBERON:0002049!9.12e-09!79;UBERON:0007798!9.12e-09!79;UBERON:0001009!3.09e-08!113;UBERON:0000475!1.44e-07!365;UBERON:0004535!2.58e-07!110;UBERON:0000055!6.23e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,4.92e-13,78;UBERON:0002329,1.75e-11,71;UBERON:0003059,1.75e-11,71;UBERON:0007282,1.75e-11,71;UBERON:0004290,1.75e-11,71;UBERON:0009618,1.75e-11,71;UBERON:0003077,3.70e-11,72;UBERON:0007285,3.70e-11,72;UBERON:0000483,6.61e-11,306;UBERON:0007524,6.85e-11,73;UBERON:0000490,9.36e-11,148;UBERON:0000119,1.22e-10,309;UBERON:0001134,1.63e-10,62;UBERON:0002036,1.63e-10,62;UBERON:0003082,1.63e-10,62;UBERON:0002385,2.33e-10,64;UBERON:0001015,2.33e-10,64;UBERON:0000383,2.33e-10,64;UBERON:0003914,4.10e-10,117;UBERON:0000486,9.16e-10,83;UBERON:0004872,1.83e-09,83;UBERON:0002049,3.13e-09,78;UBERON:0007798,3.13e-09,78;UBERON:0005256,4.00e-09,122;UBERON:0001009,8.61e-09,112;UBERON:0004535,7.92e-08,109;UBERON:0003104,1.91e-07,160;UBERON:0009142,1.91e-07,160;UBERON:0000055,2.44e-07,68 | |||
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| ||
|short_description=p3@UROD | |||
}} | }} |
Latest revision as of 07:12, 18 September 2015
Short description: | p3@UROD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_UROD_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000461035, ENST00000491300_5end |
EntrezGene: | UROD |
HGNC: | 12591 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.00e-10 | 121 |
muscle precursor cell | 3.84e-10 | 58 |
myoblast | 3.84e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.84e-10 | 58 |
muscle cell | 2.21e-09 | 55 |
smooth muscle cell | 8.20e-08 | 43 |
smooth muscle myoblast | 8.20e-08 | 43 |
electrically responsive cell | 3.95e-07 | 61 |
electrically active cell | 3.95e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 4.92e-13 | 78 |
somite | 1.75e-11 | 71 |
presomitic mesoderm | 1.75e-11 | 71 |
presumptive segmental plate | 1.75e-11 | 71 |
dermomyotome | 1.75e-11 | 71 |
trunk paraxial mesoderm | 1.75e-11 | 71 |
paraxial mesoderm | 3.70e-11 | 72 |
presumptive paraxial mesoderm | 3.70e-11 | 72 |
epithelium | 6.61e-11 | 306 |
dense mesenchyme tissue | 6.85e-11 | 73 |
unilaminar epithelium | 9.36e-11 | 148 |
cell layer | 1.22e-10 | 309 |
skeletal muscle tissue | 1.63e-10 | 62 |
striated muscle tissue | 1.63e-10 | 62 |
myotome | 1.63e-10 | 62 |
muscle tissue | 2.33e-10 | 64 |
musculature | 2.33e-10 | 64 |
musculature of body | 2.33e-10 | 64 |
epithelial tube | 4.10e-10 | 117 |
multilaminar epithelium | 9.16e-10 | 83 |
splanchnic layer of lateral plate mesoderm | 1.83e-09 | 83 |
vasculature | 3.13e-09 | 78 |
vascular system | 3.13e-09 | 78 |
trunk mesenchyme | 4.00e-09 | 122 |
circulatory system | 8.61e-09 | 112 |
cardiovascular system | 7.92e-08 | 109 |
mesenchyme | 1.91e-07 | 160 |
entire embryonic mesenchyme | 1.91e-07 | 160 |
vessel | 2.44e-07 | 68 |