FFCP PHASE1:Hg19::chr20:52687059..52687143,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8537 | |EntrezGene=8537 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=974 | |HGNC=974 | ||
|TSSclassifier=strong | |||
|UniProt=G3XAF7,O75363 | |UniProt=G3XAF7,O75363 | ||
|association_with_transcript=0bp_to_ENST00000371435,ENST00000395961_5end | |||
|cluster_id=chr20:52687059..52687143,- | |||
|coexpression_cluster_id=C3948 | |||
|description=CAGE_peak_3_at_BCAS1_5end | |||
|id=chr20:52687059..52687143,- | |||
|ontology_enrichment_celltype=CL:0000223!2.89e-11!59;CL:0002076!9.09e-10!43 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006595;1.98e-13;86!UBERON:0001041;5.58e-12;30!UBERON:0009497;8.96e-12;13!UBERON:0004161;4.06e-08;11 | |||
|ontology_enrichment_disease=DOID:305!1.70e-13!106;DOID:299!1.87e-11!25;DOID:7!9.26e-10!39;DOID:5093!5.15e-08!4;DOID:1612!5.15e-08!4;DOID:0050687!2.91e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:5093;2.37e-12;4!DOID:1612;2.37e-12;4!DOID:299;3.38e-11;25!DOID:7;1.72e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.36e-12,106;DOID:5093,2.02e-12,4;DOID:1612,2.02e-12,4;DOID:299,3.59e-11,25;DOID:7,7.07e-09,39;DOID:0050687,1.29e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.84e-23!169;UBERON:0000925!2.84e-23!169;UBERON:0006595!2.84e-23!169;UBERON:0004921!3.84e-21!129;UBERON:0004185!3.84e-21!129;UBERON:0001007!3.86e-21!155;UBERON:0001555!3.86e-21!155;UBERON:0007026!3.86e-21!155;UBERON:0000077!3.73e-15!130;UBERON:0005911!2.53e-11!82;UBERON:0001041!2.09e-10!98;UBERON:0000161!4.70e-10!35;UBERON:0007023!2.21e-09!115;UBERON:0001004!3.62e-09!72;UBERON:0005409!6.77e-09!35;UBERON:0003929!6.97e-09!54;UBERON:0000466!1.03e-08!126;UBERON:0000160!4.82e-08!27;UBERON:0002294!6.05e-08!7;UBERON:0001173!6.05e-08!7;UBERON:0004912!6.05e-08!7;UBERON:0001046!7.30e-07!19;UBERON:0000166!8.76e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;4.17e-21;33!UBERON:0005409;2.29e-19;22!UBERON:0000160;4.61e-18;17!UBERON:0002108;6.24e-10;4!UBERON:0002294;1.46e-09;7!UBERON:0001173;1.46e-09;7!UBERON:0001007;1.46e-09;81!UBERON:0000059;2.21e-09;11!UBERON:0001555;1.06e-08;54!UBERON:0002423;1.40e-08;25!UBERON:0001155;3.58e-08;9!UBERON:0003127;4.72e-07;2!UBERON:0006562;5.62e-07;2!UBERON:0000341;7.51e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,1.15e-24,118;UBERON:0001007,4.60e-22,145;UBERON:0001555,4.60e-22,145;UBERON:0007026,4.60e-22,145;UBERON:0004119,3.55e-20,160;UBERON:0000925,3.55e-20,160;UBERON:0006595,3.55e-20,160;UBERON:0000160,4.90e-18,17;UBERON:0005409,1.01e-16,25;UBERON:0001041,6.02e-12,87;UBERON:0002108,6.76e-10,4;UBERON:0011216,9.30e-10,223;UBERON:0000059,2.20e-09,11;UBERON:0009497,1.45e-08,25;UBERON:0000015,1.45e-08,25;UBERON:0002423,1.45e-08,25;UBERON:0006235,1.45e-08,25;UBERON:0004161,1.45e-08,25;UBERON:0009856,3.12e-08,26;UBERON:0001155,3.55e-08,9;UBERON:0005911,4.84e-08,82;UBERON:0009854,1.09e-07,23;UBERON:0007023,2.42e-07,114;UBERON:0002294,2.65e-07,9;UBERON:0001173,2.65e-07,9;UBERON:0004912,2.65e-07,9;UBERON:0003127,4.93e-07,2;UBERON:0000341,7.62e-07,2;UBERON:0007499,7.74e-07,25 | |||
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| ||
|short_description=p3@BCAS1 | |||
}} | }} |
Latest revision as of 02:21, 17 September 2015
Short description: | p3@BCAS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BCAS1_5end |
Coexpression cluster: | C3948_stomach_colon_temporal_MCF7_rectum_duodenum_small |
Association with transcript: | 0bp_to_ENST00000371435, ENST00000395961_5end |
EntrezGene: | BCAS1 |
HGNC: | 974 |
UniProt: | G3XAF7O75363 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 1.15e-24 | 118 |
digestive system | 4.60e-22 | 145 |
digestive tract | 4.60e-22 | 145 |
primitive gut | 4.60e-22 | 145 |
endoderm-derived structure | 3.55e-20 | 160 |
endoderm | 3.55e-20 | 160 |
presumptive endoderm | 3.55e-20 | 160 |
intestine | 4.90e-18 | 17 |
gastrointestinal system | 1.01e-16 | 25 |
foregut | 6.02e-12 | 87 |
small intestine | 6.76e-10 | 4 |
organ system subdivision | 9.30e-10 | 223 |
large intestine | 2.20e-09 | 11 |
epithelium of foregut-midgut junction | 1.45e-08 | 25 |
anatomical boundary | 1.45e-08 | 25 |
hepatobiliary system | 1.45e-08 | 25 |
foregut-midgut junction | 1.45e-08 | 25 |
septum transversum | 1.45e-08 | 25 |
sac | 3.12e-08 | 26 |
colon | 3.55e-08 | 9 |
endo-epithelium | 4.84e-08 | 82 |
digestive tract diverticulum | 1.09e-07 | 23 |
adult organism | 2.42e-07 | 114 |
biliary system | 2.65e-07 | 9 |
biliary tree | 2.65e-07 | 9 |
biliary bud | 2.65e-07 | 9 |
open tracheal system trachea | 4.93e-07 | 2 |
throat | 7.62e-07 | 2 |
epithelial sac | 7.74e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.36e-12 | 106 |
thoracic cancer | 2.02e-12 | 4 |
breast cancer | 2.02e-12 | 4 |
adenocarcinoma | 3.59e-11 | 25 |
disease of anatomical entity | 7.07e-09 | 39 |
cell type cancer | 1.29e-07 | 143 |