FFCP PHASE1:Hg19::chr22:33197683..33197698,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr22:33197683..33197698,+ to FFCP PHASE1:Hg19::chr22:33197683..33197698,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7078 | |EntrezGene=7078 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11822 | |HGNC=11822 | ||
|TSSclassifier=strong | |||
|UniProt=P35625,F5H8D8 | |UniProt=P35625,F5H8D8 | ||
|association_with_transcript=0bp_to_ENST00000266085,ENST00000538671_5end | |||
|cluster_id=chr22:33197683..33197698,+ | |||
|coexpression_cluster_id=C1492 | |||
|description=CAGE_peak_1_at_TIMP3_5end | |||
|id=chr22:33197683..33197698,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.32e-18!180;CL:0000057!3.15e-12!75;CL:0000183!7.33e-08!59;CL:0000192!1.03e-07!42;CL:0000514!1.03e-07!42;CL:0000187!1.16e-07!54;CL:0002334!1.26e-07!12;CL:0000136!1.85e-07!15;CL:0000359!2.12e-07!32;CL:0000680!4.56e-07!57;CL:0000056!4.56e-07!57;CL:0000355!4.56e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002334;1.11e-07;12!CL:0000359;3.35e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,9.07e-13,76;CL:0000192,2.97e-08,43;CL:0000514,2.97e-08,43;CL:0000187,3.66e-08,55;CL:0002334,1.11e-07,12;CL:0000680,1.54e-07,58;CL:0000056,1.54e-07,58;CL:0000355,1.54e-07,58;CL:0000136,1.64e-07,15;CL:0000359,1.89e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.34e-16!365;UBERON:0000468!1.32e-12!659;UBERON:0004923!3.59e-11!57;UBERON:0000467!5.50e-11!625;UBERON:0000480!1.04e-10!626;UBERON:0000481!2.89e-09!347;UBERON:0007023!4.87e-09!115;UBERON:0003102!7.05e-09!95;UBERON:0000062!2.04e-08!511;UBERON:0004290!3.84e-08!70;UBERON:0000477!3.86e-08!286;UBERON:0000119!3.94e-08!312;UBERON:0000914!4.94e-08!83;UBERON:0002329!4.94e-08!83;UBERON:0003077!4.94e-08!83;UBERON:0003059!4.94e-08!83;UBERON:0007282!4.94e-08!83;UBERON:0009618!4.94e-08!83;UBERON:0007285!4.94e-08!83;UBERON:0002385!5.64e-08!63;UBERON:0001015!5.64e-08!63;UBERON:0000383!5.64e-08!63;UBERON:0004872!7.45e-08!84;UBERON:0000064!8.16e-08!219;UBERON:0001134!1.11e-07!61;UBERON:0002036!1.11e-07!61;UBERON:0003082!1.11e-07!61;UBERON:0000486!1.21e-07!82;UBERON:0004111!1.42e-07!241;UBERON:0000483!1.52e-07!309;UBERON:0005631!1.57e-07!14;UBERON:0000158!1.57e-07!14;UBERON:0002199!2.61e-07!45;UBERON:0002416!2.61e-07!45;UBERON:0005256!4.22e-07!143;UBERON:0002100!7.30e-07!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,1.35e-11,66;UBERON:0007023,2.91e-09,114;UBERON:0007524,5.37e-09,73;UBERON:0003102,7.74e-09,99;UBERON:0002329,1.27e-08,71;UBERON:0003059,1.27e-08,71;UBERON:0007282,1.27e-08,71;UBERON:0004290,1.27e-08,71;UBERON:0009618,1.27e-08,71;UBERON:0007503,1.28e-08,78;UBERON:0003077,1.31e-08,72;UBERON:0007285,1.31e-08,72;UBERON:0002385,1.83e-08,64;UBERON:0001015,1.83e-08,64;UBERON:0000383,1.83e-08,64;UBERON:0005256,2.19e-08,122;UBERON:0001134,3.65e-08,62;UBERON:0002036,3.65e-08,62;UBERON:0003082,3.65e-08,62;UBERON:0000119,4.22e-08,309;UBERON:0000486,5.30e-08,83;UBERON:0004872,1.15e-07,83;UBERON:0005631,1.39e-07,14;UBERON:0000158,1.39e-07,14;UBERON:0000483,1.63e-07,306;UBERON:0004111,2.50e-07,240;UBERON:0002199,2.69e-07,46;UBERON:0002416,2.69e-07,46;UBERON:0010314,4.56e-07,132;UBERON:0003104,9.72e-07,160;UBERON:0009142,9.72e-07,160 | |||
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| ||
|short_description=p1@TIMP3 | |||
}} | }} |
Latest revision as of 22:18, 19 September 2015
Short description: | p1@TIMP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TIMP3_5end |
Coexpression cluster: | C1492_chorionic_amniotic_Smooth_basal_spindle_placenta_mesenchymal |
Association with transcript: | 0bp_to_ENST00000266085, ENST00000538671_5end |
EntrezGene: | TIMP3 |
HGNC: | 11822 |
UniProt: | P35625F5H8D8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 9.07e-13 | 76 |
smooth muscle cell | 2.97e-08 | 43 |
smooth muscle myoblast | 2.97e-08 | 43 |
muscle cell | 3.66e-08 | 55 |
preadipocyte | 1.11e-07 | 12 |
muscle precursor cell | 1.54e-07 | 58 |
myoblast | 1.54e-07 | 58 |
multi-potent skeletal muscle stem cell | 1.54e-07 | 58 |
fat cell | 1.64e-07 | 15 |
vascular associated smooth muscle cell | 1.89e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 1.35e-11 | 66 |
adult organism | 2.91e-09 | 114 |
dense mesenchyme tissue | 5.37e-09 | 73 |
surface structure | 7.74e-09 | 99 |
somite | 1.27e-08 | 71 |
presomitic mesoderm | 1.27e-08 | 71 |
presumptive segmental plate | 1.27e-08 | 71 |
dermomyotome | 1.27e-08 | 71 |
trunk paraxial mesoderm | 1.27e-08 | 71 |
epithelial vesicle | 1.28e-08 | 78 |
paraxial mesoderm | 1.31e-08 | 72 |
presumptive paraxial mesoderm | 1.31e-08 | 72 |
muscle tissue | 1.83e-08 | 64 |
musculature | 1.83e-08 | 64 |
musculature of body | 1.83e-08 | 64 |
trunk mesenchyme | 2.19e-08 | 122 |
skeletal muscle tissue | 3.65e-08 | 62 |
striated muscle tissue | 3.65e-08 | 62 |
myotome | 3.65e-08 | 62 |
cell layer | 4.22e-08 | 309 |
multilaminar epithelium | 5.30e-08 | 83 |
splanchnic layer of lateral plate mesoderm | 1.15e-07 | 83 |
extraembryonic membrane | 1.39e-07 | 14 |
membranous layer | 1.39e-07 | 14 |
epithelium | 1.63e-07 | 306 |
anatomical conduit | 2.50e-07 | 240 |
integument | 2.69e-07 | 46 |
integumental system | 2.69e-07 | 46 |
structure with developmental contribution from neural crest | 4.56e-07 | 132 |
mesenchyme | 9.72e-07 | 160 |
entire embryonic mesenchyme | 9.72e-07 | 160 |