FFCP PHASE1:Hg19::chr3:171757346..171757419,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:171757346..171757419,+ to FFCP PHASE1:Hg19::chr3:171757346..171757419,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64778 | |EntrezGene=64778 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24670 | |HGNC=24670 | ||
|TSSclassifier=strong | |||
|UniProt=A8MYM6,Q53EP0 | |UniProt=A8MYM6,Q53EP0 | ||
|association_with_transcript=0bp_to_ENST00000392699,ENST00000415807,ENST00000421757,NM_022763,uc003fhx.2,uc003fhy.2_5end | |||
|cluster_id=chr3:171757346..171757419,+ | |||
|description=CAGE_peak_1_at_FNDC3B_5end | |||
|id=chr3:171757346..171757419,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.58e-16!42;CL:0000860!1.92e-14!45;CL:0000766!1.97e-14!76;CL:0002009!1.47e-13!65;CL:0000048!2.70e-13!430;CL:0002194!2.93e-13!63;CL:0000576!2.93e-13!63;CL:0000040!2.93e-13!63;CL:0000559!2.93e-13!63;CL:0000557!1.53e-12!71;CL:0000723!5.16e-12!436;CL:0000034!9.75e-11!444;CL:0000839!2.59e-10!70;CL:0000134!3.77e-09!358;CL:0000763!3.97e-09!112;CL:0000049!3.97e-09!112;CL:0002371!1.25e-08!591;CL:0002320!2.41e-08!365;CL:0000144!5.32e-08!625;CL:0000548!2.23e-07!679;CL:0000004!2.23e-07!679;CL:0000255!2.23e-07!679;CL:0000012!2.31e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.96e-18;33!CL:0002057;3.96e-18;33!CL:0000473;1.07e-14;39!CL:0000234;1.07e-14;39!CL:0000576;7.36e-10;48!CL:0000766;1.19e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.58e-16,42;CL:0002057,1.58e-16,42;CL:0000473,4.33e-16,48;CL:0000234,4.33e-16,48;CL:0000766,1.80e-15,72;CL:0002009,1.09e-14,61;CL:0002194,2.12e-14,59;CL:0000576,2.12e-14,59;CL:0000040,2.12e-14,59;CL:0000559,2.12e-14,59;CL:0000048,8.80e-14,427;CL:0000557,1.62e-13,67;CL:0000723,1.80e-12,433;CL:0000034,3.65e-11,441;CL:0000839,3.88e-11,66;CL:0000763,1.26e-09,108;CL:0000049,1.26e-09,108;CL:0000134,1.28e-09,354;CL:0002320,8.80e-09,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.44e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!4.65e-22!448;UBERON:0004120!4.65e-22!448;UBERON:0006603!4.65e-22!448;UBERON:0003081!2.00e-16!216;UBERON:0002204!2.24e-14!167;UBERON:0002405!1.80e-13!115;UBERON:0001474!6.19e-11!86;UBERON:0001009!7.30e-11!113;UBERON:0002371!7.98e-11!80;UBERON:0004535!8.68e-11!110;UBERON:0004765!2.11e-10!101;UBERON:0001434!2.11e-10!101;UBERON:0002193!4.10e-10!112;UBERON:0004872!1.06e-09!84;UBERON:0002390!2.23e-09!102;UBERON:0003061!2.23e-09!102;UBERON:0002384!6.41e-09!375;UBERON:0003914!8.32e-09!118;UBERON:0002049!1.70e-08!79;UBERON:0007798!1.70e-08!79;UBERON:0000055!2.10e-08!69;UBERON:0001981!6.15e-07!60;UBERON:0007500!6.15e-07!60;UBERON:0004537!6.15e-07!60;UBERON:0006965!6.15e-07!60 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,1.70e-20,315;UBERON:0004120,1.70e-20,315;UBERON:0006603,1.70e-20,315;UBERON:0003081,2.85e-19,203;UBERON:0002204,2.62e-14,167;UBERON:0001474,1.16e-11,82;UBERON:0002371,1.36e-11,76;UBERON:0002405,9.80e-11,93;UBERON:0002193,1.17e-10,108;UBERON:0004765,1.24e-10,90;UBERON:0001009,1.40e-10,112;UBERON:0004535,1.67e-10,109;UBERON:0001434,1.80e-10,100;UBERON:0002390,6.27e-10,98;UBERON:0003061,6.27e-10,98;UBERON:0004872,2.06e-09,83;UBERON:0002384,2.27e-09,371;UBERON:0003914,6.48e-09,117;UBERON:0002049,3.23e-08,78;UBERON:0007798,3.23e-08,78;UBERON:0000055,4.09e-08,68;UBERON:0005256,7.85e-07,122 | |||
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|phase1_expression=48.3264488859681,57.5930409266745,64.6980714800508,50.0366491765652,54.9762146145564,52.3403114460221,32.9289841618804,19.5833160762318,25.857377191784,34.6484850467128,25.1208420470074,64.2217634062707,41.9389495383241,24.3819715331292,29.8257638155124,67.9048397916293,64.4883144985655,63.5369778637015,60.0157342512324,25.6091800799719,30.8041043778822,21.9418305034661,28.9098347002367,31.6179921918363,44.3165517769654,17.4222565105329,15.9275143532895,15.5847347001085,48.3838060524152,44.1403807811795,50.7796884476729,19.3078457140575,27.710944527599,15.5296684270051,6.19737604642413,7.10846162437108,32.589648766168,118.00102201729,120.126124034615,113.930707125822,44.5591793737449,51.8229865630367,47.3939044446903,76.1886771204919,104.6716364018,91.9393591901823,119.236095932616,157.888469000381,164.4540829453,120.543112382981,133.459728101661,138.342104484822,140.65623774054,182.672165454223,196.368405561796,104.850983125231,140.819573429848,136.631878542611,177.222573682753,206.678293437004,226.325342532861,94.3374718534008,95.5430920007617,110.8184351385,196.76186379018,317.735725827038,329.472969718659,99.2432227764136,118.898105399806,115.978843072532,156.798471182043,252.638458287469,249.372361303417,27.4631872205524,38.4813782936729,25.7880133975302,49.3122690733113,50.1590822090631,66.5403928925912,22.5160067555586,19.4938343655108,21.5543701442268,8.79981222306614,7.09980194640771,3.55803701545422,9.81479511902967,4.80475184443215,6.32227683949932,4.62731410949403,4.77026877267682,14.2303242277362,23.4894875748376,16.0554755812596,19.8256992868539,71.1845874986551,25.5482562231825,29.7031752871888,34.1919363591773,25.9057888739382,42.7997428200136,41.392127862466,29.3537639555535,31.1722765452658,18.2713149291685,12.3734481139432,14.3997031479354,14.6234086433108,22.6721635914445,23.1505638656583,21.0480517892705,14.9229009604358,20.2862160014537,23.5775635427676,31.5698177145861,22.9978152370949,27.8740983036013,19.1610246800961,14.0887252647878,19.4825162855017,15.2911398875566,13.0216690771284,12.3558765778289,20.6287913136549,20.4778577847069,12.4930726552346,21.5467299360055,18.064815932263,37.700460983025,42.5229911295777,35.1923301435202,82.894334546747,39.5713507225145,40.4045695425556,45.1798940480708,44.6190740465942,44.6127278399337,66.0087336052412,98.7868786714351,35.7341608880176,48.1152792493764,49.6266539166162,34.2510282426519,11.2931539370688,14.0898088258083,46.7348246862744,53.457829350875,51.7206466418385,11.9245312152671,21.1638116988647,7.05769252526173,41.9388679543748,26.6672724482899,46.16968671381,42.9634035862247,42.3694430572005,62.1766774784552,50.1587919688345,48.3239339646645,60.124498394054,121.83830304634,50.3536646386434,38.7738773916441,37.3414948048699,62.5027236587977,83.4446206318212,45.9893600663011,44.2322864073555,45.1572036738122,55.193989487718,39.8691577018614,34.9915330907078,210.848667897701,255.934974337895,13.082821564276,59.6366342034382,49.5125300608507,112.547803691236,105.269039814815,47.1708948323815,43.7328528111,60.8469275659318,77.7002777514054,80.6036581685395,64.3917012493109,67.346304082745,79.462649513589,58.7699442969599,20.1516431377065,20.9147251476315,24.5302883264113,20.1755718744931,26.6576311921346,34.8026830391483,32.3036855415172,35.9311341408612,32.4282597703067,35.6473945056391,52.2721257204104,69.9765409858316,56.4300044401576,33.7750526653632,29.6271560559157,42.1649411968519,52.0880537110264,50.0434487804155,44.4407303908579,76.771648101271,45.8266019966485,92.3856623797639,54.2435767599161,60.4005918304751,59.1179459286273,55.648365788757,119.287570041126,45.9708635139027,73.2489281927095,57.0980850244624,98.4491719552046,71.7068710423512,55.4445974888525,69.936889725773,44.532427416617,31.3687095774402,24.5441283517387,43.3666331739427,44.7415168806846,16.8323714458842,14.4457447470419,13.5946913157337,18.1406846276898,15.3915719034133,17.5189132356398,71.9667848717153,69.4700213248316,24.8642858434465,40.8643776668142,37.5377330468185,22.71490560765,22.4217637803875,20.9679595998629,25.5882016739154,19.827029412409,23.7270619111097,17.6629013689815,20.6032538381613,24.623818044569,35.4314618219831,39.2676966649648,32.1027728838492,27.931655163253,89.9960747234999,143.492773634933,99.8434942291573,2.20731549707325,24.5976877086227,37.7449182656756,41.924609026095,14.6122279234905,23.1216636546751,23.7026419605836,15.6387986548956,13.5191522086345,28.8662684050547,15.4187438616852,82.4209033535468,54.714883701447,45.8355657450845,66.5889532821094,11.0628615714299,8.58486162094873,60.0769494853249,60.1390961407841,73.4237941706318,26.2454735162976,83.1511534584355,49.3377338403505,24.3599181751747,23.5413490196309,15.3353071666084,49.2663237895943,13.64750727205,30.891889215575,27.2386711958057,33.5804872914171,13.9695367442772,20.627374980147,11.7217447210047,23.9501424431787,24.3701157706877,21.0240140490742,25.724378936752,36.5547334965876,48.8275277093274,29.408652614201,86.6120495577111,21.45938675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64 | ||
|short_description=p1@FNDC3B | |||
}} | }} |
Latest revision as of 17:48, 16 September 2015
Short description: | p1@FNDC3B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_FNDC3B_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000392699, ENST00000415807, ENST00000421757, NM_022763, uc003fhx.2, uc003fhy.2_5end |
EntrezGene: | FNDC3B |
HGNC: | 24670 |
UniProt: | A8MYM6Q53EP0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.58e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.58e-16 | 42 |
defensive cell | 4.33e-16 | 48 |
phagocyte | 4.33e-16 | 48 |
myeloid leukocyte | 1.80e-15 | 72 |
macrophage dendritic cell progenitor | 1.09e-14 | 61 |
monopoietic cell | 2.12e-14 | 59 |
monocyte | 2.12e-14 | 59 |
monoblast | 2.12e-14 | 59 |
promonocyte | 2.12e-14 | 59 |
multi fate stem cell | 8.80e-14 | 427 |
granulocyte monocyte progenitor cell | 1.62e-13 | 67 |
somatic stem cell | 1.80e-12 | 433 |
stem cell | 3.65e-11 | 441 |
myeloid lineage restricted progenitor cell | 3.88e-11 | 66 |
myeloid cell | 1.26e-09 | 108 |
common myeloid progenitor | 1.26e-09 | 108 |
mesenchymal cell | 1.28e-09 | 354 |
connective tissue cell | 8.80e-09 | 361 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 1.70e-20 | 315 |
mesoderm-derived structure | 1.70e-20 | 315 |
presumptive mesoderm | 1.70e-20 | 315 |
lateral plate mesoderm | 2.85e-19 | 203 |
musculoskeletal system | 2.62e-14 | 167 |
bone element | 1.16e-11 | 82 |
bone marrow | 1.36e-11 | 76 |
immune system | 9.80e-11 | 93 |
hemolymphoid system | 1.17e-10 | 108 |
skeletal element | 1.24e-10 | 90 |
circulatory system | 1.40e-10 | 112 |
cardiovascular system | 1.67e-10 | 109 |
skeletal system | 1.80e-10 | 100 |
hematopoietic system | 6.27e-10 | 98 |
blood island | 6.27e-10 | 98 |
splanchnic layer of lateral plate mesoderm | 2.06e-09 | 83 |
connective tissue | 2.27e-09 | 371 |
epithelial tube | 6.48e-09 | 117 |
vasculature | 3.23e-08 | 78 |
vascular system | 3.23e-08 | 78 |
vessel | 4.09e-08 | 68 |
trunk mesenchyme | 7.85e-07 | 122 |