FFCP PHASE1:Hg19::chr5:149535392..149535417,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:149535392..149535417,- to FFCP PHASE1:Hg19::chr5:149535392..149535417,-: NSchange) |
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(12 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5159 | |EntrezGene=5159 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8804 | |HGNC=8804 | ||
|TSSclassifier=strong | |||
|UniProt=E5RH16,P09619,Q59F04 | |UniProt=E5RH16,P09619,Q59F04 | ||
|association_with_transcript=4bp_to_ENST00000520579,NM_002609,uc003lro.2,uc003lrp.2,uc010jhd.2_5end | |||
|cluster_id=chr5:149535392..149535417,- | |||
|coexpression_cluster_id=C1528 | |||
|description=CAGE_peak_1_at_PDGFRB_5end | |||
|id=chr5:149535392..149535417,- | |||
|ontology_enrichment_celltype=CL:0000055!1.17e-24!180;CL:0000057!2.33e-21!75;CL:0002620!9.46e-10!23;CL:0000136!1.67e-08!15;CL:0000183!1.52e-07!59;CL:0000187!9.86e-07!54 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.55e-10;23!CL:0000057;3.06e-09;73!CL:0000136;1.12e-07;13!CL:0000134;4.25e-07;55!CL:0000723;4.75e-07;61!CL:0002320;6.03e-07;188!CL:0000048;9.15e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.98e-22,76;CL:0002620,3.59e-10,23;CL:0000136,7.34e-09,15;CL:0000187,3.74e-07,55;CL:0000680,5.40e-07,58;CL:0000056,5.40e-07,58;CL:0000355,5.40e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.94e-20!365;UBERON:0007023!1.39e-14!115;UBERON:0000914!2.51e-12!83;UBERON:0002329!2.51e-12!83;UBERON:0003077!2.51e-12!83;UBERON:0003059!2.51e-12!83;UBERON:0007282!2.51e-12!83;UBERON:0009618!2.51e-12!83;UBERON:0007285!2.51e-12!83;UBERON:0000481!1.21e-11!347;UBERON:0000033!2.14e-10!123;UBERON:0000153!3.26e-10!129;UBERON:0007811!3.26e-10!129;UBERON:0004290!4.09e-10!70;UBERON:0001013!2.18e-09!14;UBERON:0004121!2.76e-09!169;UBERON:0003075!4.27e-09!86;UBERON:0007284!4.27e-09!86;UBERON:0000924!5.24e-09!173;UBERON:0006601!5.24e-09!173;UBERON:0005256!8.31e-09!143;UBERON:0005743!8.35e-09!86;UBERON:0002346!1.29e-08!90;UBERON:0002199!1.34e-08!45;UBERON:0002416!1.34e-08!45;UBERON:0003102!1.46e-08!95;UBERON:0000073!1.65e-08!94;UBERON:0001016!1.65e-08!94;UBERON:0000468!1.75e-08!659;UBERON:0000955!3.92e-08!69;UBERON:0006238!3.92e-08!69;UBERON:0002385!4.49e-08!63;UBERON:0001015!4.49e-08!63;UBERON:0000383!4.49e-08!63;UBERON:0001017!4.63e-08!82;UBERON:0002616!5.32e-08!59;UBERON:0001134!7.58e-08!61;UBERON:0002036!7.58e-08!61;UBERON:0003082!7.58e-08!61;UBERON:0000486!4.19e-07!82;UBERON:0003056!7.62e-07!61;UBERON:0000479!8.29e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;8.54e-10;14!UBERON:0002384;4.11e-08;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.39e-15,132;UBERON:0007023,4.73e-15,114;UBERON:0007524,2.37e-11,73;UBERON:0003077,7.04e-11,72;UBERON:0007285,7.04e-11,72;UBERON:0002329,1.02e-10,71;UBERON:0003059,1.02e-10,71;UBERON:0007282,1.02e-10,71;UBERON:0004290,1.02e-10,71;UBERON:0009618,1.02e-10,71;UBERON:0000479,1.44e-10,773;UBERON:0007503,3.03e-10,78;UBERON:0003075,6.70e-10,82;UBERON:0007284,6.70e-10,82;UBERON:0003104,7.08e-10,160;UBERON:0009142,7.08e-10,160;UBERON:0001013,8.62e-10,14;UBERON:0004121,1.28e-09,171;UBERON:0000924,1.28e-09,171;UBERON:0006601,1.28e-09,171;UBERON:0002199,1.32e-09,46;UBERON:0002416,1.32e-09,46;UBERON:0002346,2.10e-09,86;UBERON:0003102,2.89e-09,99;UBERON:0002385,1.44e-08,64;UBERON:0001015,1.44e-08,64;UBERON:0000383,1.44e-08,64;UBERON:0001134,2.50e-08,62;UBERON:0002036,2.50e-08,62;UBERON:0003082,2.50e-08,62;UBERON:0000955,7.41e-08,68;UBERON:0006238,7.41e-08,68;UBERON:0005256,9.09e-08,122;UBERON:0001017,1.60e-07,81;UBERON:0010371,1.88e-07,104;UBERON:0002097,2.19e-07,41;UBERON:0000486,2.23e-07,83;UBERON:0003056,4.42e-07,61;UBERON:0001016,5.12e-07,89 | |||
|phase1_expression=189.853906337732,130.6013195735,215.660238266836,152.111413496758,261.919201334391,86.3615138859365,86.1219585772256,358.185168233013,188.576023560283,0.245733936501509,1.39560233594486,0,0.263766978228454,53.21953177282,68.5992567756786,15.4634783683908,6.02694528023977,7.30310090387373,7.3189919818576,26.9635117188166,49.3681672811092,9.40364164434263,7.72837165253853,5.61185142798825,40.6758152287161,0.0764134057479513,0.0821005894499457,0.236132343941038,1.18009283054671,1.15148819429164,1.23852898652861,0,0,0,0,0,0,1.10799081706375,0,1.51907609501096,0,0,0,0.290796477559129,0,0,0,0.822335776043652,0,0,0,0,0,0,0,0.376484679085209,0,1.12361742222542,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,7.87019353423379,0,0,0.211255286311942,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0.334372990781356,0,0,0,0.557052284425868,0,0,0,1.79327847615945,2.86130564631732,0,0,0,0,0,0,0.453237370790265,0,0,0,0.318565414324097,0,0,0.602300476311091,1.15187950038977,0,0,0,0.201606743224732,0,0.868946423296794,138.969913798958,23.4745300896273,27.7461759200461,18.4333967716129,156.417428118398,40.9915648659131,167.805334827782,51.0966613817768,28.2659103320563,29.9334686574461,32.4988707064566,50.8198812931125,0,0,0,0,0,0,0,0,0,4.30117297553062,0,0,0,0,0,0,1.06729878806013,0.66944122552934,0,0,0.488124115096339,0,0,0.0892997282840798,0,0.112611480483322,0,0,0.183201743930407,0,0,0,135.673342812822,13.2962037247809,8.73900593367244,151.162899134625,25.5361235182817,12.3349072031308,6.4049397437823,8.88003174301776,47.6152884161642,25.1908956770317,12.4231046366229,345.246292458089,240.84153643264,173.632180988843,53.6915332148151,26.2417037910447,59.1816774985132,17.3803057992772,25.5759252101648,16.5731951908653,43.893146819802,18.9164848660123,105.598948361632,163.944394304923,276.938960791984,136.524204290704,150.90980978141,34.3405672466295,29.6530892096555,37.9577838213331,107.549517115805,106.35126514226,229.56375400928,7.37309190540137,132.748330409758,206.082880209918,186.712004921574,182.455386419317,113.769992279237,215.645132018192,182.394519204958,70.0421778801255,41.8004752141542,133.789900349381,195.421934817602,187.509425909822,230.046215950766,46.0437088900316,100.88855242474,0,0,0,0.365921118388786,0.265059536642971,3.25343040034651,3.21349270547648,0.756962552626885,0,244.061270434513,178.820980817622,125.702778430757,114.234510295867,110.447560695447,0,0,0,0,0,0,0.134831308160164,0,0,2.21446636387394,68.7184691636885,127.587943512734,179.350627890361,1.26755034821831,0,8.86184860022106,0,0,14.7548316856732,0,0,0,0,126.739430765716,47.8370001228606,7.21656710126366,10.549666852732,63.4006948873437,0.577465791044295,0,0.570762456703795,0,0,0,0,0,0,2.68771405118175,0.283550194484773,0,0,0.383382679165211,0,0,1.86595303986695,0.576479813667846,1.64115163454294,3.4923841860693,0,0,23.9501424431787,3.08482478109971,0,0,76.2491373548453,38.3644860573286,35.6424069089817,42.4011227685511,865.528598961556,134.403137656404,211.154864568387,166.411899058186,75.1045532845455,38.2992656462851,45.0253482537208,98.5118376304637,151.391427904213,59.2733042482154,117.265026345745,89.203379134379,17.4229412045354,2.41151501647669,4.35766729300147,1.99945982364114,0,0,0,98.725440462532,312.42446546879,4.27910715122155,8.10775317338444,3.08214483825575,2.14873155887875,0,1.77327684181734,2.58753089831421,5.13372145118993,18.2948129440174,9.10978977003352,3.86644406388848,6.1981018173709,1.27587750330633,0,0,0,80.2402355843175,127.543482870218,53.1679446451482,187.797687962319,105.808390356717,177.257514498143,201.248950957481,160.103325055146,177.377853163668,81.7437263210789,75.0574926345043,68.2165923604302,53.6071901268071,835.483538893514,518.146569954392,0.206768026122887,0.431428401637234,1.49418580924822,0,4.99306318531491,6.95497674658265,168.961417124587,158.065832486704,143.136648160868,119.81010455408,136.114128251743,84.4483086003939,81.629936544745,78.801153533157,105.649226561311,49.6869293883545,21.8086860257121,39.3953182979262,0,0,0,23.5369618737444,33.1405925772225,35.4035920390445,0.451199612907412,0.770153371044148,21.9617935369519,0,0.73886140225013,1.13733384070897,0.170093705276516,20.2960961136011,9.25363516141736,21.4047685659644,11.5388647986616,1.27438136522519,5.81753206250107,1.79099803777743,0,0,12.3096060055867,57.0745483517488,30.2601907037802,42.2468147755661,0,0,12.0595762979196,7.80072295243825,6.42735719376638,79.0766475629558,46.368633751508,68.1556315784015,54.307609558905,80.6726038960735,49.8857427064946,56.7609338591232,96.0655664628296,0,0,0,0,1.39453664789186,25.1849877464512,9.0614845120878,6.46870518369786,4.7907542728532,7.82939692867565,3.15051172476664,3.00562262158182,92.2952756011975,68.6543351639635,69.9612811700437,50.4118648883328,136.084598194787,35.6387637677049,4.70969184119538,48.7454360050783,36.2388879251592,24.8584168949398,7.48075181821269,7.92551605865041,3.79132610615083,83.8730031234095,2.92456187557541,2.1130029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| ||
|short_description=p1@PDGFRB | |||
}} | }} |
Latest revision as of 03:09, 16 September 2015
Short description: | p1@PDGFRB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PDGFRB_5end |
Coexpression cluster: | C1528_Mesenchymal_Pericytes_mesodermal_Adipocyte_Fibroblast_Multipotent_Hair |
Association with transcript: | 4bp_to_ENST00000520579, NM_002609, uc003lro.2, uc003lrp.2, uc010jhd.2_5end |
EntrezGene: | PDGFRB |
HGNC: | 8804 |
UniProt: | E5RH16P09619Q59F04 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.98e-22 | 76 |
skin fibroblast | 3.59e-10 | 23 |
fat cell | 7.34e-09 | 15 |
muscle cell | 3.74e-07 | 55 |
muscle precursor cell | 5.40e-07 | 58 |
myoblast | 5.40e-07 | 58 |
multi-potent skeletal muscle stem cell | 5.40e-07 | 58 |