FFCP PHASE1:Hg19::chr9:137218262..137218273,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:137218262..137218273,+ to FFCP PHASE1:Hg19::chr9:137218262..137218273,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6256 | |EntrezGene=6256 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10477 | |HGNC=10477 | ||
|TSSclassifier=strong | |||
|UniProt=F1D8Q5,P19793,Q6P3U7 | |UniProt=F1D8Q5,P19793,Q6P3U7 | ||
|association_with_transcript=-42bp_to_NM_002957,uc004cfb.2_5end | |||
|cluster_id=chr9:137218262..137218273,+ | |||
|description=CAGE_peak_5_at_RXRA_5end | |||
|id=chr9:137218262..137218273,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.18e-25!115;UBERON:0003075!2.72e-09!86;UBERON:0007284!2.72e-09!86;UBERON:0001049!7.01e-09!57;UBERON:0005068!7.01e-09!57;UBERON:0006241!7.01e-09!57;UBERON:0007135!7.01e-09!57;UBERON:0002346!8.71e-09!90;UBERON:0004121!1.85e-08!169;UBERON:0000924!3.43e-08!173;UBERON:0006601!3.43e-08!173;UBERON:0000153!1.14e-07!129;UBERON:0007811!1.14e-07!129;UBERON:0000033!1.18e-07!123;UBERON:0005743!3.23e-07!86;UBERON:0001017!4.10e-07!82;UBERON:0000062!6.88e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;1.84e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.05e-30,114;UBERON:0001049,1.92e-09,56;UBERON:0005068,1.92e-09,56;UBERON:0006241,1.92e-09,56;UBERON:0007135,1.92e-09,56;UBERON:0003075,5.90e-08,82;UBERON:0007284,5.90e-08,82;UBERON:0003076,6.71e-08,15;UBERON:0003057,6.71e-08,15;UBERON:0000073,6.97e-08,53;UBERON:0002616,6.97e-08,53;UBERON:0002346,5.22e-07,86;UBERON:0001017,8.48e-07,81;UBERON:0010314,8.70e-07,132 | |||
|phase1_expression=0.726713517082227,0.214100523890983,0.704772020479856,0,0,0.872338524100369,0,0.631719873426831,1.04474251279935,0.491467873003018,0,1.74753097704138,1.31883489114227,0.123766352960047,0.331397375727916,0.672325146451775,0.602694528023977,0.730310090387373,0,0.492484232307152,1.63200552995402,1.56727360739044,0.286235987131057,0.410623275218653,0.251085279189606,0,0,0,0.393364276848904,0.767658796194425,0.928896739896456,0,1.204823675113,0.369754010166788,0,0,0.587200878669695,0.553995408531877,0.802177789880567,1.08505435357926,1.79132379391939,2.26725566213286,1.80302897343931,1.01778767145695,0.755751887377619,1.21292030593908,1.16214518452842,0.822335776043652,0.619412741790207,0.575384784644301,0.512321413058201,0.47296445977717,0.689491361473237,0.645484683583826,0,1.12945403725563,1.91034305040492,0.449446968890169,1.22433556948361,0.641858054152187,0.639337125799041,0.989553900560148,1.19678194572979,0.426224750532694,0,0.56738522469114,0.622822248995575,0.502497330513487,2.60741459210101,0.217188844705117,1.81619850790011,0.368277635987565,0.949387162322653,1.26753171787165,0,0.419317291016752,0.336985893439485,0.300353785683013,0.964353520182481,0.570025487482497,0.19891667719909,0.182664153764634,0,0,0,0,0,0,0,0,0,1.17447437874188,0,1.32171328579026,0,0.263384084775077,0,0,0.205601498999509,0,0,0,0,0.334231370655521,0,0.221533894583621,0.541607727530031,0.128091319725675,0.130059347559878,0.493313713811028,0,0,0.296573126324121,0,1.04535523804977,0,0,0,0.506039384039006,0.318565414324097,0,0,0,0,0,0.236777252044017,0,1.20964045934839,1.06976078313403,0.289648807765598,2.43806866313962,0,0.12786256184353,0,0,0.869079113764942,0.795285947051099,0.973269740605272,0.661743720148475,0.443458794925128,0.614843499851882,1.5062593682237,1.82147644146271,2.22470665670658,0,0.696518949197069,1.19662164466979,0,0,0,0.993812036833525,0,0,0,0,0.550236083880135,1.04497483268405,0.516833518338658,0.71153252537342,0,0.805658634218294,2.28081631715554,1.70843440283719,0,0,0.625098097988558,0.44905874525234,0.900891843866578,3.06633274931766,0,0.366403487860815,1.31780417436063,3.87780264148325,1.3082821564276,0,1.01304409331664,0.397227542439656,0.286836620748814,0.354668382198357,0,1.06748995729705,0.74000264525148,0.622422070799533,0.67355336034844,0.163461903113459,0.454072282934794,0,0.937285727335186,0,0.570471821544449,0.747243402759005,0.822041490506354,0.323745888736263,0.702254033511242,0.61246251376468,0.122834317311768,0.103325781175765,0,0.989067717114227,0,0.718618141816238,0.505008341862199,0.625592599359821,0,2.63386572528503,0.30648779579902,0.300476117813194,0.453728732640084,0,0.213557388818567,0.423863802319124,0.300091096084402,0.206105058476878,0.515281080091258,0.18611685633159,0.675105328965065,0.292311015483596,0.504867548488229,0.276149695926898,0.323292113637624,0,0.403008392910561,0.339121184620975,0.193260853163297,0.818238361772504,1.43402297694502,0.243947412259191,0.530119073285941,0.464775771478074,1.45125477021519,1.00928340350251,1.45990943630332,0,0,1.38134921352481,0.928735856063958,0,0.236613600079688,0,0.482022059766964,0.330881918197182,0.217879444092406,0.474541238222193,0.269662616320329,0,0,0.738155454624648,0,0.8231480226628,4.41026134156626,0,0.982827216677626,2.95394953340702,0,0.368965315629341,0.514703430895577,0.439001141634502,1.1240175325762,1.10581869652794,1.20364978706088,1.62904152655162,2.07986957055916,0,0.695582429850461,1.40890433082986,0.866198686566443,0,0.190254152234598,0.790204397959275,2.57545848628462,0.984868024349589,0.234004265139238,1.33768046059855,0,0.839910640994298,0,0.626909658919938,0,0.766765358330422,0,2.64145302039678,5.80518723514162,6.19715799692934,6.43836410474538,1.26995788584338,1.90994212779139,2.34434894420094,0,1.54241239054985,1.20137223137567,0.571652865261156,0.112131084345361,1.74384027533312,0.4400297149257,0,7.15312891703765,0,0.26593811658487,2.08014873822732,1.54324424557285,0,2.1313774321288,0.57191197463259,0,0,0,0,3.16780749173372,0.301439377059586,0,0.799783929456456,0,3.01354254859276,0,0.479249710983165,0,0,0.144781306667579,0.61642896765115,0.716243852959582,0,0.788123040807709,1.2937654491571,1.41177339907723,1.01637849688985,0,1.54657762555539,0.335032530668698,0.637938751653163,0,2.99161459204025,0.414415513436035,0.858840442033979,0.500170521059677,0.542530047399471,1.87173775377726,1.96271887676878,2.68094105557689,2.10854546986884,1.20378439891088,0,1.03473071292505,1.32845119707087,0.921845842708516,0.260650843404249,2.15381273209015,1.37257369524342,0,0.215714200818617,0.533637789017222,1.5156378572313,0,0.604780586659361,0,0.767309866440312,0.280660094433074,0.896974044789907,1.02341449813341,0.321707842287215,0,0.154209693802656,0.887808626565635,0.492762936082855,1.03850885836724,0.813472649219715,0.241718899183244,0,1.01289087829486,0.34444334449382,0.182091168006717,0.262248829918848,0,0.693138033939733,2.35304930753057,0,0.527758144464379,1.13733384070897,0.340187410553031,1.29549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| ||
|short_description=p5@RXRA | |||
}} | }} |
Latest revision as of 08:14, 16 September 2015
Short description: | p5@RXRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RXRA_5end |
Coexpression cluster: | NA |
Association with transcript: | -42bp_to_NM_002957, uc004cfb.2_5end |
EntrezGene: | RXRA |
HGNC: | 10477 |
UniProt: | F1D8Q5P19793Q6P3U7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.05e-30 | 114 |
neural tube | 1.92e-09 | 56 |
neural rod | 1.92e-09 | 56 |
future spinal cord | 1.92e-09 | 56 |
neural keel | 1.92e-09 | 56 |
neural plate | 5.90e-08 | 82 |
presumptive neural plate | 5.90e-08 | 82 |
posterior neural tube | 6.71e-08 | 15 |
chordal neural plate | 6.71e-08 | 15 |
regional part of nervous system | 6.97e-08 | 53 |
regional part of brain | 6.97e-08 | 53 |
neurectoderm | 5.22e-07 | 86 |
central nervous system | 8.48e-07 | 81 |
structure with developmental contribution from neural crest | 8.70e-07 | 132 |