FFCP PHASE1:Hg19::chr9:75567949..75567960,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:75567949..75567960,- to FFCP PHASE1:Hg19::chr9:75567949..75567960,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=216 | |EntrezGene=216 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=402 | |HGNC=402 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_ENST00000428593,uc004ajd.2_5end | |||
|cluster_id=chr9:75567949..75567960,- | |||
|coexpression_cluster_id=C4830 | |||
|description=CAGE_peak_2_at_ALDH1A1_5end | |||
|id=chr9:75567949..75567960,- | |||
|ontology_enrichment_celltype=CL:0000839!7.52e-11!70;CL:0002139!1.29e-09!24;CL:0000557!5.43e-09!71;CL:0000115!6.34e-09!35;CL:0000766!1.23e-08!76;CL:0002194!5.84e-08!63;CL:0000576!5.84e-08!63;CL:0000040!5.84e-08!63;CL:0000559!5.84e-08!63;CL:0002009!2.91e-07!65;CL:0002057!8.68e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0002139;6.74e-10;24!CL:0000115;8.68e-08;36!CL:0000473;6.76e-07;39!CL:0000234;6.76e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000839,3.03e-11,66;CL:0002139,6.36e-10,24;CL:0000115,1.83e-09,36;CL:0000557,2.12e-09,67;CL:0000766,7.47e-09,72;CL:0002194,6.51e-08,59;CL:0000576,6.51e-08,59;CL:0000040,6.51e-08,59;CL:0000559,6.51e-08,59;CL:0000473,1.38e-07,48;CL:0000234,1.38e-07,48;CL:0002009,2.63e-07,61 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!9.79e-15!659;UBERON:0007023!7.97e-14!115;UBERON:0002405!1.57e-12!115;UBERON:0000467!1.60e-11!625;UBERON:0000480!2.36e-11!626;UBERON:0000922!2.18e-10!612;UBERON:0000926!1.18e-09!448;UBERON:0004120!1.18e-09!448;UBERON:0006603!1.18e-09!448;UBERON:0000490!2.38e-09!138;UBERON:0002050!2.57e-09!605;UBERON:0005423!2.57e-09!605;UBERON:0000923!4.68e-09!604;UBERON:0005291!4.68e-09!604;UBERON:0006598!4.68e-09!604;UBERON:0002532!4.68e-09!604;UBERON:0002371!2.26e-07!80;UBERON:0003081!2.30e-07!216;UBERON:0002193!2.32e-07!112;UBERON:0000055!6.85e-07!69;UBERON:0004921!7.07e-07!129;UBERON:0004185!7.07e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;9.08e-09;22!UBERON:0000160;1.14e-08;17!UBERON:0004921;1.58e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004921,4.23e-10,118;UBERON:0002405,1.42e-09,93;UBERON:0005409,1.13e-08,25;UBERON:0000160,1.15e-08,17;UBERON:0003081,4.84e-08,203;UBERON:0000926,5.07e-08,315;UBERON:0004120,5.07e-08,315;UBERON:0006603,5.07e-08,315;UBERON:0000922,1.61e-07,592;UBERON:0007023,1.93e-07,114;UBERON:0002371,2.10e-07,76;UBERON:0000923,2.18e-07,560;UBERON:0010316,2.18e-07,560;UBERON:0005291,2.18e-07,560;UBERON:0006598,2.18e-07,560;UBERON:0010317,2.18e-07,560;UBERON:0002532,2.18e-07,560;UBERON:0002050,2.55e-07,564;UBERON:0002193,3.32e-07,108;UBERON:0005423,4.06e-07,581;UBERON:0000490,5.32e-07,148;UBERON:0001007,8.76e-07,145;UBERON:0001555,8.76e-07,145;UBERON:0007026,8.76e-07,145 | |||
|phase1_expression=7.44881355009282,1.49870366723688,7.61153782118244,4.00293193412522,9.83314407740033,0,0,0.631719873426831,0.522371256399677,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0.273748850145768,0,0,0,0,1.96682138424452,0.383829398097213,2.32224184974114,0,0,0,0,0,7.34001098337118,1.66198622559563,1.40381113229099,1.73608696572681,75.4595148188545,40.1628145863535,67.7423742877911,1.30858414901608,1.88937971844405,1.21292030593908,3.0215774797739,0.822335776043652,3.09706370895104,2.01384674625505,1.0246428261164,2.12834006899727,3.10271112662957,0.645484683583826,2.70852973188684,1.69418105588344,0.272906150057846,2.02251136000576,3.36692281607993,0.320929027076094,1.27867425159808,2.63881040149373,3.39088217956774,1.70489900213078,2.61188314765726,1.70215567407342,1.86846674698672,3.51748131359441,4.17186334736161,2.6062661364614,1.21079900526674,2.57794345191295,0.949387162322653,0.845021145247767,1.27562579979026,2.93522103711726,4.6054738770063,6.30742949934327,7.55410257476277,0,0.39783335439818,0,0,0,0,1.28019066769952,0.400395987036012,0,0,0,0,0,0.764546456250458,10.5737062863221,5.04457706683382,10.271979306228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255973222308837,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,24.4845176454936,7.9822583086523,7.90513071238134,26.7197314015334,0.364295288292542,0.370784442784429,1.9472843619281,2.08955684759121,5.98310822334893,0.238490624305342,0.571994910780128,0.371457501329565,2.98143611050058,0.860234595106124,1.38856200643038,6.78369530308812,4.61449379830897,4.95212475492121,4.38889429727302,12.4040044401278,6.40379272836078,31.463737599879,22.9612710752214,201.472108015406,30.0196330784248,4.04429388380456,8.91156142669936,22.6821309841563,6.06229306090659,7.65758067286591,4.5994991239765,0,0.732806975721629,0,0,0,0,3.16576279161449,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150238058906597,1.24775401476023,0,0,0,0,0,4.89517026086695,3.53622027030021,2.86919764810153,3.21542117031955,0,0.184099797284599,0,0,0,1.18692414617341,0,0,0,0,0.397589304964456,2.20768491452085,4.35376431064556,3.02785021050754,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,5.90524363699719,0,1.6462960453256,0,86.193423678845,24.5706804169407,56.7158310414148,0,44.0298609984346,7.20584803253807,0,0,0,0.0925884451585296,0,0,1.44331342025273,28.2870188139187,3.87448690978212,69.8733607163597,28.2421162671733,72.8673403058511,0,0,21.667096535691,2.57404691653161,3.71577905721821,0,0,0,0,0,0.766765358330422,145.828318417199,79.067493743877,21.7694521317811,26.229831521887,13.634182810049,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,72.3351677110848,70.7250570997289,0,0,0,10.4373935370448,2.17048642156577,4.11620168390384,0,12.0833262572466,2.37585561880029,0,0,0,31.6221829667095,25.1128545716063,10.5416969741516,0,0,1.42636905040718,25.1919473601588,15.8216768363795,51.0323745233702,0,0,0,0.128343036279748,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0.184369168541703,26.0650843404249,0,0.343143423810856,1.44737618286021,0.862856803274467,1.49418580924822,0,0,0,0.248107807818777,0.767309866440312,0,2.81906128362542,2.04682899626681,1.44768529029247,0,0,0,0,0,0,16.1951662452774,0,0.644566922551274,38.3480256869787,0,38.943951242949,0,0.539107359730903,0,0,0,0,0,4.96606607034921,3.08454505380579,0,0,0,0,0,10.3052142023589,6.27445082459761,0,2.95213181129735,0.976135183992909,62.1337300235765,0,0,0,0,6.42735719376638,1.54673149267395,0.154048617114644,0.614014698904518,0.551346289938122,0.107420244868274,0.145016693914229,0.255679882248303,2.04773681987496,0,0.768760269460425,0.255225424989168,0.4046311234222,0,0.31481234683064,1.3940745403212,0.616067160352178,1.06461206063404,0.869932992075073,3.7064843820784,0.429374660225974,0,0,0,0,0,0,0,5.21630126991613,10.7069441597061,3.29874726567922,0,6.34041284692033,0,0,8.28625864746367,66.5595924567559,115.342425139748,18.2413007220289,0,0,1.32687795048244,10.5228212460903,0,0,0.202910376962704,3.717881977197,1.69017361519345,5.0193973271418,6.28793862483975,0,3.90237170477658,0,0,0,0,0.192444225451024,0,0,64.3002159305402,0,0,0,0,0,0,0,0.952927101831156,1.64544909234478,0,0,0.79312517629427,0,0,1.22520107990516,0,0,0,0,0,18.5760209028396,0,0,0.561594356226918,0,0,0,16.9291777801603,0,0,0,0,0,0,0,0,0,0,42.7319971992053,0.99921590399346,40.8862314754764,0.561421621224659,4.8347699159725,168.205683144826,0,0,0,1.18785872333055,0,0,0.281338832821026,0,0,0,11.1578873420599,6.07824614168525,81.8781430526397,0.102268682502155,0,0,0,12.8895245766439,0,5.32674390439441,0,0,0.969332746095218,0.74214478529481,0,0,0,1.44999915086959,5.46208551770398,0,0,0,0,0,0.885741385813839,0,9.15490417902499,7.40881041539205,10.3441666633742,1.53569778007781,0,0.139423744278603,11.6194890340734,0,0,0,0,0.957003479195758,9.98413768080299,3.19820865611181,0,0,27.2587158316257,0.902382642468723,0.784250137270958,1.00692952185506,0.189753732724185,60.5548365915243,0.632994193584081,0,7.0676535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| ||
|short_description=p2@ALDH1A1 | |||
}} | }} |
Latest revision as of 20:10, 17 September 2015
Short description: | p2@ALDH1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ALDH1A1_5end |
Coexpression cluster: | C4830_small_lung_gastric_hepatoma_Endothelial_mesothelioma_adrenal |
Association with transcript: | 8bp_to_ENST00000428593, uc004ajd.2_5end |
EntrezGene: | ALDH1A1 |
HGNC: | 402 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid lineage restricted progenitor cell | 3.03e-11 | 66 |
endothelial cell of vascular tree | 6.36e-10 | 24 |
endothelial cell | 1.83e-09 | 36 |
granulocyte monocyte progenitor cell | 2.12e-09 | 67 |
myeloid leukocyte | 7.47e-09 | 72 |
monopoietic cell | 6.51e-08 | 59 |
monocyte | 6.51e-08 | 59 |
monoblast | 6.51e-08 | 59 |
promonocyte | 6.51e-08 | 59 |
defensive cell | 1.38e-07 | 48 |
phagocyte | 1.38e-07 | 48 |
macrophage dendritic cell progenitor | 2.63e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 4.23e-10 | 118 |
immune system | 1.42e-09 | 93 |
gastrointestinal system | 1.13e-08 | 25 |
intestine | 1.15e-08 | 17 |
lateral plate mesoderm | 4.84e-08 | 203 |
mesoderm | 5.07e-08 | 315 |
mesoderm-derived structure | 5.07e-08 | 315 |
presumptive mesoderm | 5.07e-08 | 315 |
embryo | 1.61e-07 | 592 |
adult organism | 1.93e-07 | 114 |
bone marrow | 2.10e-07 | 76 |
germ layer | 2.18e-07 | 560 |
germ layer / neural crest | 2.18e-07 | 560 |
embryonic tissue | 2.18e-07 | 560 |
presumptive structure | 2.18e-07 | 560 |
germ layer / neural crest derived structure | 2.18e-07 | 560 |
epiblast (generic) | 2.18e-07 | 560 |
embryonic structure | 2.55e-07 | 564 |
hemolymphoid system | 3.32e-07 | 108 |
developing anatomical structure | 4.06e-07 | 581 |
unilaminar epithelium | 5.32e-07 | 148 |
digestive system | 8.76e-07 | 145 |
digestive tract | 8.76e-07 | 145 |
primitive gut | 8.76e-07 | 145 |