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{{f5samples
{{f5samples
|id=FF:10727-110A7
|DRA_sample_Accession=CAGE@SAMD00005770
|name=lymphangiectasia cell line:DS-1
|accession_numbers=CAGE;DRX007924;DRR008796;DRZ000221;DRZ001606;DRZ011571;DRZ012956
|sample_id=10727
|ancestors_in_anatomy_facet=UBERON:0000055,UBERON:0004111,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0001062,UBERON:0000480
|rna_tube_id=110A7
|rna_box=110
|rna_position=A7
|sample_cell_lot=
|sample_cell_catalog=CRL-11102
|sample_company=ATCC
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=blood
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.15
|rna_od260/280=2.11
|sample_cell_type=b cell
|sample_cell_line=DS-1
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=lymphangiectasia
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=37.58402
|rna_concentration=0.79966
|sample_note=
|profile_hcage=CNhs11852,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000055,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000480,UBERON:0001062,UBERON:0004111
|ancestors_in_disease_facet=DOID:4
|ancestors_in_disease_facet=DOID:4
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fonse_cell_line=FF:10727-110A7
|fonse_cell_line=FF:10727-110A7
|fonse_cell_line_closure=FF:10727-110A7
|fonse_cell_line_closure=FF:10727-110A7
Line 66: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|comment=
|created_by=
|creation_date=
|def=
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|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
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|rna_od260/280=2.11
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|sample_cell_catalog=CRL-11102
|sample_cell_line=DS-1
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|sample_cell_type=b cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
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|sample_disease=lymphangiectasia
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|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.98657990851055e-260!GO:0043227;membrane-bound organelle;1.29501899754172e-230!GO:0043231;intracellular membrane-bound organelle;2.6576591856011e-230!GO:0043226;organelle;8.23564618927244e-221!GO:0043229;intracellular organelle;5.01917828422147e-220!GO:0005737;cytoplasm;2.51339154395396e-182!GO:0044422;organelle part;3.89178626828949e-165!GO:0044446;intracellular organelle part;1.3233717970958e-162!GO:0044444;cytoplasmic part;2.1350515822008e-137!GO:0032991;macromolecular complex;1.60533356174885e-113!GO:0044237;cellular metabolic process;2.32458261484536e-107!GO:0044238;primary metabolic process;1.63000243082632e-102!GO:0043170;macromolecule metabolic process;9.46465517108719e-97!GO:0005634;nucleus;4.01156989323444e-95!GO:0030529;ribonucleoprotein complex;1.08664507290661e-93!GO:0044428;nuclear part;2.11687742008418e-87!GO:0043233;organelle lumen;6.08552855245179e-86!GO:0031974;membrane-enclosed lumen;6.08552855245179e-86!GO:0005739;mitochondrion;1.04271626170261e-80!GO:0003723;RNA binding;1.19470604400756e-80!GO:0005515;protein binding;6.39046808782333e-68!GO:0031090;organelle membrane;9.24482470117448e-61!GO:0043283;biopolymer metabolic process;1.86029035396692e-58!GO:0043234;protein complex;2.31080466435734e-58!GO:0006412;translation;5.57827305316894e-57!GO:0006396;RNA processing;8.26419971481965e-56!GO:0005840;ribosome;3.57238232895641e-55!GO:0044429;mitochondrial part;9.11112630434257e-55!GO:0031981;nuclear lumen;9.65075904230743e-54!GO:0019538;protein metabolic process;3.74126208191403e-53!GO:0031967;organelle envelope;1.38095607909845e-50!GO:0044260;cellular macromolecule metabolic process;2.88896314763222e-50!GO:0031975;envelope;3.56692489526914e-50!GO:0010467;gene expression;1.12934770743924e-49!GO:0044267;cellular protein metabolic process;1.40902402621805e-49!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.47574976820361e-49!GO:0003735;structural constituent of ribosome;2.70792507257344e-47!GO:0009058;biosynthetic process;3.37566359747528e-47!GO:0033036;macromolecule localization;2.63147887993595e-46!GO:0009059;macromolecule biosynthetic process;3.43039403556861e-46!GO:0015031;protein transport;4.13044072393535e-45!GO:0044249;cellular biosynthetic process;2.71200137192125e-43!GO:0045184;establishment of protein localization;4.93421916800128e-43!GO:0016071;mRNA metabolic process;5.8113601429351e-43!GO:0008104;protein localization;1.30933818207071e-42!GO:0033279;ribosomal subunit;3.16740759782377e-41!GO:0016043;cellular component organization and biogenesis;4.48143901000165e-39!GO:0046907;intracellular transport;1.03065033465723e-37!GO:0008380;RNA splicing;3.8188709204179e-37!GO:0005829;cytosol;7.60401726733636e-37!GO:0006397;mRNA processing;2.63818732738447e-36!GO:0005740;mitochondrial envelope;3.95600813864675e-35!GO:0006259;DNA metabolic process;4.3265424328222e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.59226597022657e-35!GO:0005654;nucleoplasm;4.31890818338044e-34!GO:0019866;organelle inner membrane;5.86966151887325e-33!GO:0006996;organelle organization and biogenesis;6.22543017345713e-33!GO:0006886;intracellular protein transport;1.21427836167128e-32!GO:0031966;mitochondrial membrane;1.38126680830326e-32!GO:0003676;nucleic acid binding;6.30245211622363e-32!GO:0065003;macromolecular complex assembly;8.51361924101701e-32!GO:0043228;non-membrane-bound organelle;2.20442664668111e-30!GO:0043232;intracellular non-membrane-bound organelle;2.20442664668111e-30!GO:0005743;mitochondrial inner membrane;2.96567990835244e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.19571228175396e-29!GO:0000166;nucleotide binding;6.14795616853587e-29!GO:0051649;establishment of cellular localization;8.9551314191678e-29!GO:0051641;cellular localization;1.74526314181365e-28!GO:0005681;spliceosome;3.1040970895914e-28!GO:0044451;nucleoplasm part;3.43980668424152e-27!GO:0022607;cellular component assembly;4.46702211159369e-27!GO:0007049;cell cycle;7.88984096013804e-27!GO:0044445;cytosolic part;2.15253749785364e-26!GO:0012505;endomembrane system;3.07318172922686e-26!GO:0006119;oxidative phosphorylation;1.10558399798214e-23!GO:0044455;mitochondrial membrane part;1.68514909608957e-23!GO:0044265;cellular macromolecule catabolic process;1.97751426421224e-23!GO:0031980;mitochondrial lumen;3.46895954855401e-23!GO:0005759;mitochondrial matrix;3.46895954855401e-23!GO:0006512;ubiquitin cycle;6.34735110492425e-23!GO:0022402;cell cycle process;3.44876308812278e-22!GO:0016070;RNA metabolic process;3.49842675417739e-22!GO:0016874;ligase activity;1.37434737120322e-21!GO:0015934;large ribosomal subunit;3.26862458579663e-21!GO:0015935;small ribosomal subunit;4.11762397772908e-21!GO:0006974;response to DNA damage stimulus;8.11563683428361e-21!GO:0005730;nucleolus;1.27187153030021e-20!GO:0032553;ribonucleotide binding;1.85439219064474e-20!GO:0032555;purine ribonucleotide binding;1.85439219064474e-20!GO:0005783;endoplasmic reticulum;2.40084110112353e-20!GO:0017076;purine nucleotide binding;2.99661304177785e-20!GO:0016462;pyrophosphatase activity;3.94346353314674e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.5090529348201e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;7.10863692581081e-20!GO:0005694;chromosome;7.87500156015189e-20!GO:0044432;endoplasmic reticulum part;8.15215718598112e-20!GO:0006457;protein folding;1.88636474102891e-19!GO:0005524;ATP binding;3.4029209175613e-19!GO:0022618;protein-RNA complex assembly;3.46306919981888e-19!GO:0032559;adenyl ribonucleotide binding;4.69315910996063e-19!GO:0043285;biopolymer catabolic process;4.73151497128719e-19!GO:0005746;mitochondrial respiratory chain;5.07824334874634e-19!GO:0017111;nucleoside-triphosphatase activity;5.14647461979838e-19!GO:0008134;transcription factor binding;6.98556102969276e-19!GO:0006511;ubiquitin-dependent protein catabolic process;6.98556102969276e-19!GO:0051603;proteolysis involved in cellular protein catabolic process;7.04245834239574e-19!GO:0019941;modification-dependent protein catabolic process;9.53289496939954e-19!GO:0043632;modification-dependent macromolecule catabolic process;9.53289496939954e-19!GO:0030554;adenyl nucleotide binding;1.34404174821801e-18!GO:0044248;cellular catabolic process;2.22377253991788e-18!GO:0044257;cellular protein catabolic process;2.27790189747661e-18!GO:0000278;mitotic cell cycle;2.34632713527901e-18!GO:0043412;biopolymer modification;2.40090588953368e-18!GO:0009057;macromolecule catabolic process;3.04308180833626e-18!GO:0044427;chromosomal part;1.89472948749966e-17!GO:0006281;DNA repair;4.13833442444049e-17!GO:0000502;proteasome complex (sensu Eukaryota);6.78692871685091e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.28211775934454e-16!GO:0003954;NADH dehydrogenase activity;1.28211775934454e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.28211775934454e-16!GO:0051276;chromosome organization and biogenesis;1.37961686027817e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.78828352185702e-16!GO:0012501;programmed cell death;2.86535900134061e-16!GO:0005761;mitochondrial ribosome;2.87240931507721e-16!GO:0000313;organellar ribosome;2.87240931507721e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.98800689429344e-16!GO:0006915;apoptosis;3.06522170203499e-16!GO:0042254;ribosome biogenesis and assembly;4.00607688658154e-16!GO:0005789;endoplasmic reticulum membrane;4.0157038035118e-16!GO:0008135;translation factor activity, nucleic acid binding;5.02963323642192e-16!GO:0006605;protein targeting;5.47632667221188e-16!GO:0005635;nuclear envelope;8.63518081301897e-16!GO:0031965;nuclear membrane;1.37554652941823e-15!GO:0006464;protein modification process;1.74389865653175e-15!GO:0048770;pigment granule;2.38214346334307e-15!GO:0042470;melanosome;2.38214346334307e-15!GO:0000087;M phase of mitotic cell cycle;2.40254801211975e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.49032147220018e-15!GO:0007067;mitosis;3.08921490862117e-15!GO:0022403;cell cycle phase;3.80519053144065e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;4.39085099861777e-15!GO:0000375;RNA splicing, via transesterification reactions;4.39085099861777e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.39085099861777e-15!GO:0042775;organelle ATP synthesis coupled electron transport;4.98777927250261e-15!GO:0042773;ATP synthesis coupled electron transport;4.98777927250261e-15!GO:0006913;nucleocytoplasmic transport;8.44833405819854e-15!GO:0030964;NADH dehydrogenase complex (quinone);1.09094608692395e-14!GO:0045271;respiratory chain complex I;1.09094608692395e-14!GO:0005747;mitochondrial respiratory chain complex I;1.09094608692395e-14!GO:0051186;cofactor metabolic process;1.37848239841764e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.5378515766487e-14!GO:0008219;cell death;1.86471664972234e-14!GO:0016265;death;1.86471664972234e-14!GO:0051169;nuclear transport;1.95743678022309e-14!GO:0044453;nuclear membrane part;3.20990719574193e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.93198915707208e-14!GO:0016604;nuclear body;4.06860258649789e-14!GO:0016887;ATPase activity;5.04815095014134e-14!GO:0030163;protein catabolic process;5.97829328163604e-14!GO:0048193;Golgi vesicle transport;7.46966980106361e-14!GO:0042623;ATPase activity, coupled;8.22553133721966e-14!GO:0006260;DNA replication;8.66156810562059e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;9.44214473904706e-14!GO:0051301;cell division;1.49799227734581e-13!GO:0006325;establishment and/or maintenance of chromatin architecture;2.82293644733272e-13!GO:0043687;post-translational protein modification;3.20362732704232e-13!GO:0051082;unfolded protein binding;6.31544286798073e-13!GO:0006399;tRNA metabolic process;6.6556173073479e-13!GO:0051726;regulation of cell cycle;9.36979209541558e-13!GO:0000074;regulation of progression through cell cycle;9.7463360869527e-13!GO:0005794;Golgi apparatus;1.0453349132076e-12!GO:0006323;DNA packaging;1.10110760915566e-12!GO:0000279;M phase;1.11076719921426e-12!GO:0009719;response to endogenous stimulus;1.45415071792004e-12!GO:0005643;nuclear pore;3.85787435137662e-12!GO:0003743;translation initiation factor activity;4.35801277391462e-12!GO:0006413;translational initiation;5.68123783043894e-12!GO:0003712;transcription cofactor activity;5.69247032314564e-12!GO:0065002;intracellular protein transport across a membrane;8.46616799187071e-12!GO:0004386;helicase activity;1.49437078162221e-11!GO:0006732;coenzyme metabolic process;2.01457364757658e-11!GO:0009259;ribonucleotide metabolic process;2.82898199384791e-11!GO:0006163;purine nucleotide metabolic process;3.5497042315394e-11!GO:0006403;RNA localization;3.64318793299664e-11!GO:0042981;regulation of apoptosis;3.70723586611616e-11!GO:0050657;nucleic acid transport;4.70711608811694e-11!GO:0051236;establishment of RNA localization;4.70711608811694e-11!GO:0050658;RNA transport;4.70711608811694e-11!GO:0006364;rRNA processing;5.05302414399543e-11!GO:0043067;regulation of programmed cell death;5.58716363875636e-11!GO:0006164;purine nucleotide biosynthetic process;6.04290327710117e-11!GO:0016607;nuclear speck;7.28103587008105e-11!GO:0006446;regulation of translational initiation;7.28103587008105e-11!GO:0008639;small protein conjugating enzyme activity;7.89649594497614e-11!GO:0016072;rRNA metabolic process;8.05110517415331e-11!GO:0009260;ribonucleotide biosynthetic process;1.56208758918415e-10!GO:0004842;ubiquitin-protein ligase activity;1.70681217940114e-10!GO:0017038;protein import;2.4040820654919e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.83455775406163e-10!GO:0004812;aminoacyl-tRNA ligase activity;2.83455775406163e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.83455775406163e-10!GO:0009150;purine ribonucleotide metabolic process;3.20477903336339e-10!GO:0016787;hydrolase activity;3.23497338750261e-10!GO:0008026;ATP-dependent helicase activity;3.64896396437882e-10!GO:0005793;ER-Golgi intermediate compartment;3.66810648644114e-10!GO:0046930;pore complex;4.20407577731265e-10!GO:0019787;small conjugating protein ligase activity;4.64700490783406e-10!GO:0043038;amino acid activation;5.37144775602602e-10!GO:0006418;tRNA aminoacylation for protein translation;5.37144775602602e-10!GO:0043039;tRNA aminoacylation;5.37144775602602e-10!GO:0009152;purine ribonucleotide biosynthetic process;5.42351626638449e-10!GO:0016740;transferase activity;6.44167562028814e-10!GO:0008565;protein transporter activity;7.12487970956797e-10!GO:0065004;protein-DNA complex assembly;9.1482820917639e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.11783186043799e-09!GO:0000785;chromatin;1.1341944105781e-09!GO:0006333;chromatin assembly or disassembly;1.13801492765043e-09!GO:0009056;catabolic process;1.5739502951615e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.64276656262771e-09!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.6954649036561e-09!GO:0016192;vesicle-mediated transport;1.94003274958084e-09!GO:0016779;nucleotidyltransferase activity;2.18604933719544e-09!GO:0003697;single-stranded DNA binding;2.4680042934216e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.93022483261713e-09!GO:0051028;mRNA transport;3.15354212396929e-09!GO:0016568;chromatin modification;3.54014968104966e-09!GO:0030532;small nuclear ribonucleoprotein complex;3.9029471808959e-09!GO:0006793;phosphorus metabolic process;4.76478534829947e-09!GO:0006796;phosphate metabolic process;4.76478534829947e-09!GO:0015078;hydrogen ion transmembrane transporter activity;5.3904297417872e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.90730972469029e-09!GO:0043566;structure-specific DNA binding;8.54860208565786e-09!GO:0007005;mitochondrion organization and biogenesis;9.79216309715645e-09!GO:0051188;cofactor biosynthetic process;1.0580559381307e-08!GO:0009060;aerobic respiration;1.2123420561718e-08!GO:0009142;nucleoside triphosphate biosynthetic process;1.46327911668865e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.46327911668865e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.7904878261602e-08!GO:0016881;acid-amino acid ligase activity;2.04158505384796e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.24578556814428e-08!GO:0009141;nucleoside triphosphate metabolic process;2.56066241234704e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.04019266671952e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.04019266671952e-08!GO:0019829;cation-transporting ATPase activity;3.26465474441953e-08!GO:0015986;ATP synthesis coupled proton transport;3.50408233956361e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.50408233956361e-08!GO:0006461;protein complex assembly;3.54931161564089e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.96672218879209e-08!GO:0006366;transcription from RNA polymerase II promoter;4.14922641533302e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.43534831660221e-08!GO:0009144;purine nucleoside triphosphate metabolic process;4.43534831660221e-08!GO:0009055;electron carrier activity;4.54734279620695e-08!GO:0005839;proteasome core complex (sensu Eukaryota);4.56243111514767e-08!GO:0005768;endosome;6.89016224377446e-08!GO:0005773;vacuole;8.44624307943768e-08!GO:0045333;cellular respiration;1.2358771536304e-07!GO:0016310;phosphorylation;1.52320337396442e-07!GO:0051170;nuclear import;1.63993051297546e-07!GO:0006261;DNA-dependent DNA replication;2.00337651527892e-07!GO:0004298;threonine endopeptidase activity;2.26611866706975e-07!GO:0000323;lytic vacuole;2.34758460985194e-07!GO:0005764;lysosome;2.34758460985194e-07!GO:0006754;ATP biosynthetic process;2.66640452287777e-07!GO:0006753;nucleoside phosphate metabolic process;2.66640452287777e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.93059390506251e-07!GO:0006606;protein import into nucleus;3.17289542410895e-07!GO:0046034;ATP metabolic process;5.05714339069298e-07!GO:0032446;protein modification by small protein conjugation;5.16825850108788e-07!GO:0009117;nucleotide metabolic process;5.72127458562358e-07!GO:0000775;chromosome, pericentric region;6.33145672911387e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.61712967000384e-07!GO:0045259;proton-transporting ATP synthase complex;6.61712967000384e-07!GO:0043069;negative regulation of programmed cell death;6.63433468739904e-07!GO:0030120;vesicle coat;6.71988570079796e-07!GO:0030662;coated vesicle membrane;6.71988570079796e-07!GO:0051246;regulation of protein metabolic process;7.55119654111882e-07!GO:0043066;negative regulation of apoptosis;8.38062112346852e-07!GO:0050794;regulation of cellular process;8.78002790167074e-07!GO:0009108;coenzyme biosynthetic process;9.98994527896553e-07!GO:0006099;tricarboxylic acid cycle;1.09448841195985e-06!GO:0046356;acetyl-CoA catabolic process;1.09448841195985e-06!GO:0016567;protein ubiquitination;1.13811994131665e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.20574227396189e-06!GO:0000245;spliceosome assembly;1.38508940854673e-06!GO:0005667;transcription factor complex;1.38821028509841e-06!GO:0044431;Golgi apparatus part;1.39019560442169e-06!GO:0006084;acetyl-CoA metabolic process;1.44734016018728e-06!GO:0006916;anti-apoptosis;1.45191867280357e-06!GO:0000151;ubiquitin ligase complex;1.46003484007681e-06!GO:0003713;transcription coactivator activity;2.01176568949035e-06!GO:0065009;regulation of a molecular function;2.09481372831717e-06!GO:0015630;microtubule cytoskeleton;2.45861368517978e-06!GO:0006334;nucleosome assembly;2.60864970365733e-06!GO:0006613;cotranslational protein targeting to membrane;2.76886354588966e-06!GO:0031497;chromatin assembly;2.89686343635976e-06!GO:0045786;negative regulation of progression through cell cycle;2.91787303634808e-06!GO:0051168;nuclear export;2.9317370334402e-06!GO:0006752;group transfer coenzyme metabolic process;3.0770747169855e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.0770747169855e-06!GO:0048475;coated membrane;3.24840387033179e-06!GO:0030117;membrane coat;3.24840387033179e-06!GO:0003899;DNA-directed RNA polymerase activity;3.2900411107085e-06!GO:0016563;transcription activator activity;3.33495455379722e-06!GO:0048523;negative regulation of cellular process;3.47299673118153e-06!GO:0005819;spindle;4.33370508725591e-06!GO:0000075;cell cycle checkpoint;5.26824323727397e-06!GO:0043623;cellular protein complex assembly;5.71323474193153e-06!GO:0006401;RNA catabolic process;6.11304129034508e-06!GO:0016564;transcription repressor activity;6.11304129034508e-06!GO:0005813;centrosome;6.3189515622588e-06!GO:0051329;interphase of mitotic cell cycle;6.92582954679931e-06!GO:0005762;mitochondrial large ribosomal subunit;8.09240460204516e-06!GO:0000315;organellar large ribosomal subunit;8.09240460204516e-06!GO:0051187;cofactor catabolic process;9.62683567826644e-06!GO:0003714;transcription corepressor activity;1.15026576670311e-05!GO:0009109;coenzyme catabolic process;1.24134991004967e-05!GO:0003724;RNA helicase activity;1.37671353135573e-05!GO:0019899;enzyme binding;1.45190522868838e-05!GO:0005815;microtubule organizing center;1.70720151238777e-05!GO:0007243;protein kinase cascade;1.82298809318917e-05!GO:0031324;negative regulation of cellular metabolic process;1.83197964116052e-05!GO:0000139;Golgi membrane;1.97751925455771e-05!GO:0051325;interphase;2.00522259857168e-05!GO:0008654;phospholipid biosynthetic process;2.16439379250136e-05!GO:0045454;cell redox homeostasis;2.29878624095712e-05!GO:0000314;organellar small ribosomal subunit;2.64339378031905e-05!GO:0005763;mitochondrial small ribosomal subunit;2.64339378031905e-05!GO:0005770;late endosome;2.70116690846484e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.80639130688935e-05!GO:0019222;regulation of metabolic process;3.22986420382749e-05!GO:0005657;replication fork;3.62867642417034e-05!GO:0043021;ribonucleoprotein binding;3.67175168839161e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.22133557437297e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;4.22133557437297e-05!GO:0015399;primary active transmembrane transporter activity;4.22133557437297e-05!GO:0005798;Golgi-associated vesicle;4.30202756932534e-05!GO:0007051;spindle organization and biogenesis;4.91868506634636e-05!GO:0048519;negative regulation of biological process;5.53411658623584e-05!GO:0005788;endoplasmic reticulum lumen;5.94964571794824e-05!GO:0008632;apoptotic program;6.1959188746641e-05!GO:0006402;mRNA catabolic process;6.68995083758192e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.76522196616562e-05!GO:0006091;generation of precursor metabolites and energy;8.11308691239167e-05!GO:0044452;nucleolar part;8.8333060393639e-05!GO:0043065;positive regulation of apoptosis;9.36285085844576e-05!GO:0006383;transcription from RNA polymerase III promoter;9.72953314402477e-05!GO:0008094;DNA-dependent ATPase activity;9.76185594433262e-05!GO:0006612;protein targeting to membrane;9.90330567937012e-05!GO:0044440;endosomal part;9.90330567937012e-05!GO:0010008;endosome membrane;9.90330567937012e-05!GO:0009165;nucleotide biosynthetic process;0.000101388163747727!GO:0051427;hormone receptor binding;0.000118154990447686!GO:0003729;mRNA binding;0.000135263070755146!GO:0043068;positive regulation of programmed cell death;0.000135637318729599!GO:0008033;tRNA processing;0.000142631738479078!GO:0030384;phosphoinositide metabolic process;0.000145228414309275!GO:0006414;translational elongation;0.000149480582341137!GO:0015992;proton transport;0.000150069233323074!GO:0006818;hydrogen transport;0.000150486790631923!GO:0016853;isomerase activity;0.000157787665553483!GO:0030880;RNA polymerase complex;0.000158594118326263!GO:0005048;signal sequence binding;0.000166656817210833!GO:0004527;exonuclease activity;0.000167664208982486!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000168870726908635!GO:0006302;double-strand break repair;0.000185470780995282!GO:0046489;phosphoinositide biosynthetic process;0.000187899756906925!GO:0003924;GTPase activity;0.000195303717854631!GO:0016363;nuclear matrix;0.00020200672773823!GO:0043681;protein import into mitochondrion;0.000202481247928036!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000203657762476719!GO:0050790;regulation of catalytic activity;0.000218274017037503!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000220582823861433!GO:0033116;ER-Golgi intermediate compartment membrane;0.000227583904010543!GO:0035257;nuclear hormone receptor binding;0.000229797244397614!GO:0016741;transferase activity, transferring one-carbon groups;0.000241327620892155!GO:0003690;double-stranded DNA binding;0.000244783859271442!GO:0000776;kinetochore;0.000264916495970591!GO:0031072;heat shock protein binding;0.000265125206180868!GO:0004674;protein serine/threonine kinase activity;0.000286774016027646!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000301739889624882!GO:0006917;induction of apoptosis;0.000307937594603942!GO:0030176;integral to endoplasmic reticulum membrane;0.000316667626810382!GO:0046474;glycerophospholipid biosynthetic process;0.00032526967717201!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000327981642140811!GO:0000428;DNA-directed RNA polymerase complex;0.000327981642140811!GO:0031988;membrane-bound vesicle;0.000334211155913675!GO:0008186;RNA-dependent ATPase activity;0.000337860189703018!GO:0004576;oligosaccharyl transferase activity;0.000353172499333372!GO:0008168;methyltransferase activity;0.000353290766502336!GO:0004518;nuclease activity;0.00037872905125436!GO:0042802;identical protein binding;0.000384339608752873!GO:0000287;magnesium ion binding;0.000401353770803327!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00042918422302505!GO:0012502;induction of programmed cell death;0.000432543394698388!GO:0009892;negative regulation of metabolic process;0.000445110595788693!GO:0006891;intra-Golgi vesicle-mediated transport;0.000481373967326788!GO:0003678;DNA helicase activity;0.000488867837221792!GO:0006352;transcription initiation;0.000522723212518369!GO:0045045;secretory pathway;0.00054230134274884!GO:0051252;regulation of RNA metabolic process;0.000560331881716477!GO:0031968;organelle outer membrane;0.000590358949934324!GO:0007088;regulation of mitosis;0.00059885369426037!GO:0031323;regulation of cellular metabolic process;0.000599568671692978!GO:0048471;perinuclear region of cytoplasm;0.000601360251925631!GO:0048500;signal recognition particle;0.000607041388250149!GO:0044262;cellular carbohydrate metabolic process;0.000628562680148354!GO:0006310;DNA recombination;0.000629409518984479!GO:0006839;mitochondrial transport;0.000633803467915212!GO:0005525;GTP binding;0.000634546033505547!GO:0005741;mitochondrial outer membrane;0.00065429760438095!GO:0000786;nucleosome;0.00069375882199228!GO:0015980;energy derivation by oxidation of organic compounds;0.00069375882199228!GO:0019867;outer membrane;0.000703436423681264!GO:0043488;regulation of mRNA stability;0.000704854748756833!GO:0043487;regulation of RNA stability;0.000704854748756833!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000714678166027814!GO:0043492;ATPase activity, coupled to movement of substances;0.000723112002934745!GO:0003682;chromatin binding;0.000726881823201581!GO:0008250;oligosaccharyl transferase complex;0.000745948682274856!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000754736739103768!GO:0031982;vesicle;0.000759462346257!GO:0000082;G1/S transition of mitotic cell cycle;0.000770458819596181!GO:0022890;inorganic cation transmembrane transporter activity;0.000782458764158173!GO:0016023;cytoplasmic membrane-bound vesicle;0.000799450789233932!GO:0005637;nuclear inner membrane;0.000838740064906559!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000839435293073664!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000882488817430249!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000882488817430249!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000882488817430249!GO:0051789;response to protein stimulus;0.000883030435825302!GO:0006986;response to unfolded protein;0.000883030435825302!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00090180843653228!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000906410938558235!GO:0000049;tRNA binding;0.000913351965140378!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.000927955389557946!GO:0004004;ATP-dependent RNA helicase activity;0.00095939088315755!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.000967131148434942!GO:0006417;regulation of translation;0.000984131337736836!GO:0051920;peroxiredoxin activity;0.00100325695754375!GO:0008610;lipid biosynthetic process;0.00101922682427557!GO:0003684;damaged DNA binding;0.00102604182809547!GO:0050789;regulation of biological process;0.00103413868006404!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00105805914695502!GO:0030433;ER-associated protein catabolic process;0.00108225836426363!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00108225836426363!GO:0006626;protein targeting to mitochondrion;0.0011049017891704!GO:0005684;U2-dependent spliceosome;0.00112202760580905!GO:0008637;apoptotic mitochondrial changes;0.00118749944466063!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00124959331443515!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00124959331443515!GO:0030867;rough endoplasmic reticulum membrane;0.00126127324636903!GO:0016481;negative regulation of transcription;0.00129701007629468!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00133506139582784!GO:0015002;heme-copper terminal oxidase activity;0.00133506139582784!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00133506139582784!GO:0004129;cytochrome-c oxidase activity;0.00133506139582784!GO:0006611;protein export from nucleus;0.00138176900302214!GO:0018196;peptidyl-asparagine modification;0.00139286976570518!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00139286976570518!GO:0030658;transport vesicle membrane;0.00144089729410972!GO:0005885;Arp2/3 protein complex;0.00144899938105368!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00146695531468812!GO:0030127;COPII vesicle coat;0.00148372471480032!GO:0012507;ER to Golgi transport vesicle membrane;0.00148372471480032!GO:0006650;glycerophospholipid metabolic process;0.00148674863463317!GO:0007093;mitotic cell cycle checkpoint;0.00151135133858584!GO:0016491;oxidoreductase activity;0.00152146074071123!GO:0006506;GPI anchor biosynthetic process;0.00158095242997154!GO:0030134;ER to Golgi transport vesicle;0.00159698525170178!GO:0006497;protein amino acid lipidation;0.00160253047393818!GO:0000059;protein import into nucleus, docking;0.00160279709503803!GO:0032508;DNA duplex unwinding;0.00161121608018461!GO:0032392;DNA geometric change;0.00161121608018461!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00161121608018461!GO:0045047;protein targeting to ER;0.00161121608018461!GO:0008234;cysteine-type peptidase activity;0.00167842964775094!GO:0046983;protein dimerization activity;0.00172018736457304!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00173303543696538!GO:0043284;biopolymer biosynthetic process;0.00174569659868986!GO:0008312;7S RNA binding;0.00178911060158719!GO:0009116;nucleoside metabolic process;0.00185776316061694!GO:0030663;COPI coated vesicle membrane;0.00189269894722741!GO:0030126;COPI vesicle coat;0.00189269894722741!GO:0007006;mitochondrial membrane organization and biogenesis;0.00194980692124539!GO:0006405;RNA export from nucleus;0.00207313132483119!GO:0031410;cytoplasmic vesicle;0.00218282187256482!GO:0016251;general RNA polymerase II transcription factor activity;0.00225326418995222!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00225458880983591!GO:0046483;heterocycle metabolic process;0.00226466054790441!GO:0006505;GPI anchor metabolic process;0.00231671756336118!GO:0006268;DNA unwinding during replication;0.0024449507614351!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00253083880695329!GO:0030137;COPI-coated vesicle;0.0025635285496249!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00257219014382987!GO:0046822;regulation of nucleocytoplasmic transport;0.00257917090779706!GO:0032940;secretion by cell;0.0026598451335531!GO:0005876;spindle microtubule;0.00270689368860983!GO:0008139;nuclear localization sequence binding;0.00284335013075767!GO:0030660;Golgi-associated vesicle membrane;0.00300379212334314!GO:0006350;transcription;0.00319586930696973!GO:0006595;polyamine metabolic process;0.00320764019812276!GO:0042770;DNA damage response, signal transduction;0.00320764019812276!GO:0008022;protein C-terminus binding;0.00325323087375266!GO:0046966;thyroid hormone receptor binding;0.0032643805478715!GO:0007059;chromosome segregation;0.00326926745807771!GO:0005774;vacuolar membrane;0.00345953996212658!GO:0005758;mitochondrial intermembrane space;0.00358983944412302!GO:0030133;transport vesicle;0.00360913572783485!GO:0003756;protein disulfide isomerase activity;0.00370094677452323!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.00370094677452323!GO:0046467;membrane lipid biosynthetic process;0.00377308411571108!GO:0031124;mRNA 3'-end processing;0.00430210761288035!GO:0015631;tubulin binding;0.004308745784008!GO:0051098;regulation of binding;0.00431078057606178!GO:0019752;carboxylic acid metabolic process;0.00438331210659939!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00444151572697325!GO:0051052;regulation of DNA metabolic process;0.00462956139871519!GO:0008276;protein methyltransferase activity;0.00480517254313406!GO:0031326;regulation of cellular biosynthetic process;0.00484154458293358!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0048538383176447!GO:0042158;lipoprotein biosynthetic process;0.00486449157890475!GO:0051539;4 iron, 4 sulfur cluster binding;0.00489557358506284!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00501053625390338!GO:0006672;ceramide metabolic process;0.00506109154456803!GO:0006082;organic acid metabolic process;0.00508293955126585!GO:0016126;sterol biosynthetic process;0.00509455981989211!GO:0032561;guanyl ribonucleotide binding;0.00511813094173659!GO:0019001;guanyl nucleotide binding;0.00511813094173659!GO:0007052;mitotic spindle organization and biogenesis;0.00514720698394341!GO:0009112;nucleobase metabolic process;0.00540709042488077!GO:0051087;chaperone binding;0.00544571914474051!GO:0006520;amino acid metabolic process;0.00546906856892774!GO:0006144;purine base metabolic process;0.00577052263196949!GO:0019843;rRNA binding;0.00601741052810774!GO:0031902;late endosome membrane;0.00617591776957165!GO:0016859;cis-trans isomerase activity;0.00617648488390291!GO:0016791;phosphoric monoester hydrolase activity;0.00617648488390291!GO:0006007;glucose catabolic process;0.00636489942407003!GO:0032200;telomere organization and biogenesis;0.00637582341204855!GO:0000723;telomere maintenance;0.00637582341204855!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00639975902532209!GO:0033673;negative regulation of kinase activity;0.00639975902532209!GO:0006469;negative regulation of protein kinase activity;0.00639975902532209!GO:0007034;vacuolar transport;0.00650226483414732!GO:0031252;leading edge;0.00657661910757182!GO:0009451;RNA modification;0.00657903038393067!GO:0009124;nucleoside monophosphate biosynthetic process;0.00659295141551645!GO:0009123;nucleoside monophosphate metabolic process;0.00659295141551645!GO:0005769;early endosome;0.00662078760817485!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0068558189830279!GO:0051338;regulation of transferase activity;0.00701437406806958!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00702109899356758!GO:0043549;regulation of kinase activity;0.00719820099668252!GO:0031970;organelle envelope lumen;0.00726290010687429!GO:0043414;biopolymer methylation;0.00731960693144619!GO:0032259;methylation;0.00733324821855435!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00739037364109524!GO:0006270;DNA replication initiation;0.00747938297105398!GO:0010468;regulation of gene expression;0.00768623109991195!GO:0044437;vacuolar part;0.00768623109991195!GO:0016584;nucleosome positioning;0.00772833925631554!GO:0043022;ribosome binding;0.00776640872943841!GO:0003746;translation elongation factor activity;0.00803753672136154!GO:0051348;negative regulation of transferase activity;0.00839646700344388!GO:0051540;metal cluster binding;0.00849879059749524!GO:0051536;iron-sulfur cluster binding;0.00849879059749524!GO:0043433;negative regulation of transcription factor activity;0.00862703658185483!GO:0032507;maintenance of cellular protein localization;0.0086608063286171!GO:0043621;protein self-association;0.00904454239604363!GO:0031625;ubiquitin protein ligase binding;0.00914000913506894!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00919950046106211!GO:0008408;3'-5' exonuclease activity;0.00928621581614993!GO:0046519;sphingoid metabolic process;0.00930819701837594!GO:0005765;lysosomal membrane;0.00930819701837594!GO:0006984;ER-nuclear signaling pathway;0.00930819701837594!GO:0016272;prefoldin complex;0.00932598090134217!GO:0016197;endosome transport;0.00957904064623747!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00964653525365587!GO:0019210;kinase inhibitor activity;0.00971516180013194!GO:0003711;transcription elongation regulator activity;0.00998131184436172!GO:0051059;NF-kappaB binding;0.010296588386979!GO:0004860;protein kinase inhibitor activity;0.0103170399991231!GO:0006778;porphyrin metabolic process;0.0103580403381016!GO:0033013;tetrapyrrole metabolic process;0.0103580403381016!GO:0048487;beta-tubulin binding;0.010437428286684!GO:0045859;regulation of protein kinase activity;0.0106180584230822!GO:0000922;spindle pole;0.0106484061827231!GO:0008629;induction of apoptosis by intracellular signals;0.0111807609244931!GO:0006284;base-excision repair;0.0120812188819195!GO:0004003;ATP-dependent DNA helicase activity;0.0122274191832735!GO:0003725;double-stranded RNA binding;0.0124727406993999!GO:0019783;small conjugating protein-specific protease activity;0.0124730821780824!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0124945495743946!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0126514353227081!GO:0009303;rRNA transcription;0.0129371631714364!GO:0009161;ribonucleoside monophosphate metabolic process;0.0131162547433084!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0131162547433084!GO:0045185;maintenance of protein localization;0.013142377378623!GO:0047485;protein N-terminus binding;0.013368229955339!GO:0050662;coenzyme binding;0.0135274868500448!GO:0042393;histone binding;0.0136932218405321!GO:0000118;histone deacetylase complex;0.0140219410473183!GO:0006487;protein amino acid N-linked glycosylation;0.0144097621650078!GO:0015923;mannosidase activity;0.0145739462032908!GO:0016301;kinase activity;0.0146294611553161!GO:0000910;cytokinesis;0.0147199714099382!GO:0000209;protein polyubiquitination;0.0148569197952846!GO:0006289;nucleotide-excision repair;0.0150004070906038!GO:0048522;positive regulation of cellular process;0.015001058533364!GO:0007017;microtubule-based process;0.0151913528148775!GO:0043130;ubiquitin binding;0.0151913528148775!GO:0032182;small conjugating protein binding;0.0151913528148775!GO:0008180;signalosome;0.0157921212654671!GO:0004843;ubiquitin-specific protease activity;0.0161313535468345!GO:0000781;chromosome, telomeric region;0.0162638927298415!GO:0004532;exoribonuclease activity;0.0164177156160821!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0164177156160821!GO:0001836;release of cytochrome c from mitochondria;0.0165666015411294!GO:0051651;maintenance of cellular localization;0.0167329103257445!GO:0030508;thiol-disulfide exchange intermediate activity;0.016881714248411!GO:0043596;nuclear replication fork;0.0169522278631238!GO:0006779;porphyrin biosynthetic process;0.0169754677112229!GO:0033014;tetrapyrrole biosynthetic process;0.0169754677112229!GO:0005669;transcription factor TFIID complex;0.0174761659676681!GO:0007040;lysosome organization and biogenesis;0.0177455355881831!GO:0031570;DNA integrity checkpoint;0.0184995998523131!GO:0006695;cholesterol biosynthetic process;0.0186115472790983!GO:0006730;one-carbon compound metabolic process;0.0188618067722432!GO:0006378;mRNA polyadenylation;0.0190814954387964!GO:0005874;microtubule;0.0190814954387964!GO:0004659;prenyltransferase activity;0.0190814954387964!GO:0005996;monosaccharide metabolic process;0.0194677023211012!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0195426085685408!GO:0010257;NADH dehydrogenase complex assembly;0.0195426085685408!GO:0033108;mitochondrial respiratory chain complex assembly;0.0195426085685408!GO:0007050;cell cycle arrest;0.0195426085685408!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0199641568903818!GO:0016311;dephosphorylation;0.0199766547369825!GO:0008536;Ran GTPase binding;0.0200113511642186!GO:0019318;hexose metabolic process;0.02029051601809!GO:0031301;integral to organelle membrane;0.0202966638331409!GO:0000152;nuclear ubiquitin ligase complex;0.0205440738927768!GO:0031123;RNA 3'-end processing;0.0205917020899197!GO:0005832;chaperonin-containing T-complex;0.0206435622841902!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0209446210458991!GO:0008320;protein transmembrane transporter activity;0.0209446210458991!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0216855914847215!GO:0007264;small GTPase mediated signal transduction;0.0217543130744702!GO:0005869;dynactin complex;0.0217680265202479!GO:0050178;phenylpyruvate tautomerase activity;0.0217763855048923!GO:0000339;RNA cap binding;0.0225811281577984!GO:0006516;glycoprotein catabolic process;0.0231898776946563!GO:0004221;ubiquitin thiolesterase activity;0.023207628480757!GO:0016790;thiolester hydrolase activity;0.0236386370319674!GO:0007041;lysosomal transport;0.0237994278512967!GO:0009889;regulation of biosynthetic process;0.023887033973185!GO:0006096;glycolysis;0.0240657275438841!GO:0022415;viral reproductive process;0.024180865355902!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0251374454417414!GO:0008287;protein serine/threonine phosphatase complex;0.0252155698304119!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0252623964949157!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0252623964949157!GO:0009126;purine nucleoside monophosphate metabolic process;0.0252623964949157!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0252623964949157!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0252623964949157!GO:0006338;chromatin remodeling;0.0253435496151945!GO:0044438;microbody part;0.0253435496151945!GO:0044439;peroxisomal part;0.0253435496151945!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0255015441201121!GO:0015036;disulfide oxidoreductase activity;0.025546921709606!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0257139851586113!GO:0006275;regulation of DNA replication;0.0257303494233851!GO:0022884;macromolecule transmembrane transporter activity;0.0260920330648496!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0260920330648496!GO:0006400;tRNA modification;0.0262871608884984!GO:0042168;heme metabolic process;0.0267406748645549!GO:0008538;proteasome activator activity;0.0273328117020781!GO:0006376;mRNA splice site selection;0.0275307178239082!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0275307178239082!GO:0006220;pyrimidine nucleotide metabolic process;0.0277576175431994!GO:0046979;TAP2 binding;0.0278251628304453!GO:0046977;TAP binding;0.0278251628304453!GO:0046978;TAP1 binding;0.0278251628304453!GO:0006596;polyamine biosynthetic process;0.0279568803704022!GO:0046982;protein heterodimerization activity;0.0283193782991935!GO:0032039;integrator complex;0.0283300465244987!GO:0022406;membrane docking;0.0294830735378647!GO:0048278;vesicle docking;0.0294830735378647!GO:0030118;clathrin coat;0.0299243774825883!GO:0004722;protein serine/threonine phosphatase activity;0.0299243774825883!GO:0004540;ribonuclease activity;0.0300400710550672!GO:0007030;Golgi organization and biogenesis;0.0302929861985532!GO:0006118;electron transport;0.0302929861985532!GO:0005975;carbohydrate metabolic process;0.0305453985214939!GO:0051336;regulation of hydrolase activity;0.0308850592898189!GO:0016788;hydrolase activity, acting on ester bonds;0.0309311854184976!GO:0040029;regulation of gene expression, epigenetic;0.031312487053676!GO:0000178;exosome (RNase complex);0.0316815606591905!GO:0051101;regulation of DNA binding;0.0318369319155502!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0319779844687787!GO:0035267;NuA4 histone acetyltransferase complex;0.0325492864451462!GO:0003923;GPI-anchor transamidase activity;0.0327955795814623!GO:0016255;attachment of GPI anchor to protein;0.0327955795814623!GO:0042765;GPI-anchor transamidase complex;0.0327955795814623!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0331817575732856!GO:0002483;antigen processing and presentation of endogenous peptide antigen;0.0331817575732856!GO:0019885;antigen processing and presentation of endogenous peptide antigen via MHC class I;0.0331817575732856!GO:0030149;sphingolipid catabolic process;0.0333589635985047!GO:0046112;nucleobase biosynthetic process;0.0334758163604303!GO:0031647;regulation of protein stability;0.0343025178368943!GO:0006354;RNA elongation;0.0345621930829901!GO:0008097;5S rRNA binding;0.0346023074759941!GO:0004177;aminopeptidase activity;0.0346172339776422!GO:0005652;nuclear lamina;0.0349921359981898!GO:0045069;regulation of viral genome replication;0.0354705161511184!GO:0030968;unfolded protein response;0.0354705161511184!GO:0005791;rough endoplasmic reticulum;0.0355675734192471!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0356854742304234!GO:0004721;phosphoprotein phosphatase activity;0.0357089272936554!GO:0042054;histone methyltransferase activity;0.0357089272936554!GO:0006643;membrane lipid metabolic process;0.0357089272936554!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0357089272936554!GO:0051656;establishment of organelle localization;0.0357089272936554!GO:0000228;nuclear chromosome;0.0357089272936554!GO:0005521;lamin binding;0.0357089272936554!GO:0033367;protein localization in mast cell secretory granule;0.0357089272936554!GO:0033365;protein localization in organelle;0.0357089272936554!GO:0033371;T cell secretory granule organization and biogenesis;0.0357089272936554!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.0357089272936554!GO:0033375;protease localization in T cell secretory granule;0.0357089272936554!GO:0042629;mast cell granule;0.0357089272936554!GO:0033377;maintenance of protein localization in T cell secretory granule;0.0357089272936554!GO:0033364;mast cell secretory granule organization and biogenesis;0.0357089272936554!GO:0033380;granzyme B localization in T cell secretory granule;0.0357089272936554!GO:0033379;maintenance of protease localization in T cell secretory granule;0.0357089272936554!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.0357089272936554!GO:0033368;protease localization in mast cell secretory granule;0.0357089272936554!GO:0033366;protein localization in secretory granule;0.0357089272936554!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.0357089272936554!GO:0033374;protein localization in T cell secretory granule;0.0357089272936554!GO:0006458;'de novo' protein folding;0.0357089272936554!GO:0051084;'de novo' posttranslational protein folding;0.0357089272936554!GO:0007033;vacuole organization and biogenesis;0.0362825911750638!GO:0006467;protein thiol-disulfide exchange;0.0363801180461548!GO:0003887;DNA-directed DNA polymerase activity;0.0363973559009643!GO:0030518;steroid hormone receptor signaling pathway;0.0365643655493295!GO:0008017;microtubule binding;0.0365643655493295!GO:0051287;NAD binding;0.0366814615018906!GO:0031903;microbody membrane;0.0368267145619826!GO:0005778;peroxisomal membrane;0.0368267145619826!GO:0065007;biological regulation;0.0369052377915912!GO:0017134;fibroblast growth factor binding;0.0371702991062917!GO:0004563;beta-N-acetylhexosaminidase activity;0.0371876665265758!GO:0000726;non-recombinational repair;0.0371876665265758!GO:0043281;regulation of caspase activity;0.0377469356976329!GO:0016407;acetyltransferase activity;0.0382185726950486!GO:0051235;maintenance of localization;0.0383058121080061!GO:0005784;translocon complex;0.0387181946283789!GO:0000738;DNA catabolic process, exonucleolytic;0.0390439867179658!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0392413851167787!GO:0030911;TPR domain binding;0.0397706022254812!GO:0009308;amine metabolic process;0.0401183876682089!GO:0012506;vesicle membrane;0.0406984649147208!GO:0005680;anaphase-promoting complex;0.0408069892380175!GO:0000725;recombinational repair;0.0415064869044391!GO:0000724;double-strand break repair via homologous recombination;0.0415064869044391!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0419097092168205!GO:0043189;H4/H2A histone acetyltransferase complex;0.0420490035448725!GO:0006783;heme biosynthetic process;0.0424547506647136!GO:0044275;cellular carbohydrate catabolic process;0.0424735317628269!GO:0006904;vesicle docking during exocytosis;0.0428003419090293!GO:0019904;protein domain specific binding;0.0428600620380888!GO:0006665;sphingolipid metabolic process;0.0428600620380888!GO:0000123;histone acetyltransferase complex;0.0430815377134734!GO:0006013;mannose metabolic process;0.0430815377134734!GO:0046128;purine ribonucleoside metabolic process;0.0430815377134734!GO:0042278;purine nucleoside metabolic process;0.0430815377134734!GO:0000030;mannosyltransferase activity;0.0431957705934282!GO:0007004;telomere maintenance via telomerase;0.0435873145494968!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0438858630377714!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0443365779307745!GO:0006807;nitrogen compound metabolic process;0.0444595529826039!GO:0019883;antigen processing and presentation of endogenous antigen;0.0446079228288184!GO:0031577;spindle checkpoint;0.0447758913663596!GO:0004559;alpha-mannosidase activity;0.0448814074416459!GO:0006892;post-Golgi vesicle-mediated transport;0.0448946596165408!GO:0046365;monosaccharide catabolic process;0.0451420887270906!GO:0016279;protein-lysine N-methyltransferase activity;0.0455358283249441!GO:0018024;histone-lysine N-methyltransferase activity;0.0455358283249441!GO:0016278;lysine N-methyltransferase activity;0.0455358283249441!GO:0000077;DNA damage checkpoint;0.0456933981413261!GO:0005047;signal recognition particle binding;0.0466319184272364!GO:0019511;peptidyl-proline hydroxylation;0.0466636832247692!GO:0018208;peptidyl-proline modification;0.0466636832247692!GO:0019471;4-hydroxyproline metabolic process;0.0466636832247692!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.0466636832247692!GO:0005092;GDP-dissociation inhibitor activity;0.0468581427708472!GO:0000819;sister chromatid segregation;0.0469642448691072!GO:0051053;negative regulation of DNA metabolic process;0.0473062252062329!GO:0030132;clathrin coat of coated pit;0.0478255525464442!GO:0045947;negative regulation of translational initiation;0.0478688921646791!GO:0006950;response to stress;0.0488222037434759!GO:0007265;Ras protein signal transduction;0.0491753260321836!GO:0000070;mitotic sister chromatid segregation;0.0492724502946457!GO:0003709;RNA polymerase III transcription factor activity;0.0493133110477144
|sample_id=10727
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=POU2F1..3:1.94087945873;AIRE:1.76029091116;TOPORS:1.11812828986;LMO2:1.03603216165;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.01936888845;MYB:1.0109278052;MYOD1:1.00303535579;PITX1..3:0.991150682828;POU5F1:0.977685903547;FOX{I1,J2}:0.971581331786;ZNF148:0.932107983991;NFY{A,B,C}:0.931003110333;AHR_ARNT_ARNT2:0.893188197413;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.877455334038;NKX6-1,2:0.862933230552;NR5A1,2:0.853329383848;E2F1..5:0.846692520098;VSX1,2:0.841152424811;HOX{A6,A7,B6,B7}:0.81362941719;BREu{core}:0.810303885818;PAX4:0.804376380388;PAX6:0.756371243795;ELF1,2,4:0.750958044239;GFI1:0.741434671214;YY1:0.725851223573;OCT4_SOX2{dimer}:0.721103502821;FOXP1:0.693800524663;FOXA2:0.675384343743;RUNX1..3:0.659623263234;HOX{A4,D4}:0.576782690146;NFKB1_REL_RELA:0.573738347655;RORA:0.572525405341;ATF6:0.539288327839;PAX8:0.521890816397;HOXA9_MEIS1:0.51093638957;ELK1,4_GABP{A,B1}:0.500306781912;NFIX:0.468395131906;CREB1:0.437824848245;IRF1,2:0.411958285567;NRF1:0.402339059916;ZNF143:0.393434622272;POU1F1:0.392656066082;bHLH_family:0.337239603488;ZEB1:0.332469926678;FOX{F1,F2,J1}:0.330151223459;GCM1,2:0.329813379066;DMAP1_NCOR{1,2}_SMARC:0.274533633835;GATA6:0.263309269747;PAX2:0.254094137309;SNAI1..3:0.249798376384;HES1:0.24356915923;FOXD3:0.220856987155;IKZF2:0.217142167398;ZBTB16:0.207461036119;SPI1:0.20652311388;FOXO1,3,4:0.206001257467;EVI1:0.2037127545;ATF5_CREB3:0.183138754727;FOXP3:0.173096107313;RFX2..5_RFXANK_RFXAP:0.168602182692;HNF4A_NR2F1,2:0.166219768605;TGIF1:0.163017088605;CRX:0.120287041964;FOXQ1:0.119823450533;MEF2{A,B,C,D}:0.107753184799;FOXN1:0.093350968708;AR:0.0885256109624;HIF1A:0.0861002129704;STAT5{A,B}:0.0282438412617;SOX5:0.0271213664073;ONECUT1,2:0.0229984656976;ETS1,2:0.0182222056371;PAX3,7:0.0100287040199;TP53:-0.00448113059414;SPIB:-0.00565975888206;CDX1,2,4:-0.0152312329509;HOX{A5,B5}:-0.0194809294153;IRF7:-0.037593556622;PBX1:-0.0498665096715;ZNF384:-0.0507943144386;NR6A1:-0.0523404746544;FOX{D1,D2}:-0.0674663164255;ZIC1..3:-0.181145230788;NFIL3:-0.194024574582;CEBPA,B_DDIT3:-0.197647055423;SOX{8,9,10}:-0.221050683759;POU3F1..4:-0.221174411011;PAX1,9:-0.252235876522;ATF4:-0.258208124127;FOSL2:-0.284562002436;HNF1A:-0.285278034252;LHX3,4:-0.303714598642;STAT2,4,6:-0.305964803046;MYFfamily:-0.333131027557;BPTF:-0.339802673247;MAFB:-0.356469841482;LEF1_TCF7_TCF7L1,2:-0.367428769162;UFEwm:-0.377100693879;NHLH1,2:-0.39261812707;SRF:-0.394696394662;NKX3-2:-0.407315424952;ARID5B:-0.407862644213;TLX2:-0.418001535784;TEF:-0.428435118813;NKX2-2,8:-0.43720000103;FOS_FOS{B,L1}_JUN{B,D}:-0.448554993697;CDC5L:-0.450561905603;NANOG{mouse}:-0.455138946048;HLF:-0.46617649163;TAL1_TCF{3,4,12}:-0.480317011886;EBF1:-0.482290822859;RFX1:-0.485385024974;ESR1:-0.49103690467;HMGA1,2:-0.503970244368;CUX2:-0.510267677178;ALX4:-0.530411003239;NFE2:-0.536727331294;ZFP161:-0.568149412358;SREBF1,2:-0.573336127749;PRRX1,2:-0.578518885242;SOX17:-0.58561845847;BACH2:-0.586789353344;DBP:-0.592775133317;REST:-0.597951292927;FOXL1:-0.601245346732;POU6F1:-0.608898995357;TFDP1:-0.624582173975;ALX1:-0.63187750302;TBP:-0.64238742235;ADNP_IRX_SIX_ZHX:-0.663972315976;GATA4:-0.670729977611;STAT1,3:-0.677961726944;JUN:-0.685687408833;HAND1,2:-0.69514913709;ESRRA:-0.70574345669;NFE2L2:-0.707796772232;EN1,2:-0.747224874724;SPZ1:-0.772987994305;ZNF423:-0.781850430661;XBP1:-0.78805914448;GTF2A1,2:-0.807685568006;RXRA_VDR{dimer}:-0.814779549593;T:-0.819127226446;HBP1_HMGB_SSRP1_UBTF:-0.839881247724;MYBL2:-0.848322593286;NANOG:-0.849794147386;SMAD1..7,9:-0.859166673185;NKX2-3_NKX2-5:-0.871906149125;RXR{A,B,G}:-0.87835870099;SP1:-0.881851908491;TFAP2B:-0.892311829478;IKZF1:-0.903967217593;TBX4,5:-0.917163048984;TFAP4:-0.923215133186;NKX3-1:-0.930525602393;NFE2L1:-0.933449995217;GZF1:-0.936904607769;FOXM1:-0.949475705697;HSF1,2:-0.967465121947;NKX2-1,4:-0.972024210413;PATZ1:-0.974241920285;ZBTB6:-0.988050718095;RREB1:-0.996251226352;GFI1B:-0.999476246997;EP300:-1.00008030732;ZNF238:-1.01935571755;NFATC1..3:-1.03460260684;PPARG:-1.03604918727;GTF2I:-1.04302755987;PDX1:-1.0612502411;TFAP2{A,C}:-1.06361890311;NR1H4:-1.07967554483;MED-1{core}:-1.09346889377;MZF1:-1.0970380773;HIC1:-1.13356192136;SOX2:-1.14240838165;XCPE1{core}:-1.14323126242;MAZ:-1.15754729202;PRDM1:-1.16511928999;MTF1:-1.17241388001;KLF4:-1.1939258306;TEAD1:-1.19893492658;ATF2:-1.24068564333;MTE{core}:-1.25384328874;RBPJ:-1.26247279264;HMX1:-1.34115692218;GLI1..3:-1.34935390795;PAX5:-1.38229470517;EGR1..3:-1.41243655362;TLX1..3_NFIC{dimer}:-1.4471779454;TFCP2:-1.63938643436;NR3C1:-1.90858019568
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10727-110A7;search_select_hide=table117:FF:10727-110A7
}}
}}

Latest revision as of 15:02, 3 June 2020

Name:lymphangiectasia cell line:DS-1
Species:Human (Homo sapiens)
Library ID:CNhs11852
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
ageNA
cell typeb cell
cell lineDS-1
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005770
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11852 CAGE DRX007924 DRR008796
Accession ID Hg19

Library idBAMCTSS
CNhs11852 DRZ000221 DRZ001606
Accession ID Hg38

Library idBAMCTSS
CNhs11852 DRZ011571 DRZ012956
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.13
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.303
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell1.15
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0304
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00528
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0382
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0783
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.126
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0876
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0783
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.383
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0333
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0783
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0262
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0256
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0783
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.341
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0307
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.253
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11852

Jaspar motifP-value
MA0002.20.102
MA0003.10.476
MA0004.10.13
MA0006.10.492
MA0007.10.566
MA0009.10.866
MA0014.10.417
MA0017.10.121
MA0018.20.945
MA0019.10.33
MA0024.10.00102
MA0025.10.164
MA0027.10.216
MA0028.12.69799e-4
MA0029.10.216
MA0030.10.252
MA0031.10.144
MA0035.20.046
MA0038.10.0424
MA0039.20.516
MA0040.10.237
MA0041.10.227
MA0042.10.46
MA0043.10.605
MA0046.10.416
MA0047.20.38
MA0048.10.814
MA0050.10.00429
MA0051.10.0117
MA0052.10.444
MA0055.10.126
MA0057.10.946
MA0058.10.109
MA0059.10.00229
MA0060.11.05614e-7
MA0061.10.00124
MA0062.22.29705e-5
MA0065.20.0203
MA0066.10.821
MA0067.10.421
MA0068.10.297
MA0069.10.799
MA0070.10.859
MA0071.10.17
MA0072.10.0182
MA0073.10.67
MA0074.10.484
MA0076.13.66054e-4
MA0077.10.613
MA0078.10.102
MA0079.20.708
MA0080.20.0836
MA0081.10.393
MA0083.10.744
MA0084.10.133
MA0087.10.232
MA0088.10.00587
MA0090.10.00119
MA0091.10.716
MA0092.10.169
MA0093.10.132
MA0099.20.00202
MA0100.10.219
MA0101.10.0139
MA0102.20.478
MA0103.10.0257
MA0104.20.00101
MA0105.11.12396e-5
MA0106.10.167
MA0107.10.0174
MA0108.20.00881
MA0111.10.137
MA0112.20.216
MA0113.10.655
MA0114.10.0385
MA0115.10.0694
MA0116.10.00221
MA0117.10.83
MA0119.10.894
MA0122.10.653
MA0124.10.546
MA0125.10.894
MA0131.10.609
MA0135.10.638
MA0136.10.0162
MA0137.20.191
MA0138.20.72
MA0139.10.706
MA0140.10.00505
MA0141.10.103
MA0142.10.102
MA0143.10.33
MA0144.10.303
MA0145.10.517
MA0146.10.0223
MA0147.12.97279e-4
MA0148.10.664
MA0149.10.0487
MA0150.10.771
MA0152.10.292
MA0153.10.0103
MA0154.10.481
MA0155.10.513
MA0156.10.0281
MA0157.19.27965e-4
MA0159.10.944
MA0160.10.0617
MA0162.10.85
MA0163.16.74866e-7
MA0164.10.601
MA0258.10.111
MA0259.10.0327



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11852

Novel motifP-value
10.0351
100.0143
1000.108
1010.405
1020.173
1030.193
1040.743
1050.536
1060.778
1070.225
1080.213
1090.0811
110.0841
1100.352
1110.0644
1120.622
1130.666
1140.527
1150.565
1160.277
1170.00589
1180.503
1190.304
120.719
1200.408
1210.853
1220.632
1230.00135
1240.0408
1250.241
1260.36
1270.693
1280.392
1290.389
130.138
1300.295
1310.51
1320.834
1330.383
1340.598
1350.815
1360.162
1370.778
1380.25
1390.478
140.921
1400.436
1410.0642
1420.708
1430.0548
1440.685
1450.283
1460.792
1470.167
1480.535
1490.833
150.298
1500.538
1510.982
1520.959
1530.903
1540.519
1550.0657
1560.151
1570.963
1580.915
1590.13
160.875
1600.104
1610.852
1620.731
1630.92
1640.575
1650.845
1660.778
1670.135
1680.971
1690.294
170.751
180.861
190.707
20.755
200.216
210.352
220.924
230.147
240.372
250.127
260.0918
270.845
280.398
290.0246
30.169
300.0829
310.923
320.162
330.844
340.752
350.239
360.0357
370.135
380.595
390.723
40.031
400.0871
410.843
420.207
430.199
440.0852
450.728
460.265
470.0435
480.0456
490.00417
50.715
500.902
510.642
520.273
530.0752
540.94
550.386
560.401
570.222
580.31
590.631
60.45
600.448
610.0669
620.383
630.485
640.265
650.767
661.03717e-5
670.374
680.0872
690.491
70.11
700.36
710.0544
720.282
730.371
740.772
759.9811e-4
760.401
770.572
780.239
790.47
80.322
800.428
810.232
820.578
830.554
840.311
850.732
860.126
870.0282
880.845
890.583
90.482
900.0398
910.0759
920.959
930.598
940.376
950.00775
960.342
970.0721
980.427
990.682



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11852


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)

UBERON: Anatomy
0000055 (vessel)
0004111 (anatomical conduit)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0001062 (anatomical entity)
0000480 (anatomical group)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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