FF:10758-110E2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005908 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007886;DRR008758;DRZ000183;DRZ001568;DRZ011533;DRZ012918 | ||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100453,FF:0100400,FF:0100460,FF:0101282 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100400,FF:0100453 | |fonse_cell_line=FF:0100400,FF:0100453 | ||
|fonse_cell_line_closure=FF:0100400,FF:0100453 | |fonse_cell_line_closure=FF:0100400,FF:0100453 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/fibrosarcoma%2520cell%2520line%253aHT-1080.CNhs11860.10758-110E2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10758-110E2 | |id=FF:10758-110E2 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0101282 | ||
|is_obsolete= | |||
|library_id=CNhs11860 | |||
|library_id_phase_based=2:CNhs11860 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10758 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10758 | |||
|name=fibrosarcoma cell line:HT-1080 | |name=fibrosarcoma cell line:HT-1080 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11860,LSID830,release010,COMPLETED | |profile_hcage=CNhs11860,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.052599005242673,0,0,0,0,-0.0107523058473677,0,-0.127796407954496,-0.03985325827379,0,0,0,0,0,0,0,0,0,0,0,0.0557764781504105,0,-0.0481249998630819,0,0,0.0814158542378505,0,0,0.0516078279709609,0,0,0.0936973406815167,0,0,0,0,0,0,0,0,0,0,0.149565724239018,0,0.00561133804702582,0.0081393674894917,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.105198010485346,0,0,0.0557764781504105,0.163615966562219,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.052599005242673,0,0,0,0,0,0.149249763424966,0,0,0,-0.0584468268118252,0.148811909375849,0,0.189818001971091,0,0.29209949161158,0.00716265924763929,0.0496326265488033,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0169533713077285,0,0,0,-0.107733283502519,-0.340600164355108,0,0,0.0557764781504105,0,0.0241695321613732,0.226653930460379 | |||
|repeat_enrich_byname=0,0,0,0,0.00716265924763929,0,0.29209949161158,0.348962101907681,0,0,0,0,0,0.189818001971091,0,0,0.01342945251926,0,-0.0748520022046696,-0.0383171320381262,0.0278882390752053,0,0.185553105263169,0,0.105198010485346,0,0,0,0,0,0,0,0.337052768570936,0,0.21019577621551,0.0278882390752053,0,0,0,-0.0073449775765642,-0.155906506659389,0,0.0253590471241597,-0.0683442610773682,0,0.0557764781504105,0,0,-0.0804226673632338,0,-0.0156814733083949,0.143933762136962,-0.0317935861317161,-0.287608735636785,0.00897181925803051,0,0,0,-0.310201995310351,0.41579076094438,0,0,-0.0938916126766685,0.166793347581484,0,0,-0.241478857312616,0,-0.170158828095,0.0441580092763678,0,0.277893762429238,0,0,0,0,0,0.0557764781504105,0,0,0,0,0,-0.0574934668214365,0.0219735052287116,0,0,0.0557764781504105,0.0232146567120338,-0.0740829450485847,0,0,-0.373286155956567,0.243115805548691,-0.0869285576954381,0.0836297631485506,0,0.490533517269497,-0.110776569609347,-0.12880078993206,-0.0663859245504849,-0.147401849371139,0.131479048021851,0,-0.025674120641564,-0.0550593735912849,0.132976651051414,0.068148396922797,0.0057786625906073,-0.46824511340118,-0.00500109875069166,0,0,0,-0.192174828876497,0,0,-0.115289549764186,0.0453605041947284,-0.0155450099675031,-0.197339371921935,0.0221300347871742,0.145564813654896,-0.0395325284566706,-0.19682812509177,0.014621885820608,0.269317350382382,0,0.105198010485346,-0.0263462417543487,-0.029938297893758,-0.182234957658949,0.0927016079874828,0.000863425985376645,-0.257323531350602,-0.0683442610773682,0,0.0052912894811995,0.0647068929335652,0,0,0.0933328209084515,0,0,0.0450827867928023,0,0,-0.0744824475929222,-0.278883815225342,-0.177079083405134,0,-0.0916400780410785,-0.0397344063287126,-0.0452090106176211,0,-0.135416892231964,0,-0.0714202219009134,0.0821913601163519,0,0.0564087148010868,0.182893441661394,-0.102025547580309,0.297623818751697,-0.0584468268118252,0.0428396926949132,0.0116379723931092,0.0752243434745377,0.120946577565423,0,-0.0323503543248772,0,0.199254829120673,-0.194397527015221,0,0.407837983966199,0,-0.0864219866451628,0,-0.184854827006273,0,-0.340043024713742,-0.350615749502149,0.0831173904759666,0.0767530443026021,0,0.132978436939633,-0.439168835866294,0,0.139375822107527,0.0205403254328585,0.105198010485346,0.0394509186364513,0.149249763424966,-0.0983234626343996,0.0660975693427268,0,-0.0933555344472425,0,0,-0.261498120727454,0.0859847298073092,0,-0.168069488636098,-0.234377749500808,-0.100061901725364,0.14463725436989,0.105198010485346,0,0.609408036873283,0,0,-0.183583984060253,0.0153432353240732,0.382156544432929,0.0681344260849422,0.052599005242673,-0.0560238042115825,0,0,0.012290236005915,0,0.0505151295510654,0,0,0.32383371587385,0.348544522533368,0,0,0.105198010485346,0.0174573114721869,0,0,0,0,0,0,0.02946344669003,0.228399883405705,0.167573434840205,0,0.297136995360912,0,0.105198010485346,0,0,0.149565724239018,0,0,0.260608327804824,0.435109622738411,0.00569119611417225,0.0265483085625981,0.0804872443178783,0,0,0,0.159101762159113,0.0234173683656552,0,-0.0760862283472212,0,0,0,0,-0.0861409897892114,0,0.105198010485346,0,0.113326965230189,-0.057730457053664,-0.135186241310028,0,0,0,-0.0503004711414114,0,0,0,0.0548596894856222,0.0185213344832786,0,0.0238966096261791,0.0615884259820569,0,0.0176751032778981,-0.0815818795468414,0,0.217737331837719,0.0126183846487797,0.703622460009447,0,0,-0.205570653639477,0,0,0.184759320040348,0,0.149565724239018,0.0754370676499505,0,0,0,0,0,0,0.184919704147583,0.052599005242673,0,0,0,0,0.105198010485346,0,0,0,0,0,-0.100255063272587,0.134429873801869,0.18800332414715,0,0,0,0,0,0,-0.0241060230789031,-0.0511148461102818,0.0491070023544968,0,0,0,0,0,0,0,0.23710184150292,0,0,0,0,0,0.163615966562219,0,0.0557764781504105,0,0.105198010485346,-0.0797065165475801,0,0,-0.127796407954496,0,0,0,0,0,0,0.0278882390752053,0.055007759100825,0,0,0,0,0,-0.0675426078850372,-0.589309089522843,0,0.0557764781504105,0,0,0,0,0,-0.0481793677457115,0,0,0,0,0.0356813505300412,0,0,0,0.615222239354278,0,-0.0107523058473677,0,0,0,0,0,0,0.0278882390752053,0.0557764781504105,0,0,0,0,0,0,0,0,0,0.0278882390752053,0,0,0,0.325603946387412,0,-0.0890284930531253,0,0,0,0.0538561265474245,0,0,0,0,0,0,0.0212585812141458,0.0359040104124592,0,0,0,0,0,0,0.0278882390752053,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160730383785849,0.0302138298252932,0,0,0,0,0.646016130891059,0,0,0.0516078279709609,0.0557764781504105,0,-0.0641445707253208,0,0,0,0,0.171125772773962,0,0.195631013887169,0.003264079357319,-0.00072077934015855,0,0,0,0.0868296318229397,0.105198010485346,0,0.0149562088356356,0.0557764781504105,0.282184714488779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105198010485346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0481249998630819,0,0,0,0,0,0,0,0,0,0,0,0,0.187412582356294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0557764781504105,0.052599005242673,0,0,0,0,0,0,-0.00612312420021125,0.189818001971091,0,0,0,0,0,0,0.189818001971091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0242419901182279,0,0,0,-0.0635205054180253,0,0,0,0,0.006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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 54: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.10E+04 | ||
|rna_weight_ug=44.3124 | |rna_weight_ug=44.3124 | ||
|sample_age=35 | |sample_age=35 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=ifo50354 | |sample_cell_catalog=ifo50354 | ||
|sample_cell_line=HT-1080 | |sample_cell_line=HT-1080 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.33657783214288e-249!GO:0043226;organelle;5.26606549277387e-207!GO:0043229;intracellular organelle;1.89788300871021e-206!GO:0043231;intracellular membrane-bound organelle;6.55291907103548e-204!GO:0043227;membrane-bound organelle;8.47294768781974e-204!GO:0005737;cytoplasm;1.32693525953615e-179!GO:0044422;organelle part;2.78019873745591e-160!GO:0044446;intracellular organelle part;1.00060193897981e-158!GO:0044444;cytoplasmic part;1.07263491873926e-125!GO:0032991;macromolecular complex;2.1215136032538e-117!GO:0030529;ribonucleoprotein complex;2.95659990377158e-100!GO:0044237;cellular metabolic process;1.57871968439933e-93!GO:0044238;primary metabolic process;5.92085573696354e-92!GO:0044428;nuclear part;9.9128766970283e-92!GO:0005634;nucleus;1.29177641020025e-91!GO:0043170;macromolecule metabolic process;4.49988720398588e-89!GO:0043233;organelle lumen;1.30372760080488e-88!GO:0031974;membrane-enclosed lumen;1.30372760080488e-88!GO:0003723;RNA binding;2.2012699565955e-84!GO:0005515;protein binding;1.80855569614671e-79!GO:0005739;mitochondrion;1.70160802015038e-68!GO:0043234;protein complex;1.80201375735169e-59!GO:0005840;ribosome;1.21833308365005e-58!GO:0006396;RNA processing;6.59501147304993e-58!GO:0006412;translation;3.96907025060236e-57!GO:0031981;nuclear lumen;1.22488168013942e-56!GO:0043283;biopolymer metabolic process;1.94384835655915e-54!GO:0016043;cellular component organization and biogenesis;1.11423899061574e-53!GO:0019538;protein metabolic process;3.58134986541342e-53!GO:0003735;structural constituent of ribosome;2.12629557028172e-51!GO:0031090;organelle membrane;3.01986896873842e-50!GO:0044260;cellular macromolecule metabolic process;5.60003171115023e-48!GO:0010467;gene expression;7.35606355855931e-48!GO:0044267;cellular protein metabolic process;8.41461670353788e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.34263145532485e-45!GO:0044429;mitochondrial part;1.81289363410598e-44!GO:0033279;ribosomal subunit;7.32905997201237e-44!GO:0033036;macromolecule localization;2.35906901951e-43!GO:0044249;cellular biosynthetic process;4.9180218496638e-43!GO:0015031;protein transport;8.91770371163104e-43!GO:0009059;macromolecule biosynthetic process;9.83283424696941e-43!GO:0009058;biosynthetic process;1.10697135902242e-42!GO:0031967;organelle envelope;1.65952206414616e-42!GO:0031975;envelope;2.36479229156286e-42!GO:0016071;mRNA metabolic process;6.13240421899039e-42!GO:0043228;non-membrane-bound organelle;4.1160839156737e-40!GO:0043232;intracellular non-membrane-bound organelle;4.1160839156737e-40!GO:0008380;RNA splicing;4.6570101970082e-40!GO:0008104;protein localization;1.03453347843599e-39!GO:0045184;establishment of protein localization;1.14806759682766e-39!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.36583959270142e-39!GO:0005829;cytosol;1.00781796261452e-38!GO:0046907;intracellular transport;1.72303488496058e-37!GO:0006397;mRNA processing;3.33672364227715e-37!GO:0006996;organelle organization and biogenesis;5.15997194395829e-37!GO:0006259;DNA metabolic process;4.96559032302365e-36!GO:0005654;nucleoplasm;8.50378630015639e-35!GO:0065003;macromolecular complex assembly;1.90114032944563e-33!GO:0006886;intracellular protein transport;1.48617273386976e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.58411375434686e-31!GO:0007049;cell cycle;4.97060285068494e-30!GO:0005681;spliceosome;1.52715305148456e-29!GO:0022607;cellular component assembly;2.541408430195e-29!GO:0000166;nucleotide binding;4.12920214110753e-29!GO:0003676;nucleic acid binding;5.21009826200068e-29!GO:0044451;nucleoplasm part;2.69542808124906e-28!GO:0005740;mitochondrial envelope;3.48461263380186e-28!GO:0031966;mitochondrial membrane;2.39256078953869e-26!GO:0019866;organelle inner membrane;3.1217228522258e-26!GO:0044445;cytosolic part;1.31733667347271e-25!GO:0051649;establishment of cellular localization;1.4354764508128e-24!GO:0006974;response to DNA damage stimulus;2.01125363067738e-24!GO:0051641;cellular localization;2.20605422119778e-24!GO:0016462;pyrophosphatase activity;2.75435334127528e-24!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.93822680509864e-24!GO:0016817;hydrolase activity, acting on acid anhydrides;6.77232388392296e-24!GO:0005743;mitochondrial inner membrane;6.77232388392296e-24!GO:0015935;small ribosomal subunit;8.6021786218119e-24!GO:0017111;nucleoside-triphosphatase activity;2.15757038754125e-23!GO:0022402;cell cycle process;3.10001028239653e-23!GO:0005730;nucleolus;4.47624164418432e-23!GO:0006119;oxidative phosphorylation;6.06133003713838e-23!GO:0012505;endomembrane system;5.03621000806315e-22!GO:0000278;mitotic cell cycle;1.52953303272518e-21!GO:0015934;large ribosomal subunit;2.80783726003492e-21!GO:0044455;mitochondrial membrane part;3.14703795706567e-21!GO:0022618;protein-RNA complex assembly;8.85037353776642e-21!GO:0016874;ligase activity;2.25284137498117e-20!GO:0006281;DNA repair;2.92585871341568e-20!GO:0016070;RNA metabolic process;3.23918955535962e-20!GO:0032553;ribonucleotide binding;3.23918955535962e-20!GO:0032555;purine ribonucleotide binding;3.23918955535962e-20!GO:0017076;purine nucleotide binding;3.82554794071772e-20!GO:0006457;protein folding;7.54583381424914e-20!GO:0006512;ubiquitin cycle;1.35980427101407e-19!GO:0031980;mitochondrial lumen;2.10425448329375e-19!GO:0005759;mitochondrial matrix;2.10425448329375e-19!GO:0042254;ribosome biogenesis and assembly;2.50055686145648e-19!GO:0008135;translation factor activity, nucleic acid binding;6.78697494755331e-19!GO:0005694;chromosome;8.00878445849474e-19!GO:0044265;cellular macromolecule catabolic process;1.39169478423854e-18!GO:0043285;biopolymer catabolic process;1.23680771838733e-17!GO:0006605;protein targeting;1.58264949098214e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.65016485676386e-17!GO:0006260;DNA replication;1.71699393264785e-17!GO:0008134;transcription factor binding;1.98444917482858e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.06455062157056e-17!GO:0019941;modification-dependent protein catabolic process;2.12781647234104e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.12781647234104e-17!GO:0005524;ATP binding;2.45970615027647e-17!GO:0005746;mitochondrial respiratory chain;2.587856843398e-17!GO:0005761;mitochondrial ribosome;2.6699037012863e-17!GO:0000313;organellar ribosome;2.6699037012863e-17!GO:0044257;cellular protein catabolic process;5.09878189655522e-17!GO:0000502;proteasome complex (sensu Eukaryota);5.69804981483914e-17!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.01679969595811e-17!GO:0009719;response to endogenous stimulus;6.26836111514844e-17!GO:0044427;chromosomal part;6.94477845476592e-17!GO:0043412;biopolymer modification;6.99671286550792e-17!GO:0032559;adenyl ribonucleotide binding;8.09974653893866e-17!GO:0030554;adenyl nucleotide binding;1.37711813137817e-16!GO:0009057;macromolecule catabolic process;1.57236513028965e-16!GO:0048770;pigment granule;1.58450006629421e-16!GO:0042470;melanosome;1.58450006629421e-16!GO:0005783;endoplasmic reticulum;1.79525549392517e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.97426822338156e-16!GO:0022403;cell cycle phase;3.45568469150661e-16!GO:0044432;endoplasmic reticulum part;7.43812692287617e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.20851499252934e-15!GO:0003954;NADH dehydrogenase activity;1.20851499252934e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.20851499252934e-15!GO:0051301;cell division;1.5539853644521e-15!GO:0000087;M phase of mitotic cell cycle;2.5938049475401e-15!GO:0051186;cofactor metabolic process;4.00726504921615e-15!GO:0007067;mitosis;4.50256045909928e-15!GO:0005635;nuclear envelope;4.90957027980512e-15!GO:0030163;protein catabolic process;6.06325499915746e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.93093467535851e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;7.66708966593818e-15!GO:0000375;RNA splicing, via transesterification reactions;7.66708966593818e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.66708966593818e-15!GO:0006464;protein modification process;8.6347157823213e-15!GO:0051276;chromosome organization and biogenesis;1.84554149860662e-14!GO:0031965;nuclear membrane;2.13940568522974e-14!GO:0044248;cellular catabolic process;2.21991042907608e-14!GO:0003743;translation initiation factor activity;2.36033479084834e-14!GO:0044453;nuclear membrane part;3.36000601048146e-14!GO:0051082;unfolded protein binding;3.41729934648459e-14!GO:0016604;nuclear body;4.44997175669393e-14!GO:0042775;organelle ATP synthesis coupled electron transport;5.66094533868776e-14!GO:0042773;ATP synthesis coupled electron transport;5.66094533868776e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.23254406794963e-13!GO:0045271;respiratory chain complex I;1.23254406794963e-13!GO:0005747;mitochondrial respiratory chain complex I;1.23254406794963e-13!GO:0016887;ATPase activity;1.68234674434234e-13!GO:0048193;Golgi vesicle transport;2.39089255299668e-13!GO:0042623;ATPase activity, coupled;3.5702913999772e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.80429028207637e-13!GO:0005794;Golgi apparatus;4.54906214544066e-13!GO:0006413;translational initiation;5.67568843370083e-13!GO:0006364;rRNA processing;7.84636014771899e-13!GO:0000074;regulation of progression through cell cycle;8.44350633138306e-13!GO:0000279;M phase;1.01194583788437e-12!GO:0051726;regulation of cell cycle;1.10161524154869e-12!GO:0006913;nucleocytoplasmic transport;1.23366981701696e-12!GO:0043687;post-translational protein modification;1.62341717198535e-12!GO:0016072;rRNA metabolic process;1.7134579910434e-12!GO:0006399;tRNA metabolic process;1.72266216983124e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.09623926257223e-12!GO:0051169;nuclear transport;2.98338409299448e-12!GO:0006732;coenzyme metabolic process;3.39950655112578e-12!GO:0003712;transcription cofactor activity;5.33854338211926e-12!GO:0012501;programmed cell death;5.7713685024521e-12!GO:0065002;intracellular protein transport across a membrane;8.02176958319137e-12!GO:0006915;apoptosis;1.06366372564242e-11!GO:0005643;nuclear pore;1.20894476129002e-11!GO:0004386;helicase activity;1.76209490046938e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.84982720373916e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;2.27699993740979e-11!GO:0008639;small protein conjugating enzyme activity;3.29642987327573e-11!GO:0016192;vesicle-mediated transport;4.33284719801582e-11!GO:0005789;endoplasmic reticulum membrane;5.1231802256467e-11!GO:0004842;ubiquitin-protein ligase activity;7.19581119039587e-11!GO:0006323;DNA packaging;7.30903115076743e-11!GO:0050657;nucleic acid transport;7.65137511915854e-11!GO:0051236;establishment of RNA localization;7.65137511915854e-11!GO:0050658;RNA transport;7.65137511915854e-11!GO:0006403;RNA localization;8.59658867108193e-11!GO:0006446;regulation of translational initiation;9.06596347705536e-11!GO:0006366;transcription from RNA polymerase II promoter;9.28043302578086e-11!GO:0005793;ER-Golgi intermediate compartment;9.45302690238559e-11!GO:0016607;nuclear speck;1.00282894137816e-10!GO:0017038;protein import;1.16993399159072e-10!GO:0008219;cell death;1.3162875066829e-10!GO:0016265;death;1.3162875066829e-10!GO:0009259;ribonucleotide metabolic process;1.46783781437225e-10!GO:0019787;small conjugating protein ligase activity;3.26467911481043e-10!GO:0009055;electron carrier activity;4.46761453712978e-10!GO:0008026;ATP-dependent helicase activity;4.5287843115995e-10!GO:0006163;purine nucleotide metabolic process;4.64797039402835e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.65472479850996e-10!GO:0006461;protein complex assembly;5.07983191078041e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.18989148654057e-09!GO:0008565;protein transporter activity;1.36775784652629e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.37268550091829e-09!GO:0004812;aminoacyl-tRNA ligase activity;1.37268550091829e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.37268550091829e-09!GO:0046930;pore complex;1.43262354873143e-09!GO:0006164;purine nucleotide biosynthetic process;2.28313121641503e-09!GO:0030532;small nuclear ribonucleoprotein complex;2.39775323897168e-09!GO:0009260;ribonucleotide biosynthetic process;2.41981491070791e-09!GO:0043038;amino acid activation;3.16427175389494e-09!GO:0006418;tRNA aminoacylation for protein translation;3.16427175389494e-09!GO:0043039;tRNA aminoacylation;3.16427175389494e-09!GO:0009150;purine ribonucleotide metabolic process;3.4083523648218e-09!GO:0051028;mRNA transport;4.39369300964023e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.42839765687767e-09!GO:0016779;nucleotidyltransferase activity;4.75545962905817e-09!GO:0043566;structure-specific DNA binding;4.95693369023433e-09!GO:0016881;acid-amino acid ligase activity;5.13737041155453e-09!GO:0051188;cofactor biosynthetic process;5.51768589015159e-09!GO:0005667;transcription factor complex;8.30072556189084e-09!GO:0007005;mitochondrion organization and biogenesis;8.54037721649693e-09!GO:0003697;single-stranded DNA binding;9.51620666318713e-09!GO:0000785;chromatin;1.21684454823775e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.33417611248599e-08!GO:0016740;transferase activity;1.34780211150492e-08!GO:0009152;purine ribonucleotide biosynthetic process;1.63162279378111e-08!GO:0015986;ATP synthesis coupled proton transport;2.32995425187784e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.32995425187784e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.57704731277739e-08!GO:0006261;DNA-dependent DNA replication;3.31914921068636e-08!GO:0009056;catabolic process;3.65297068239407e-08!GO:0048523;negative regulation of cellular process;3.95712039259094e-08!GO:0016568;chromatin modification;4.64068733159272e-08!GO:0032446;protein modification by small protein conjugation;6.45662386334248e-08!GO:0009060;aerobic respiration;8.20033000929863e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.2879208905351e-08!GO:0009199;ribonucleoside triphosphate metabolic process;8.65452938904263e-08!GO:0016567;protein ubiquitination;9.22748031555212e-08!GO:0065004;protein-DNA complex assembly;1.02170780359228e-07!GO:0009141;nucleoside triphosphate metabolic process;1.04258098731472e-07!GO:0003899;DNA-directed RNA polymerase activity;1.05575538920609e-07!GO:0005768;endosome;1.10320790397919e-07!GO:0051246;regulation of protein metabolic process;1.25242050153457e-07!GO:0050794;regulation of cellular process;1.60661947222115e-07!GO:0000245;spliceosome assembly;1.75365070774128e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.83973303493021e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.83973303493021e-07!GO:0019829;cation-transporting ATPase activity;2.03389948768093e-07!GO:0043623;cellular protein complex assembly;2.03389948768093e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.06914471794812e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.06914471794812e-07!GO:0046034;ATP metabolic process;2.2551136100867e-07!GO:0003924;GTPase activity;2.32292365502444e-07!GO:0006333;chromatin assembly or disassembly;2.39493458599348e-07!GO:0005788;endoplasmic reticulum lumen;2.440169365279e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.86857923811832e-07!GO:0045333;cellular respiration;2.91785417617309e-07!GO:0009108;coenzyme biosynthetic process;3.42191327383542e-07!GO:0006754;ATP biosynthetic process;4.02666105308553e-07!GO:0006753;nucleoside phosphate metabolic process;4.02666105308553e-07!GO:0044431;Golgi apparatus part;4.09922185007957e-07!GO:0043067;regulation of programmed cell death;4.18211826194267e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.47214531013318e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.47214531013318e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.38166421645049e-07!GO:0006752;group transfer coenzyme metabolic process;5.43346602756607e-07!GO:0042981;regulation of apoptosis;5.72942269832054e-07!GO:0051329;interphase of mitotic cell cycle;5.78940477856098e-07!GO:0000775;chromosome, pericentric region;6.02785571640538e-07!GO:0030120;vesicle coat;6.6502163935676e-07!GO:0030662;coated vesicle membrane;6.6502163935676e-07!GO:0015630;microtubule cytoskeleton;6.69668110191871e-07!GO:0006606;protein import into nucleus;6.94891604218618e-07!GO:0048519;negative regulation of biological process;7.60843254929226e-07!GO:0016787;hydrolase activity;8.26789481867453e-07!GO:0048475;coated membrane;9.66881085057874e-07!GO:0030117;membrane coat;9.66881085057874e-07!GO:0016563;transcription activator activity;9.72144218149768e-07!GO:0051170;nuclear import;1.01694530152318e-06!GO:0051325;interphase;1.09017616161572e-06!GO:0003714;transcription corepressor activity;1.09017616161572e-06!GO:0009117;nucleotide metabolic process;1.09017616161572e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.16113867659897e-06!GO:0045259;proton-transporting ATP synthase complex;1.18826852547007e-06!GO:0006099;tricarboxylic acid cycle;1.20163972000485e-06!GO:0046356;acetyl-CoA catabolic process;1.20163972000485e-06!GO:0005819;spindle;1.36371849341226e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.64497232180393e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.97123534496004e-06!GO:0006793;phosphorus metabolic process;2.63898539167857e-06!GO:0006796;phosphate metabolic process;2.63898539167857e-06!GO:0004298;threonine endopeptidase activity;2.68638777563996e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.28524946967616e-06!GO:0005657;replication fork;3.83564650069927e-06!GO:0000151;ubiquitin ligase complex;3.92165345826949e-06!GO:0006084;acetyl-CoA metabolic process;4.24886261074298e-06!GO:0005762;mitochondrial large ribosomal subunit;4.24886261074298e-06!GO:0000315;organellar large ribosomal subunit;4.24886261074298e-06!GO:0005525;GTP binding;4.35365212472546e-06!GO:0043069;negative regulation of programmed cell death;4.37763866755898e-06!GO:0009109;coenzyme catabolic process;4.85526072480866e-06!GO:0008094;DNA-dependent ATPase activity;5.59389869638952e-06!GO:0016564;transcription repressor activity;5.67638454429689e-06!GO:0045786;negative regulation of progression through cell cycle;6.05248712440622e-06!GO:0007051;spindle organization and biogenesis;6.63076521012421e-06!GO:0000314;organellar small ribosomal subunit;6.99139363695e-06!GO:0005763;mitochondrial small ribosomal subunit;6.99139363695e-06!GO:0006613;cotranslational protein targeting to membrane;7.67293350654009e-06!GO:0003724;RNA helicase activity;8.00217791287949e-06!GO:0051187;cofactor catabolic process;8.68060181183017e-06!GO:0031252;leading edge;9.98351502520262e-06!GO:0043066;negative regulation of apoptosis;1.17821451627041e-05!GO:0003713;transcription coactivator activity;1.22469544564846e-05!GO:0000075;cell cycle checkpoint;1.28545285158952e-05!GO:0000139;Golgi membrane;1.47116870155022e-05!GO:0044452;nucleolar part;1.53307676797623e-05!GO:0044440;endosomal part;1.64769627199434e-05!GO:0010008;endosome membrane;1.64769627199434e-05!GO:0005813;centrosome;2.36649122309827e-05!GO:0051427;hormone receptor binding;2.52367337923816e-05!GO:0016310;phosphorylation;2.92892166059286e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.12843397532139e-05!GO:0006916;anti-apoptosis;3.2283679382384e-05!GO:0051168;nuclear export;3.29164587991582e-05!GO:0016363;nuclear matrix;3.44454110038013e-05!GO:0006334;nucleosome assembly;3.6202435499449e-05!GO:0043021;ribonucleoprotein binding;3.77351094833794e-05!GO:0032561;guanyl ribonucleotide binding;3.91521945159932e-05!GO:0019001;guanyl nucleotide binding;3.91521945159932e-05!GO:0006414;translational elongation;3.96131689344777e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.00080644974245e-05!GO:0005770;late endosome;4.13867717219374e-05!GO:0005815;microtubule organizing center;4.42059535680237e-05!GO:0019899;enzyme binding;4.42910443864013e-05!GO:0006626;protein targeting to mitochondrion;4.61053927556602e-05!GO:0003690;double-stranded DNA binding;4.71900249995298e-05!GO:0019843;rRNA binding;4.77336891043076e-05!GO:0031324;negative regulation of cellular metabolic process;5.13871434795228e-05!GO:0030867;rough endoplasmic reticulum membrane;5.23196096379408e-05!GO:0035257;nuclear hormone receptor binding;5.41319560069183e-05!GO:0043681;protein import into mitochondrion;5.42336562783515e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.28900055576753e-05!GO:0050789;regulation of biological process;7.40659806796724e-05!GO:0031497;chromatin assembly;7.43996931275313e-05!GO:0045454;cell redox homeostasis;9.50837062527338e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.96707945258729e-05!GO:0008033;tRNA processing;0.000101543846688633!GO:0030880;RNA polymerase complex;0.000105507203779595!GO:0048522;positive regulation of cellular process;0.000106489148245117!GO:0005798;Golgi-associated vesicle;0.000111558757029411!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000116128783727609!GO:0008654;phospholipid biosynthetic process;0.000116386847334119!GO:0016853;isomerase activity;0.00011740971801269!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000117875993976486!GO:0007010;cytoskeleton organization and biogenesis;0.00014058588363176!GO:0048471;perinuclear region of cytoplasm;0.000145418634487086!GO:0006302;double-strand break repair;0.000157986572085381!GO:0008186;RNA-dependent ATPase activity;0.000170238569725878!GO:0006612;protein targeting to membrane;0.000175318480221882!GO:0003684;damaged DNA binding;0.000193003471078372!GO:0019867;outer membrane;0.000197046055934089!GO:0051052;regulation of DNA metabolic process;0.000229950457501502!GO:0030036;actin cytoskeleton organization and biogenesis;0.000233621125809934!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000234354486991909!GO:0000428;DNA-directed RNA polymerase complex;0.000234354486991909!GO:0005769;early endosome;0.000245063824442934!GO:0007006;mitochondrial membrane organization and biogenesis;0.000249710947912367!GO:0006839;mitochondrial transport;0.000257127325569575!GO:0000082;G1/S transition of mitotic cell cycle;0.000274992906475759!GO:0031968;organelle outer membrane;0.000275791847023171!GO:0019222;regulation of metabolic process;0.000279411661610091!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000281243404345265!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00029952463333338!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000312487238828675!GO:0004527;exonuclease activity;0.000315742893535147!GO:0016859;cis-trans isomerase activity;0.000319220007879252!GO:0003682;chromatin binding;0.000333451391880557!GO:0031988;membrane-bound vesicle;0.000361693049317058!GO:0000049;tRNA binding;0.000370611039065607!GO:0003729;mRNA binding;0.000410795999324343!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000412000644370075!GO:0004576;oligosaccharyl transferase activity;0.000422685410172286!GO:0005885;Arp2/3 protein complex;0.000423449431919971!GO:0016023;cytoplasmic membrane-bound vesicle;0.000436714752827883!GO:0046483;heterocycle metabolic process;0.000471282054246288!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000475243728475105!GO:0008250;oligosaccharyl transferase complex;0.000478036997291704!GO:0004004;ATP-dependent RNA helicase activity;0.000491416556358127!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00050977158719904!GO:0000059;protein import into nucleus, docking;0.000510547525847917!GO:0005048;signal sequence binding;0.000510547525847917!GO:0009165;nucleotide biosynthetic process;0.000527747126867779!GO:0046474;glycerophospholipid biosynthetic process;0.000537064954751654!GO:0001726;ruffle;0.000548777186173072!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000548879247380282!GO:0007088;regulation of mitosis;0.000612982327071836!GO:0046489;phosphoinositide biosynthetic process;0.000640343743474817!GO:0008361;regulation of cell size;0.000673870092637049!GO:0005905;coated pit;0.000673996011448134!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000685215496141405!GO:0033116;ER-Golgi intermediate compartment membrane;0.000685322710047265!GO:0000776;kinetochore;0.000685801494449771!GO:0009112;nucleobase metabolic process;0.000689984064279823!GO:0006383;transcription from RNA polymerase III promoter;0.000737815055390353!GO:0015980;energy derivation by oxidation of organic compounds;0.00073969674943197!GO:0005741;mitochondrial outer membrane;0.000902494410602622!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000912778604205312!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000912778604205312!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000912778604205312!GO:0008022;protein C-terminus binding;0.000938589860690505!GO:0051252;regulation of RNA metabolic process;0.000945156441941794!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00101587704902652!GO:0007093;mitotic cell cycle checkpoint;0.00110171876158511!GO:0016049;cell growth;0.00114632277137722!GO:0016741;transferase activity, transferring one-carbon groups;0.00115661842771819!GO:0006352;transcription initiation;0.00115661842771819!GO:0008168;methyltransferase activity;0.00115862760163803!GO:0009892;negative regulation of metabolic process;0.00115862760163803!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00119412234288775!GO:0015399;primary active transmembrane transporter activity;0.00119412234288775!GO:0016491;oxidoreductase activity;0.00122142770606813!GO:0018196;peptidyl-asparagine modification;0.00122994557616492!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00122994557616492!GO:0016481;negative regulation of transcription;0.00123791874973301!GO:0003746;translation elongation factor activity;0.00133660420776338!GO:0003678;DNA helicase activity;0.00134605030961042!GO:0006310;DNA recombination;0.00134614295265411!GO:0048500;signal recognition particle;0.0013790443552335!GO:0006497;protein amino acid lipidation;0.00138762071352592!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00143533768241542!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00145496714718354!GO:0042802;identical protein binding;0.00148418670121818!GO:0005684;U2-dependent spliceosome;0.00148418670121818!GO:0006091;generation of precursor metabolites and energy;0.00149544824135935!GO:0031072;heat shock protein binding;0.0015163385445658!GO:0007052;mitotic spindle organization and biogenesis;0.00153695962341804!GO:0032508;DNA duplex unwinding;0.0015678694264627!GO:0032392;DNA geometric change;0.0015678694264627!GO:0030029;actin filament-based process;0.00169192052101182!GO:0016251;general RNA polymerase II transcription factor activity;0.00179861738151972!GO:0008312;7S RNA binding;0.00194993082021563!GO:0051920;peroxiredoxin activity;0.00207907682650023!GO:0007243;protein kinase cascade;0.00212146166260754!GO:0005637;nuclear inner membrane;0.00216540393042795!GO:0006891;intra-Golgi vesicle-mediated transport;0.00219630318385254!GO:0004674;protein serine/threonine kinase activity;0.00220691319228863!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00221979543433813!GO:0030663;COPI coated vesicle membrane;0.00237847610733787!GO:0030126;COPI vesicle coat;0.00237847610733787!GO:0007059;chromosome segregation;0.00242036006662146!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00242036006662146!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00242036006662146!GO:0006401;RNA catabolic process;0.00243070375649945!GO:0043284;biopolymer biosynthetic process;0.00244093296344747!GO:0006268;DNA unwinding during replication;0.00268514009332956!GO:0045893;positive regulation of transcription, DNA-dependent;0.00282996251548048!GO:0016044;membrane organization and biogenesis;0.00289623708576809!GO:0000287;magnesium ion binding;0.00293433540431538!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00306314691711327!GO:0045047;protein targeting to ER;0.00306314691711327!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00309835854768541!GO:0035258;steroid hormone receptor binding;0.00309835854768541!GO:0006506;GPI anchor biosynthetic process;0.00311822863454593!GO:0051539;4 iron, 4 sulfur cluster binding;0.00312486640674102!GO:0030132;clathrin coat of coated pit;0.00335242808833562!GO:0001558;regulation of cell growth;0.00336210697755105!GO:0006402;mRNA catabolic process;0.00354561747292343!GO:0031982;vesicle;0.0035837849409975!GO:0006650;glycerophospholipid metabolic process;0.00363928064756905!GO:0030521;androgen receptor signaling pathway;0.0036831957220704!GO:0043022;ribosome binding;0.00378190834687584!GO:0046467;membrane lipid biosynthetic process;0.00378190834687584!GO:0004532;exoribonuclease activity;0.00378190834687584!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00378190834687584!GO:0051087;chaperone binding;0.00386060200000747!GO:0045941;positive regulation of transcription;0.00387159386607838!GO:0030176;integral to endoplasmic reticulum membrane;0.00398214241154398!GO:0008092;cytoskeletal protein binding;0.00398214241154398!GO:0006611;protein export from nucleus;0.00410026877036927!GO:0051540;metal cluster binding;0.00415849457938471!GO:0051536;iron-sulfur cluster binding;0.00415849457938471!GO:0006505;GPI anchor metabolic process;0.00419938517920749!GO:0006595;polyamine metabolic process;0.00425822428417031!GO:0030137;COPI-coated vesicle;0.0044099419301983!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00444136395358916!GO:0006144;purine base metabolic process;0.00451960299481079!GO:0006289;nucleotide-excision repair;0.00459101845658148!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0046142937487117!GO:0000339;RNA cap binding;0.00466687847873551!GO:0043596;nuclear replication fork;0.00467357200184523!GO:0031410;cytoplasmic vesicle;0.00486915495711209!GO:0042158;lipoprotein biosynthetic process;0.00487896604915483!GO:0003711;transcription elongation regulator activity;0.00487896604915483!GO:0006405;RNA export from nucleus;0.00487896604915483!GO:0006520;amino acid metabolic process;0.00495674825463225!GO:0009116;nucleoside metabolic process;0.00524383141042632!GO:0005791;rough endoplasmic reticulum;0.00532725927582082!GO:0030658;transport vesicle membrane;0.00548390808830426!GO:0030384;phosphoinositide metabolic process;0.00558320772793754!GO:0005758;mitochondrial intermembrane space;0.00566061913173392!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00576657487020987!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00599751691747552!GO:0008180;signalosome;0.00613176287327463!GO:0016272;prefoldin complex;0.00615724443390053!GO:0005874;microtubule;0.00617760541765647!GO:0031970;organelle envelope lumen;0.0061781909058612!GO:0030118;clathrin coat;0.00621387224989874!GO:0031124;mRNA 3'-end processing;0.00647192996112952!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00649007878866761!GO:0008408;3'-5' exonuclease activity;0.00654434215742178!GO:0000178;exosome (RNase complex);0.00675850133605859!GO:0030145;manganese ion binding;0.00681831737380541!GO:0005773;vacuole;0.00685267183373646!GO:0006275;regulation of DNA replication;0.00725710123204638!GO:0042770;DNA damage response, signal transduction;0.00733283625162683!GO:0000228;nuclear chromosome;0.00740908709536434!GO:0051789;response to protein stimulus;0.00822094154542134!GO:0006986;response to unfolded protein;0.00822094154542134!GO:0044262;cellular carbohydrate metabolic process;0.00826485373553023!GO:0005832;chaperonin-containing T-complex;0.00853610653702654!GO:0015631;tubulin binding;0.00855226273779289!GO:0006376;mRNA splice site selection;0.0088246423730972!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0088246423730972!GO:0004518;nuclease activity;0.0088577142650019!GO:0048518;positive regulation of biological process;0.0088577142650019!GO:0031323;regulation of cellular metabolic process;0.00903649760761287!GO:0008139;nuclear localization sequence binding;0.00924828398775318!GO:0006284;base-excision repair;0.00947039075127398!GO:0006740;NADPH regeneration;0.00947720196007641!GO:0006098;pentose-phosphate shunt;0.00947720196007641!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00956553925093902!GO:0043492;ATPase activity, coupled to movement of substances;0.00974179604297291!GO:0000096;sulfur amino acid metabolic process;0.010139634594246!GO:0000209;protein polyubiquitination;0.0102604356213663!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0104353415610739!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0105251313048052!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0105408076086795!GO:0017166;vinculin binding;0.0106094410565758!GO:0050662;coenzyme binding;0.010640851087227!GO:0000792;heterochromatin;0.0106431631970606!GO:0005876;spindle microtubule;0.0106617442725535!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0107996174325282!GO:0015002;heme-copper terminal oxidase activity;0.0107996174325282!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0107996174325282!GO:0004129;cytochrome-c oxidase activity;0.0107996174325282!GO:0007050;cell cycle arrest;0.0109106751384733!GO:0006338;chromatin remodeling;0.0109540076016895!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0109572969005058!GO:0042393;histone binding;0.0110658824324714!GO:0006509;membrane protein ectodomain proteolysis;0.0113821355403539!GO:0033619;membrane protein proteolysis;0.0113821355403539!GO:0031529;ruffle organization and biogenesis;0.0114288834392224!GO:0043624;cellular protein complex disassembly;0.0115535607367728!GO:0000922;spindle pole;0.011850220097706!GO:0046983;protein dimerization activity;0.0119256363913002!GO:0000323;lytic vacuole;0.0121851282445115!GO:0005764;lysosome;0.0121851282445115!GO:0046822;regulation of nucleocytoplasmic transport;0.0123035404248615!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0129404802567521!GO:0030133;transport vesicle;0.0131294767848477!GO:0007017;microtubule-based process;0.0131441169090966!GO:0043488;regulation of mRNA stability;0.0135432018872946!GO:0043487;regulation of RNA stability;0.0135432018872946!GO:0007346;regulation of progression through mitotic cell cycle;0.013854526178631!GO:0044454;nuclear chromosome part;0.0138550122425749!GO:0030660;Golgi-associated vesicle membrane;0.0140112863925191!GO:0050681;androgen receptor binding;0.0141136788074157!GO:0030127;COPII vesicle coat;0.0144826066952522!GO:0012507;ER to Golgi transport vesicle membrane;0.0144826066952522!GO:0030134;ER to Golgi transport vesicle;0.0146083740911589!GO:0004003;ATP-dependent DNA helicase activity;0.014869793841216!GO:0031570;DNA integrity checkpoint;0.014869793841216!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0150186856970787!GO:0030518;steroid hormone receptor signaling pathway;0.0150291502863752!GO:0022890;inorganic cation transmembrane transporter activity;0.0152633854429854!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0152778922517551!GO:0006350;transcription;0.0153610982710817!GO:0030032;lamellipodium biogenesis;0.0153610982710817!GO:0004177;aminopeptidase activity;0.0155273298296619!GO:0048468;cell development;0.0156662661313822!GO:0043189;H4/H2A histone acetyltransferase complex;0.0157013757992142!GO:0006270;DNA replication initiation;0.015979796609964!GO:0035267;NuA4 histone acetyltransferase complex;0.0160530225520646!GO:0009451;RNA modification;0.0160694461770484!GO:0019752;carboxylic acid metabolic process;0.0161803444557204!GO:0051101;regulation of DNA binding;0.0166066662949325!GO:0006378;mRNA polyadenylation;0.0168263949589907!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0168263949589907!GO:0045039;protein import into mitochondrial inner membrane;0.0168263949589907!GO:0048487;beta-tubulin binding;0.0171227112364752!GO:0046112;nucleobase biosynthetic process;0.0171527597674169!GO:0005862;muscle thin filament tropomyosin;0.017258874011419!GO:0009124;nucleoside monophosphate biosynthetic process;0.0173317888987924!GO:0009123;nucleoside monophosphate metabolic process;0.0173317888987924!GO:0030119;AP-type membrane coat adaptor complex;0.0173918983126501!GO:0031902;late endosome membrane;0.0176954871419752!GO:0008629;induction of apoptosis by intracellular signals;0.0176977573551991!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0177642410620137!GO:0065009;regulation of a molecular function;0.0178969634283553!GO:0043601;nuclear replisome;0.0178969634283553!GO:0030894;replisome;0.0178969634283553!GO:0005669;transcription factor TFIID complex;0.0181065120358011!GO:0030027;lamellipodium;0.018537239006159!GO:0000175;3'-5'-exoribonuclease activity;0.0185479239300843!GO:0006082;organic acid metabolic process;0.0186944016747558!GO:0031901;early endosome membrane;0.0186944016747558!GO:0040008;regulation of growth;0.0189645311700965!GO:0005869;dynactin complex;0.0196837165940686!GO:0006458;'de novo' protein folding;0.0199056679511343!GO:0051084;'de novo' posttranslational protein folding;0.0199056679511343!GO:0006417;regulation of translation;0.0201621045882221!GO:0006818;hydrogen transport;0.0203468337883701!GO:0000786;nucleosome;0.0210992630154932!GO:0032984;macromolecular complex disassembly;0.021437431818992!GO:0016197;endosome transport;0.0214496356943274!GO:0008243;plasminogen activator activity;0.0215880750616639!GO:0032200;telomere organization and biogenesis;0.0218253053610138!GO:0000723;telomere maintenance;0.0218253053610138!GO:0030833;regulation of actin filament polymerization;0.0231154396711821!GO:0015992;proton transport;0.0231518590810097!GO:0045045;secretory pathway;0.02348676599072!GO:0031123;RNA 3'-end processing;0.02348676599072!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.02348676599072!GO:0016126;sterol biosynthetic process;0.0248187237876594!GO:0000725;recombinational repair;0.0251120658153957!GO:0000724;double-strand break repair via homologous recombination;0.0251120658153957!GO:0008538;proteasome activator activity;0.0252914826982681!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0253420037913545!GO:0032259;methylation;0.0255543152182874!GO:0008632;apoptotic program;0.0259017955905953!GO:0031371;ubiquitin conjugating enzyme complex;0.0261050776133586!GO:0030131;clathrin adaptor complex;0.0265730782370388!GO:0043065;positive regulation of apoptosis;0.0267997118739672!GO:0030125;clathrin vesicle coat;0.0272571095439073!GO:0030665;clathrin coated vesicle membrane;0.0272571095439073!GO:0006360;transcription from RNA polymerase I promoter;0.0272720932476968!GO:0030508;thiol-disulfide exchange intermediate activity;0.0273344824305141!GO:0022411;cellular component disassembly;0.0273969491573892!GO:0032906;transforming growth factor-beta2 production;0.0273969491573892!GO:0032909;regulation of transforming growth factor-beta2 production;0.0273969491573892!GO:0006695;cholesterol biosynthetic process;0.0279461926118821!GO:0007569;cell aging;0.0282816645881589!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0283559099642803!GO:0010257;NADH dehydrogenase complex assembly;0.0283559099642803!GO:0033108;mitochondrial respiratory chain complex assembly;0.0283559099642803!GO:0006007;glucose catabolic process;0.0284301440082079!GO:0016311;dephosphorylation;0.0287976213632727!GO:0045892;negative regulation of transcription, DNA-dependent;0.0289595433276099!GO:0006779;porphyrin biosynthetic process;0.0289595433276099!GO:0033014;tetrapyrrole biosynthetic process;0.0289595433276099!GO:0006778;porphyrin metabolic process;0.0293252156078357!GO:0033013;tetrapyrrole metabolic process;0.0293252156078357!GO:0047485;protein N-terminus binding;0.0293252156078357!GO:0043241;protein complex disassembly;0.0294579693887072!GO:0043414;biopolymer methylation;0.0295375148244703!GO:0031625;ubiquitin protein ligase binding;0.0297243540557196!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0297243540557196!GO:0009161;ribonucleoside monophosphate metabolic process;0.0299549971848626!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0299549971848626!GO:0065007;biological regulation;0.0299933392818837!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0304493803885082!GO:0043068;positive regulation of programmed cell death;0.0306461564723312!GO:0004748;ribonucleoside-diphosphate reductase activity;0.030892923527381!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.030892923527381!GO:0051053;negative regulation of DNA metabolic process;0.0309094392437607!GO:0007034;vacuolar transport;0.0310359493630869!GO:0050178;phenylpyruvate tautomerase activity;0.031242505589143!GO:0030911;TPR domain binding;0.0313715973162471!GO:0048144;fibroblast proliferation;0.0316359231881541!GO:0048145;regulation of fibroblast proliferation;0.0316359231881541!GO:0006950;response to stress;0.0316605851611378!GO:0030041;actin filament polymerization;0.0316999754376658!GO:0009303;rRNA transcription;0.0321404694365934!GO:0005096;GTPase activator activity;0.0322064074985232!GO:0005663;DNA replication factor C complex;0.0322141729659902!GO:0048146;positive regulation of fibroblast proliferation;0.032498876742724!GO:0048037;cofactor binding;0.032745238346716!GO:0006607;NLS-bearing substrate import into nucleus;0.0327761443543072!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0336898008567817!GO:0003756;protein disulfide isomerase activity;0.0338271354026424!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0338271354026424!GO:0006892;post-Golgi vesicle-mediated transport;0.0340217439302882!GO:0009967;positive regulation of signal transduction;0.0340317504602319!GO:0006739;NADP metabolic process;0.0342768305257621!GO:0007040;lysosome organization and biogenesis;0.0343797298451321!GO:0003702;RNA polymerase II transcription factor activity;0.0343853196639564!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0349610922038997!GO:0008097;5S rRNA binding;0.0355049763666722!GO:0006730;one-carbon compound metabolic process;0.0357670132581644!GO:0007021;tubulin folding;0.0358426783387788!GO:0007162;negative regulation of cell adhesion;0.0359307387543974!GO:0018193;peptidyl-amino acid modification;0.0361337163315972!GO:0000118;histone deacetylase complex;0.0361489843511109!GO:0030659;cytoplasmic vesicle membrane;0.036986244887958!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0374036176082632!GO:0019783;small conjugating protein-specific protease activity;0.0374270599514863!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0374996969182075!GO:0000152;nuclear ubiquitin ligase complex;0.0377621025258535!GO:0000123;histone acetyltransferase complex;0.0380427162884376!GO:0032040;small subunit processome;0.0386413411974999!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0392619577491386!GO:0003923;GPI-anchor transamidase activity;0.0396389174487981!GO:0016255;attachment of GPI anchor to protein;0.0396389174487981!GO:0042765;GPI-anchor transamidase complex;0.0396389174487981!GO:0005784;translocon complex;0.0396963574567734!GO:0030031;cell projection biogenesis;0.0406111874148042!GO:0006213;pyrimidine nucleoside metabolic process;0.0409211313872565!GO:0000077;DNA damage checkpoint;0.0410353792728308!GO:0006354;RNA elongation;0.0421019477735263!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0421742539285267!GO:0008047;enzyme activator activity;0.042269227575857!GO:0008637;apoptotic mitochondrial changes;0.0431043531372183!GO:0051085;chaperone cofactor-dependent protein folding;0.0433581342696669!GO:0007264;small GTPase mediated signal transduction;0.0441833902969649!GO:0016408;C-acyltransferase activity;0.0444733704147207!GO:0004239;methionyl aminopeptidase activity;0.0445776725504737!GO:0051287;NAD binding;0.0445776725504737!GO:0004843;ubiquitin-specific protease activity;0.0449112910826103!GO:0031326;regulation of cellular biosynthetic process;0.0450125221753384!GO:0046982;protein heterodimerization activity;0.0453638374928923!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0454478627069356!GO:0016301;kinase activity;0.046566029160704!GO:0045792;negative regulation of cell size;0.046985662777142!GO:0000910;cytokinesis;0.0474074151411671!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0474074151411671!GO:0006400;tRNA modification;0.0476768742663365!GO:0046426;negative regulation of JAK-STAT cascade;0.0477015735685763!GO:0030522;intracellular receptor-mediated signaling pathway;0.0479388742589143!GO:0005801;cis-Golgi network;0.0479795963140637!GO:0009067;aspartate family amino acid biosynthetic process;0.0481193713656499!GO:0004523;ribonuclease H activity;0.0481955044142983!GO:0008287;protein serine/threonine phosphatase complex;0.0482624250214423!GO:0003887;DNA-directed DNA polymerase activity;0.0491658081354724!GO:0051098;regulation of binding;0.0495049574720718!GO:0004680;casein kinase activity;0.0495093671655062!GO:0006596;polyamine biosynthetic process;0.0496345502657502!GO:0009893;positive regulation of metabolic process;0.0497278903454784!GO:0022415;viral reproductive process;0.0498590555411798 | |||
|sample_id=10758 | |sample_id=10758 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=pelvis | |sample_tissue=pelvis | ||
|top_motifs=NKX3-1:1.89309627834;TFDP1:1.41392330972;ONECUT1,2:1.38782918422;ELK1,4_GABP{A,B1}:1.38502203263;PPARG:1.36293837478;HOXA9_MEIS1:1.34249890343;PITX1..3:1.25758767804;ADNP_IRX_SIX_ZHX:1.25727297222;FOXD3:1.23236386507;FOX{I1,J2}:1.01677171561;TEF:0.99127957233;ZBTB16:0.918324222395;POU1F1:0.906153899015;ELF1,2,4:0.888960053344;E2F1..5:0.861784775579;ZNF143:0.743892472368;EN1,2:0.734099204139;GATA4:0.703579230626;GFI1:0.622047351086;FOXP1:0.600735918532;PAX4:0.556469946298;RBPJ:0.53728133798;POU3F1..4:0.514608799538;ARID5B:0.512053209305;RXR{A,B,G}:0.498686429319;NFE2:0.495518291724;BACH2:0.494701601562;PRDM1:0.46353299965;bHLH_family:0.424862925758;TOPORS:0.421199583386;MYB:0.418725622826;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.4176366208;PAX8:0.413434320784;ZNF384:0.385834317535;AIRE:0.376051015903;NFE2L1:0.359461670118;TP53:0.358267220419;NR3C1:0.357617448494;FOS_FOS{B,L1}_JUN{B,D}:0.28973831165;EVI1:0.28378939581;CEBPA,B_DDIT3:0.28351518588;GFI1B:0.280056408786;OCT4_SOX2{dimer}:0.27153634552;TEAD1:0.271165102251;PAX3,7:0.269055875847;HOX{A4,D4}:0.266936159686;UFEwm:0.256489849426;BREu{core}:0.247936073179;HOX{A5,B5}:0.244159544417;POU2F1..3:0.240953423456;HIC1:0.237026285448;NKX2-1,4:0.200084510974;CDC5L:0.187136055302;PRRX1,2:0.1852483001;NR6A1:0.183108038113;FOXA2:0.179172104538;TFAP2B:0.17471198954;IKZF2:0.161821260803;VSX1,2:0.130855369069;FOSL2:0.130788575564;YY1:0.125583903868;PBX1:0.109474706915;T:0.101552054206;POU6F1:0.0862363846602;NKX3-2:0.0795884611144;NRF1:0.0778057255659;ZFP161:0.0598003126447;HMGA1,2:0.0468975116738;GCM1,2:0.0349826640297;ZBTB6:0.025507533005;CDX1,2,4:0.0199525791906;TFAP2{A,C}:0.019564887173;ALX4:0.00827918868555;STAT5{A,B}:0.00782594433377;NFIX:0.00699615455887;FOXM1:0.00309886643282;AHR_ARNT_ARNT2:-0.0114955509381;HBP1_HMGB_SSRP1_UBTF:-0.0261704345056;CRX:-0.0367224694902;NFE2L2:-0.0378634186312;TLX1..3_NFIC{dimer}:-0.0414808224761;HES1:-0.067691073432;MYBL2:-0.0773887826131;NFY{A,B,C}:-0.0799900078151;DMAP1_NCOR{1,2}_SMARC:-0.0835461797387;GTF2A1,2:-0.084392590119;PDX1:-0.0882542813568;KLF4:-0.106929114071;NKX6-1,2:-0.116094947919;CUX2:-0.129470226796;RUNX1..3:-0.138334410017;ZIC1..3:-0.14676388637;MED-1{core}:-0.158737835255;MTE{core}:-0.164260801745;MYOD1:-0.173170662728;SPI1:-0.182639916331;PAX5:-0.183935091193;SRF:-0.195602642224;MZF1:-0.195688299048;GTF2I:-0.197936782685;LEF1_TCF7_TCF7L1,2:-0.209897960688;HNF1A:-0.213777735932;SMAD1..7,9:-0.214364023967;HLF:-0.217715538731;IKZF1:-0.222042063714;NANOG:-0.231732152931;ESRRA:-0.232382991653;ETS1,2:-0.234758191645;NKX2-2,8:-0.24013618662;FOXO1,3,4:-0.249824598067;TBX4,5:-0.25267061478;NR5A1,2:-0.27485881409;RFX1:-0.276482019766;SPIB:-0.279782551119;FOXQ1:-0.281528570042;POU5F1:-0.295299130969;EGR1..3:-0.301932986586;REST:-0.310279417488;BPTF:-0.339064399557;MEF2{A,B,C,D}:-0.342150069794;PAX6:-0.352409640182;MYFfamily:-0.354762004774;NFKB1_REL_RELA:-0.355820452189;LHX3,4:-0.359763165035;IRF1,2:-0.364078018361;NFIL3:-0.390503696949;GZF1:-0.399705861567;XCPE1{core}:-0.405396079785;JUN:-0.41596515999;MAZ:-0.424483279585;HNF4A_NR2F1,2:-0.425685946206;XBP1:-0.437406516876;NHLH1,2:-0.443686061734;SOX2:-0.44511288432;FOX{F1,F2,J1}:-0.4472114206;GATA6:-0.447758767969;SNAI1..3:-0.457212583653;MTF1:-0.460218665811;SOX5:-0.460415205888;STAT2,4,6:-0.466225265603;SOX17:-0.47720631992;TAL1_TCF{3,4,12}:-0.483887822252;IRF7:-0.501992959573;TFAP4:-0.507984505537;HIF1A:-0.510232217163;PAX1,9:-0.511238946655;ATF5_CREB3:-0.524647756271;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.525646451179;ALX1:-0.528533306647;NFATC1..3:-0.54082283278;DBP:-0.549435078362;AR:-0.557041877531;ZEB1:-0.599128937235;PAX2:-0.621341601017;SOX{8,9,10}:-0.632224699444;ATF2:-0.639289506646;CREB1:-0.642082286779;ATF4:-0.644381310394;NR1H4:-0.666935042167;ZNF148:-0.671864717292;FOX{D1,D2}:-0.675925619359;PATZ1:-0.680838404334;TLX2:-0.683440108108;RREB1:-0.694386746781;SPZ1:-0.711846262561;ZNF238:-0.715457358286;LMO2:-0.742447079881;MAFB:-0.764107947195;HSF1,2:-0.811146191188;STAT1,3:-0.81148757203;FOXL1:-0.812618809124;FOXN1:-0.826614061803;NANOG{mouse}:-0.832563912623;NKX2-3_NKX2-5:-0.83578480045;RXRA_VDR{dimer}:-0.839497071233;FOXP3:-0.880870832234;EBF1:-0.894243394455;HOX{A6,A7,B6,B7}:-0.904449206953;ZNF423:-0.907271121197;TGIF1:-0.910279016372;EP300:-0.92708006317;SP1:-0.964212839355;SREBF1,2:-0.970106641128;TBP:-0.99568003738;HAND1,2:-1.01417731417;ATF6:-1.07004612305;HMX1:-1.16467694969;TFCP2:-1.2253511723;RFX2..5_RFXANK_RFXAP:-1.24320286911;RORA:-1.28602599888;GLI1..3:-1.37509557356;ESR1:-2.17856354522 | |top_motifs=NKX3-1:1.89309627834;TFDP1:1.41392330972;ONECUT1,2:1.38782918422;ELK1,4_GABP{A,B1}:1.38502203263;PPARG:1.36293837478;HOXA9_MEIS1:1.34249890343;PITX1..3:1.25758767804;ADNP_IRX_SIX_ZHX:1.25727297222;FOXD3:1.23236386507;FOX{I1,J2}:1.01677171561;TEF:0.99127957233;ZBTB16:0.918324222395;POU1F1:0.906153899015;ELF1,2,4:0.888960053344;E2F1..5:0.861784775579;ZNF143:0.743892472368;EN1,2:0.734099204139;GATA4:0.703579230626;GFI1:0.622047351086;FOXP1:0.600735918532;PAX4:0.556469946298;RBPJ:0.53728133798;POU3F1..4:0.514608799538;ARID5B:0.512053209305;RXR{A,B,G}:0.498686429319;NFE2:0.495518291724;BACH2:0.494701601562;PRDM1:0.46353299965;bHLH_family:0.424862925758;TOPORS:0.421199583386;MYB:0.418725622826;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.4176366208;PAX8:0.413434320784;ZNF384:0.385834317535;AIRE:0.376051015903;NFE2L1:0.359461670118;TP53:0.358267220419;NR3C1:0.357617448494;FOS_FOS{B,L1}_JUN{B,D}:0.28973831165;EVI1:0.28378939581;CEBPA,B_DDIT3:0.28351518588;GFI1B:0.280056408786;OCT4_SOX2{dimer}:0.27153634552;TEAD1:0.271165102251;PAX3,7:0.269055875847;HOX{A4,D4}:0.266936159686;UFEwm:0.256489849426;BREu{core}:0.247936073179;HOX{A5,B5}:0.244159544417;POU2F1..3:0.240953423456;HIC1:0.237026285448;NKX2-1,4:0.200084510974;CDC5L:0.187136055302;PRRX1,2:0.1852483001;NR6A1:0.183108038113;FOXA2:0.179172104538;TFAP2B:0.17471198954;IKZF2:0.161821260803;VSX1,2:0.130855369069;FOSL2:0.130788575564;YY1:0.125583903868;PBX1:0.109474706915;T:0.101552054206;POU6F1:0.0862363846602;NKX3-2:0.0795884611144;NRF1:0.0778057255659;ZFP161:0.0598003126447;HMGA1,2:0.0468975116738;GCM1,2:0.0349826640297;ZBTB6:0.025507533005;CDX1,2,4:0.0199525791906;TFAP2{A,C}:0.019564887173;ALX4:0.00827918868555;STAT5{A,B}:0.00782594433377;NFIX:0.00699615455887;FOXM1:0.00309886643282;AHR_ARNT_ARNT2:-0.0114955509381;HBP1_HMGB_SSRP1_UBTF:-0.0261704345056;CRX:-0.0367224694902;NFE2L2:-0.0378634186312;TLX1..3_NFIC{dimer}:-0.0414808224761;HES1:-0.067691073432;MYBL2:-0.0773887826131;NFY{A,B,C}:-0.0799900078151;DMAP1_NCOR{1,2}_SMARC:-0.0835461797387;GTF2A1,2:-0.084392590119;PDX1:-0.0882542813568;KLF4:-0.106929114071;NKX6-1,2:-0.116094947919;CUX2:-0.129470226796;RUNX1..3:-0.138334410017;ZIC1..3:-0.14676388637;MED-1{core}:-0.158737835255;MTE{core}:-0.164260801745;MYOD1:-0.173170662728;SPI1:-0.182639916331;PAX5:-0.183935091193;SRF:-0.195602642224;MZF1:-0.195688299048;GTF2I:-0.197936782685;LEF1_TCF7_TCF7L1,2:-0.209897960688;HNF1A:-0.213777735932;SMAD1..7,9:-0.214364023967;HLF:-0.217715538731;IKZF1:-0.222042063714;NANOG:-0.231732152931;ESRRA:-0.232382991653;ETS1,2:-0.234758191645;NKX2-2,8:-0.24013618662;FOXO1,3,4:-0.249824598067;TBX4,5:-0.25267061478;NR5A1,2:-0.27485881409;RFX1:-0.276482019766;SPIB:-0.279782551119;FOXQ1:-0.281528570042;POU5F1:-0.295299130969;EGR1..3:-0.301932986586;REST:-0.310279417488;BPTF:-0.339064399557;MEF2{A,B,C,D}:-0.342150069794;PAX6:-0.352409640182;MYFfamily:-0.354762004774;NFKB1_REL_RELA:-0.355820452189;LHX3,4:-0.359763165035;IRF1,2:-0.364078018361;NFIL3:-0.390503696949;GZF1:-0.399705861567;XCPE1{core}:-0.405396079785;JUN:-0.41596515999;MAZ:-0.424483279585;HNF4A_NR2F1,2:-0.425685946206;XBP1:-0.437406516876;NHLH1,2:-0.443686061734;SOX2:-0.44511288432;FOX{F1,F2,J1}:-0.4472114206;GATA6:-0.447758767969;SNAI1..3:-0.457212583653;MTF1:-0.460218665811;SOX5:-0.460415205888;STAT2,4,6:-0.466225265603;SOX17:-0.47720631992;TAL1_TCF{3,4,12}:-0.483887822252;IRF7:-0.501992959573;TFAP4:-0.507984505537;HIF1A:-0.510232217163;PAX1,9:-0.511238946655;ATF5_CREB3:-0.524647756271;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.525646451179;ALX1:-0.528533306647;NFATC1..3:-0.54082283278;DBP:-0.549435078362;AR:-0.557041877531;ZEB1:-0.599128937235;PAX2:-0.621341601017;SOX{8,9,10}:-0.632224699444;ATF2:-0.639289506646;CREB1:-0.642082286779;ATF4:-0.644381310394;NR1H4:-0.666935042167;ZNF148:-0.671864717292;FOX{D1,D2}:-0.675925619359;PATZ1:-0.680838404334;TLX2:-0.683440108108;RREB1:-0.694386746781;SPZ1:-0.711846262561;ZNF238:-0.715457358286;LMO2:-0.742447079881;MAFB:-0.764107947195;HSF1,2:-0.811146191188;STAT1,3:-0.81148757203;FOXL1:-0.812618809124;FOXN1:-0.826614061803;NANOG{mouse}:-0.832563912623;NKX2-3_NKX2-5:-0.83578480045;RXRA_VDR{dimer}:-0.839497071233;FOXP3:-0.880870832234;EBF1:-0.894243394455;HOX{A6,A7,B6,B7}:-0.904449206953;ZNF423:-0.907271121197;TGIF1:-0.910279016372;EP300:-0.92708006317;SP1:-0.964212839355;SREBF1,2:-0.970106641128;TBP:-0.99568003738;HAND1,2:-1.01417731417;ATF6:-1.07004612305;HMX1:-1.16467694969;TFCP2:-1.2253511723;RFX2..5_RFXANK_RFXAP:-1.24320286911;RORA:-1.28602599888;GLI1..3:-1.37509557356;ESR1:-2.17856354522 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10758-110E2;search_select_hide=table117:FF:10758-110E2 | |||
}} | }} | ||
Latest revision as of 15:03, 3 June 2020
| Name: | fibrosarcoma cell line:HT-1080 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11860 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11860
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11860
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.118 |
| 10 | 10 | 0.358 |
| 100 | 100 | 0.783 |
| 101 | 101 | 0.463 |
| 102 | 102 | 0.294 |
| 103 | 103 | 0.498 |
| 104 | 104 | 0.675 |
| 105 | 105 | 0.254 |
| 106 | 106 | 0.41 |
| 107 | 107 | 0.11 |
| 108 | 108 | 0.155 |
| 109 | 109 | 0.334 |
| 11 | 11 | 0.293 |
| 110 | 110 | 0.344 |
| 111 | 111 | 0.0135 |
| 112 | 112 | 0.544 |
| 113 | 113 | 0.235 |
| 114 | 114 | 0.649 |
| 115 | 115 | 0.923 |
| 116 | 116 | 0.604 |
| 117 | 117 | 0.934 |
| 118 | 118 | 0.578 |
| 119 | 119 | 0.436 |
| 12 | 12 | 0.57 |
| 120 | 120 | 0.182 |
| 121 | 121 | 0.773 |
| 122 | 122 | 0.81 |
| 123 | 123 | 0.0128 |
| 124 | 124 | 0.735 |
| 125 | 125 | 0.184 |
| 126 | 126 | 1 |
| 127 | 127 | 0.104 |
| 128 | 128 | 0.612 |
| 129 | 129 | 0.69 |
| 13 | 13 | 0.901 |
| 130 | 130 | 0.384 |
| 131 | 131 | 0.149 |
| 132 | 132 | 0.748 |
| 133 | 133 | 0.359 |
| 134 | 134 | 0.717 |
| 135 | 135 | 0.111 |
| 136 | 136 | 0.0611 |
| 137 | 137 | 0.242 |
| 138 | 138 | 0.274 |
| 139 | 139 | 0.849 |
| 14 | 14 | 0.331 |
| 140 | 140 | 0.821 |
| 141 | 141 | 0.833 |
| 142 | 142 | 0.694 |
| 143 | 143 | 0.128 |
| 144 | 144 | 0.915 |
| 145 | 145 | 0.544 |
| 146 | 146 | 0.588 |
| 147 | 147 | 0.589 |
| 148 | 148 | 0.413 |
| 149 | 149 | 0.474 |
| 15 | 15 | 0.266 |
| 150 | 150 | 0.35 |
| 151 | 151 | 0.84 |
| 152 | 152 | 0.966 |
| 153 | 153 | 0.902 |
| 154 | 154 | 0.403 |
| 155 | 155 | 0.0967 |
| 156 | 156 | 0.663 |
| 157 | 157 | 0.795 |
| 158 | 158 | 0.154 |
| 159 | 159 | 0.0779 |
| 16 | 16 | 0.827 |
| 160 | 160 | 0.824 |
| 161 | 161 | 0.654 |
| 162 | 162 | 0.621 |
| 163 | 163 | 0.528 |
| 164 | 164 | 0.0125 |
| 165 | 165 | 0.98 |
| 166 | 166 | 0.754 |
| 167 | 167 | 0.0552 |
| 168 | 168 | 0.798 |
| 169 | 169 | 0.286 |
| 17 | 17 | 0.899 |
| 18 | 18 | 0.13 |
| 19 | 19 | 0.418 |
| 2 | 2 | 0.819 |
| 20 | 20 | 0.277 |
| 21 | 21 | 0.151 |
| 22 | 22 | 0.246 |
| 23 | 23 | 0.0907 |
| 24 | 24 | 0.688 |
| 25 | 25 | 0.435 |
| 26 | 26 | 0.5 |
| 27 | 27 | 0.288 |
| 28 | 28 | 0.302 |
| 29 | 29 | 0.113 |
| 3 | 3 | 0.307 |
| 30 | 30 | 0.125 |
| 31 | 31 | 0.975 |
| 32 | 32 | 0.0706 |
| 33 | 33 | 0.878 |
| 34 | 34 | 0.187 |
| 35 | 35 | 0.446 |
| 36 | 36 | 0.592 |
| 37 | 37 | 0.917 |
| 38 | 38 | 0.975 |
| 39 | 39 | 0.518 |
| 4 | 4 | 0.926 |
| 40 | 40 | 0.256 |
| 41 | 41 | 0.512 |
| 42 | 42 | 0.33 |
| 43 | 43 | 0.411 |
| 44 | 44 | 0.675 |
| 45 | 45 | 0.318 |
| 46 | 46 | 0.287 |
| 47 | 47 | 0.496 |
| 48 | 48 | 0.208 |
| 49 | 49 | 0.519 |
| 5 | 5 | 0.5 |
| 50 | 50 | 0.957 |
| 51 | 51 | 0.612 |
| 52 | 52 | 0.0216 |
| 53 | 53 | 0.575 |
| 54 | 54 | 0.808 |
| 55 | 55 | 0.706 |
| 56 | 56 | 0.941 |
| 57 | 57 | 0.0591 |
| 58 | 58 | 0.442 |
| 59 | 59 | 0.329 |
| 6 | 6 | 0.507 |
| 60 | 60 | 0.257 |
| 61 | 61 | 0.301 |
| 62 | 62 | 0.741 |
| 63 | 63 | 0.771 |
| 64 | 64 | 0.549 |
| 65 | 65 | 0.907 |
| 66 | 66 | 0.00107 |
| 67 | 67 | 0.357 |
| 68 | 68 | 0.15 |
| 69 | 69 | 0.474 |
| 7 | 7 | 0.526 |
| 70 | 70 | 0.551 |
| 71 | 71 | 0.626 |
| 72 | 72 | 0.364 |
| 73 | 73 | 0.556 |
| 74 | 74 | 0.634 |
| 75 | 75 | 0.748 |
| 76 | 76 | 0.903 |
| 77 | 77 | 0.987 |
| 78 | 78 | 0.633 |
| 79 | 79 | 0.464 |
| 8 | 8 | 0.115 |
| 80 | 80 | 0.0335 |
| 81 | 81 | 0.628 |
| 82 | 82 | 0.148 |
| 83 | 83 | 0.425 |
| 84 | 84 | 0.835 |
| 85 | 85 | 0.0183 |
| 86 | 86 | 0.711 |
| 87 | 87 | 0.2 |
| 88 | 88 | 0.139 |
| 89 | 89 | 0.386 |
| 9 | 9 | 0.144 |
| 90 | 90 | 0.362 |
| 91 | 91 | 0.174 |
| 92 | 92 | 0.635 |
| 93 | 93 | 0.525 |
| 94 | 94 | 0.514 |
| 95 | 95 | 0.233 |
| 96 | 96 | 0.898 |
| 97 | 97 | 0.523 |
| 98 | 98 | 0.897 |
| 99 | 99 | 0.072 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11860
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101282 HT-1080 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100453 (fibroblast cell line sample)
0100400 (sarcoma cell line sample)
0100460 (fibrosarcoma cell line sample)
0101282 (HT-1080 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
