FF:10790-110H7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005042 | |||
|accession_numbers=CAGE;DRX008019;DRR008891;DRZ000316;DRZ001701;DRZ011666;DRZ013051 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:3095,DOID:305,DOID:2994 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100306 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/teratocarcinoma%2520cell%2520line%253aNCC-IT-A3.CNhs11878.10790-110H7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10790-110H7 | |id=FF:10790-110H7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100306 | ||
|is_obsolete= | |||
|library_id=CNhs11878 | |||
|library_id_phase_based=2:CNhs11878 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10790 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10790 | |||
|name=teratocarcinoma cell line:NCC-IT-A3 | |name=teratocarcinoma cell line:NCC-IT-A3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11878,LSID830,release010,COMPLETED | |profile_hcage=CNhs11878,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0744813964729379,0,-0.117357705656166,0.153577457082916,0,0,0,0,0,0,0,0,0,0,0,0.0450355340939671,0,0.167374774435295,0,0,0,0,0,0.498657938818143,0,0,0.139841865900467,0,0,0,0,0,0,0,0,0,0,0,0,-0.0301817317084829,0.123131590149023,0,0,0,0,0,0,0,0.203779217277771,0,0,0,0,0,-0.00233500632757156,0.0450355340939671,0.0604832313073195,0,0,0.0257879629359258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0450355340939671,0.0450355340939671,0,0,0.138019092526935,-0.211197402695869,0,0,0,0,-0.0121987176242582,0.20274903354893,0,0,0,0,0,0,0,0,0,0,0.202092803731475,0,0,0,0,0,0,0.0400256339172039,0.157475592549925,0,0,-0.011795259271375,-0.0656811190533347,0,0,0.157475592549925,0.0429183168067241,0,0 | |||
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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=147.03525 | |rna_weight_ug=147.03525 | ||
|sample_age=24 | |sample_age=24 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb1005 | |sample_cell_catalog=jcrb1005 | ||
|sample_cell_line=NCC-IT-A3 | |sample_cell_line=NCC-IT-A3 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=J | |sample_ethnicity=J | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.80562312203369e-294!GO:0043226;organelle;2.50028369730795e-251!GO:0043229;intracellular organelle;7.46017490660452e-251!GO:0043231;intracellular membrane-bound organelle;1.89472980349739e-249!GO:0043227;membrane-bound organelle;3.26671420092928e-249!GO:0005737;cytoplasm;1.17380845927772e-172!GO:0044422;organelle part;6.91367745050602e-170!GO:0044446;intracellular organelle part;9.99083567576835e-169!GO:0005634;nucleus;1.11220937065329e-129!GO:0044237;cellular metabolic process;3.65671370134318e-118!GO:0044238;primary metabolic process;1.44339692896543e-116!GO:0044444;cytoplasmic part;4.67482855345602e-114!GO:0032991;macromolecular complex;4.8806377570815e-113!GO:0043170;macromolecule metabolic process;3.60819872941909e-111!GO:0030529;ribonucleoprotein complex;7.02991043958669e-104!GO:0044428;nuclear part;3.71388567674308e-96!GO:0003723;RNA binding;4.27442418907347e-94!GO:0043233;organelle lumen;6.57938982171459e-92!GO:0031974;membrane-enclosed lumen;6.57938982171459e-92!GO:0005739;mitochondrion;4.64688947653794e-77!GO:0043283;biopolymer metabolic process;1.49666704690924e-75!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.98459002459704e-72!GO:0006396;RNA processing;3.79497157338379e-70!GO:0010467;gene expression;6.69538890364004e-68!GO:0005515;protein binding;4.07374507461369e-64!GO:0031981;nuclear lumen;1.34724346802343e-58!GO:0016043;cellular component organization and biogenesis;2.69218412989711e-57!GO:0005840;ribosome;2.94720828927202e-56!GO:0043234;protein complex;3.61138888432757e-54!GO:0006412;translation;1.16771360078602e-53!GO:0044429;mitochondrial part;2.58658739186834e-53!GO:0003676;nucleic acid binding;2.21129562198631e-51!GO:0016071;mRNA metabolic process;1.9067627231643e-50!GO:0043228;non-membrane-bound organelle;6.78200893371774e-48!GO:0043232;intracellular non-membrane-bound organelle;6.78200893371774e-48!GO:0003735;structural constituent of ribosome;1.63142922833931e-47!GO:0008380;RNA splicing;2.0271915335588e-47!GO:0031967;organelle envelope;8.24578891724725e-47!GO:0031975;envelope;1.84888176652542e-46!GO:0033036;macromolecule localization;3.2165108640606e-46!GO:0006996;organelle organization and biogenesis;1.57523902772973e-45!GO:0015031;protein transport;3.74046403895132e-45!GO:0031090;organelle membrane;4.89186114099806e-45!GO:0006259;DNA metabolic process;1.62340158931183e-44!GO:0019538;protein metabolic process;2.72048347500626e-44!GO:0006397;mRNA processing;9.67466745420312e-43!GO:0044249;cellular biosynthetic process;2.34633680918269e-42!GO:0009058;biosynthetic process;3.22677291361155e-42!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.43517149793651e-42!GO:0033279;ribosomal subunit;9.72421053946789e-42!GO:0008104;protein localization;1.10467271647603e-40!GO:0045184;establishment of protein localization;2.75007702073677e-40!GO:0016070;RNA metabolic process;4.08289634398394e-39!GO:0044260;cellular macromolecule metabolic process;4.17387013389197e-39!GO:0065003;macromolecular complex assembly;4.44674243212049e-39!GO:0009059;macromolecule biosynthetic process;4.87593252844461e-39!GO:0044267;cellular protein metabolic process;5.4830260772435e-39!GO:0046907;intracellular transport;2.76097020816569e-37!GO:0005654;nucleoplasm;1.36390918216427e-34!GO:0022607;cellular component assembly;2.12855366695058e-34!GO:0005681;spliceosome;7.47775219996903e-34!GO:0000166;nucleotide binding;1.16155239831086e-32!GO:0007049;cell cycle;1.64400415309064e-32!GO:0005740;mitochondrial envelope;3.9418393549828e-32!GO:0019866;organelle inner membrane;8.23655453775022e-32!GO:0006886;intracellular protein transport;2.42843978425867e-30!GO:0031966;mitochondrial membrane;8.49299021701926e-30!GO:0005829;cytosol;1.96735258991876e-29!GO:0005743;mitochondrial inner membrane;3.20837873581654e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);5.09994709337812e-29!GO:0044451;nucleoplasm part;1.04176447620127e-27!GO:0006974;response to DNA damage stimulus;2.33669922948218e-27!GO:0005694;chromosome;1.2167763484916e-26!GO:0005730;nucleolus;2.0062141580164e-26!GO:0051649;establishment of cellular localization;1.44071444760672e-25!GO:0031980;mitochondrial lumen;2.35385265134083e-25!GO:0005759;mitochondrial matrix;2.35385265134083e-25!GO:0000278;mitotic cell cycle;3.79659169556599e-25!GO:0051641;cellular localization;1.03471255637083e-24!GO:0022402;cell cycle process;2.12614748654227e-24!GO:0006119;oxidative phosphorylation;5.48942760790623e-24!GO:0044427;chromosomal part;1.55830293335719e-23!GO:0006281;DNA repair;2.12141804681173e-23!GO:0016462;pyrophosphatase activity;3.52491255528062e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.13091622275354e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;5.51573840848139e-23!GO:0016874;ligase activity;6.64469484773406e-23!GO:0044455;mitochondrial membrane part;1.33254601023992e-22!GO:0017111;nucleoside-triphosphatase activity;2.64771521138684e-22!GO:0044445;cytosolic part;3.00326645628789e-22!GO:0032553;ribonucleotide binding;4.26098501006242e-22!GO:0032555;purine ribonucleotide binding;4.26098501006242e-22!GO:0051276;chromosome organization and biogenesis;7.38645910133346e-22!GO:0022618;protein-RNA complex assembly;7.80799793287989e-22!GO:0015935;small ribosomal subunit;1.66233976015474e-21!GO:0015934;large ribosomal subunit;2.35326243087196e-21!GO:0000087;M phase of mitotic cell cycle;5.75013011962534e-21!GO:0017076;purine nucleotide binding;6.7069382151279e-21!GO:0022403;cell cycle phase;9.75407499679319e-21!GO:0006512;ubiquitin cycle;1.28441896194985e-20!GO:0007067;mitosis;1.44937249748786e-20!GO:0042254;ribosome biogenesis and assembly;4.58842482706955e-20!GO:0044265;cellular macromolecule catabolic process;9.13152473415859e-20!GO:0051301;cell division;1.64472904574269e-19!GO:0006457;protein folding;2.9536599169849e-19!GO:0005524;ATP binding;3.62672089530083e-19!GO:0006260;DNA replication;6.13962865606717e-19!GO:0032559;adenyl ribonucleotide binding;1.37326759380329e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.3778020150309e-18!GO:0005746;mitochondrial respiratory chain;1.01483738239237e-17!GO:0000279;M phase;1.0554963105787e-17!GO:0008135;translation factor activity, nucleic acid binding;1.1835063300419e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.54336447482731e-17!GO:0005761;mitochondrial ribosome;1.65023361756262e-17!GO:0000313;organellar ribosome;1.65023361756262e-17!GO:0006511;ubiquitin-dependent protein catabolic process;2.1259145769692e-17!GO:0006325;establishment and/or maintenance of chromatin architecture;2.49061096787017e-17!GO:0019941;modification-dependent protein catabolic process;2.85850374920147e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.85850374920147e-17!GO:0030554;adenyl nucleotide binding;3.17534415549701e-17!GO:0044257;cellular protein catabolic process;5.05445400692718e-17!GO:0000398;nuclear mRNA splicing, via spliceosome;7.0939857711115e-17!GO:0000375;RNA splicing, via transesterification reactions;7.0939857711115e-17!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.0939857711115e-17!GO:0009719;response to endogenous stimulus;7.99441573962939e-17!GO:0044453;nuclear membrane part;8.34007829221228e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.0475379070913e-16!GO:0003954;NADH dehydrogenase activity;1.0475379070913e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.0475379070913e-16!GO:0006323;DNA packaging;1.08302038542513e-16!GO:0031965;nuclear membrane;2.02417417859938e-16!GO:0043285;biopolymer catabolic process;2.33264311672956e-16!GO:0012505;endomembrane system;3.06323411668689e-16!GO:0006605;protein targeting;4.44637848741011e-16!GO:0009057;macromolecule catabolic process;7.34598462326424e-16!GO:0006403;RNA localization;9.62942038730194e-16!GO:0006399;tRNA metabolic process;1.20486891609366e-15!GO:0044248;cellular catabolic process;1.49480299875829e-15!GO:0005643;nuclear pore;1.50531136423738e-15!GO:0050657;nucleic acid transport;2.10378842716488e-15!GO:0051236;establishment of RNA localization;2.10378842716488e-15!GO:0050658;RNA transport;2.10378842716488e-15!GO:0005635;nuclear envelope;2.68171717106331e-15!GO:0051186;cofactor metabolic process;2.96860206870046e-15!GO:0042775;organelle ATP synthesis coupled electron transport;3.20945969729976e-15!GO:0042773;ATP synthesis coupled electron transport;3.20945969729976e-15!GO:0004386;helicase activity;4.2140072922406e-15!GO:0008134;transcription factor binding;5.89184122546782e-15!GO:0030964;NADH dehydrogenase complex (quinone);9.29134741172787e-15!GO:0045271;respiratory chain complex I;9.29134741172787e-15!GO:0005747;mitochondrial respiratory chain complex I;9.29134741172787e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.33678810093448e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.50393874792854e-14!GO:0048770;pigment granule;2.26941619084677e-14!GO:0042470;melanosome;2.26941619084677e-14!GO:0016887;ATPase activity;2.39474118206367e-14!GO:0043412;biopolymer modification;2.67633871237468e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.70490314997498e-14!GO:0042623;ATPase activity, coupled;2.9759049079413e-14!GO:0006364;rRNA processing;3.85108087443967e-14!GO:0065002;intracellular protein transport across a membrane;5.04186990330742e-14!GO:0006413;translational initiation;7.507755717454e-14!GO:0016604;nuclear body;9.02051793771494e-14!GO:0016072;rRNA metabolic process;1.40333636610064e-13!GO:0051028;mRNA transport;1.60473548498564e-13!GO:0000502;proteasome complex (sensu Eukaryota);2.08532493342431e-13!GO:0003743;translation initiation factor activity;2.16407661563102e-13!GO:0030163;protein catabolic process;2.1886930491561e-13!GO:0051082;unfolded protein binding;2.23937842068222e-13!GO:0006913;nucleocytoplasmic transport;2.93839136837338e-13!GO:0065004;protein-DNA complex assembly;3.33472042682074e-13!GO:0000785;chromatin;3.43073582276319e-13!GO:0008026;ATP-dependent helicase activity;3.51324224040898e-13!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.61671591069545e-13!GO:0006732;coenzyme metabolic process;6.44180109551079e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.32422319026849e-13!GO:0051169;nuclear transport;9.79807360440278e-13!GO:0015630;microtubule cytoskeleton;1.35732024749931e-12!GO:0006446;regulation of translational initiation;1.53469959957534e-12!GO:0046930;pore complex;4.43689764364178e-12!GO:0008565;protein transporter activity;7.74363432801555e-12!GO:0006464;protein modification process;1.04859104991639e-11!GO:0016607;nuclear speck;1.06325947491885e-11!GO:0005794;Golgi apparatus;1.08286207480204e-11!GO:0048193;Golgi vesicle transport;1.22802798688924e-11!GO:0009259;ribonucleotide metabolic process;1.8450383772852e-11!GO:0006163;purine nucleotide metabolic process;2.52715424174331e-11!GO:0006333;chromatin assembly or disassembly;5.02088517620048e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.6922428208304e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.73873297285391e-11!GO:0004812;aminoacyl-tRNA ligase activity;5.73873297285391e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.73873297285391e-11!GO:0000074;regulation of progression through cell cycle;1.01057504522095e-10!GO:0051726;regulation of cell cycle;1.07738348502937e-10!GO:0006261;DNA-dependent DNA replication;1.33509679302632e-10!GO:0043687;post-translational protein modification;1.34064628831551e-10!GO:0006164;purine nucleotide biosynthetic process;1.7612307455403e-10!GO:0030532;small nuclear ribonucleoprotein complex;1.7630359365541e-10!GO:0043038;amino acid activation;2.14307675688839e-10!GO:0006418;tRNA aminoacylation for protein translation;2.14307675688839e-10!GO:0043039;tRNA aminoacylation;2.14307675688839e-10!GO:0009150;purine ribonucleotide metabolic process;2.6415242947821e-10!GO:0017038;protein import;2.72327417789615e-10!GO:0009260;ribonucleotide biosynthetic process;3.71888051612471e-10!GO:0006461;protein complex assembly;5.55190713797842e-10!GO:0000775;chromosome, pericentric region;5.65165629917896e-10!GO:0019222;regulation of metabolic process;6.79185380178898e-10!GO:0050794;regulation of cellular process;7.05929546171729e-10!GO:0016740;transferase activity;9.24744477367379e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.44033391711473e-10!GO:0008639;small protein conjugating enzyme activity;1.35264059434762e-09!GO:0043566;structure-specific DNA binding;1.56793164823857e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.80024375722146e-09!GO:0005783;endoplasmic reticulum;2.00397459144202e-09!GO:0009055;electron carrier activity;2.04660884362245e-09!GO:0016779;nucleotidyltransferase activity;2.08719452513558e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.15228658854845e-09!GO:0004842;ubiquitin-protein ligase activity;3.23465544300936e-09!GO:0019787;small conjugating protein ligase activity;3.34876521193213e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.36157248609331e-09!GO:0016568;chromatin modification;3.61621105703736e-09!GO:0003697;single-stranded DNA binding;4.05031238278471e-09!GO:0003712;transcription cofactor activity;6.00648285586174e-09!GO:0006366;transcription from RNA polymerase II promoter;6.11880833691551e-09!GO:0031497;chromatin assembly;9.71158523385559e-09!GO:0006334;nucleosome assembly;1.04677589058864e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.05821138761367e-08!GO:0009141;nucleoside triphosphate metabolic process;1.24725147960927e-08!GO:0008094;DNA-dependent ATPase activity;1.27809291014986e-08!GO:0016192;vesicle-mediated transport;1.41310983179062e-08!GO:0044432;endoplasmic reticulum part;1.50908894434818e-08!GO:0003899;DNA-directed RNA polymerase activity;1.92946095902259e-08!GO:0009142;nucleoside triphosphate biosynthetic process;2.0611003987929e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.0611003987929e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.61642151297149e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.61642151297149e-08!GO:0015986;ATP synthesis coupled proton transport;2.75224872743801e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.75224872743801e-08!GO:0051188;cofactor biosynthetic process;3.0859657232228e-08!GO:0009060;aerobic respiration;3.39565925116571e-08!GO:0043623;cellular protein complex assembly;4.34911926815278e-08!GO:0009056;catabolic process;4.68082907375602e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.34468205170256e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.34468205170256e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.34468205170256e-08!GO:0006350;transcription;5.58676044812595e-08!GO:0016881;acid-amino acid ligase activity;6.04548142953524e-08!GO:0005819;spindle;6.89254259882488e-08!GO:0045333;cellular respiration;9.30181242437536e-08!GO:0005657;replication fork;1.02948328349279e-07!GO:0031323;regulation of cellular metabolic process;1.0526442684896e-07!GO:0000245;spliceosome assembly;1.15817329240587e-07!GO:0007051;spindle organization and biogenesis;1.49010594724221e-07!GO:0007005;mitochondrion organization and biogenesis;1.63901355626699e-07!GO:0005793;ER-Golgi intermediate compartment;1.99008804530148e-07!GO:0003724;RNA helicase activity;2.01178831474208e-07!GO:0006752;group transfer coenzyme metabolic process;2.29739993541689e-07!GO:0046034;ATP metabolic process;2.5399082992042e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.74964974198642e-07!GO:0005813;centrosome;2.76730861007717e-07!GO:0009117;nucleotide metabolic process;4.32926962022018e-07!GO:0006754;ATP biosynthetic process;4.37668803228219e-07!GO:0006753;nucleoside phosphate metabolic process;4.37668803228219e-07!GO:0051329;interphase of mitotic cell cycle;5.38258173152817e-07!GO:0045259;proton-transporting ATP synthase complex;5.38957281639935e-07!GO:0006099;tricarboxylic acid cycle;5.83666639162522e-07!GO:0046356;acetyl-CoA catabolic process;5.83666639162522e-07!GO:0009108;coenzyme biosynthetic process;5.8686452161998e-07!GO:0006888;ER to Golgi vesicle-mediated transport;6.51394874756297e-07!GO:0051170;nuclear import;7.13115236389666e-07!GO:0006084;acetyl-CoA metabolic process;7.84482982028658e-07!GO:0019829;cation-transporting ATPase activity;9.46462515884538e-07!GO:0005815;microtubule organizing center;9.9753551473276e-07!GO:0048475;coated membrane;1.00228019846117e-06!GO:0030117;membrane coat;1.00228019846117e-06!GO:0010468;regulation of gene expression;1.01121856640735e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.01487923372305e-06!GO:0044452;nucleolar part;1.04522411523782e-06!GO:0008033;tRNA processing;1.10292950882196e-06!GO:0000075;cell cycle checkpoint;1.31860360305502e-06!GO:0032446;protein modification by small protein conjugation;1.46233029626514e-06!GO:0005667;transcription factor complex;1.48952620258864e-06!GO:0051325;interphase;1.63850979888528e-06!GO:0032774;RNA biosynthetic process;1.64993409842321e-06!GO:0051168;nuclear export;1.77106683189782e-06!GO:0006606;protein import into nucleus;1.9004093560524e-06!GO:0006351;transcription, DNA-dependent;2.23401659624211e-06!GO:0016853;isomerase activity;2.30157364929306e-06!GO:0016741;transferase activity, transferring one-carbon groups;2.505853617571e-06!GO:0005762;mitochondrial large ribosomal subunit;2.95483663194305e-06!GO:0000315;organellar large ribosomal subunit;2.95483663194305e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.1677549789479e-06!GO:0016567;protein ubiquitination;3.17953580841563e-06!GO:0050789;regulation of biological process;3.2554513939018e-06!GO:0008168;methyltransferase activity;3.31117653894464e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.39845030037854e-06!GO:0030120;vesicle coat;3.8462269079665e-06!GO:0030662;coated vesicle membrane;3.8462269079665e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.03895277001037e-06!GO:0009109;coenzyme catabolic process;4.23957184344638e-06!GO:0000151;ubiquitin ligase complex;4.48825322324108e-06!GO:0051246;regulation of protein metabolic process;4.65158111268818e-06!GO:0005789;endoplasmic reticulum membrane;5.02827432542029e-06!GO:0003690;double-stranded DNA binding;5.74561466555501e-06!GO:0005768;endosome;5.88757120543657e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;6.03455875953901e-06!GO:0012501;programmed cell death;7.35844673605163e-06!GO:0003924;GTPase activity;7.7522854153474e-06!GO:0008186;RNA-dependent ATPase activity;7.99323400571358e-06!GO:0006302;double-strand break repair;8.253881710438e-06!GO:0005874;microtubule;9.0949933670778e-06!GO:0000776;kinetochore;9.2639249736815e-06!GO:0006915;apoptosis;9.92988578459622e-06!GO:0006793;phosphorus metabolic process;1.0211666788074e-05!GO:0006796;phosphate metabolic process;1.0211666788074e-05!GO:0007010;cytoskeleton organization and biogenesis;1.11890920301716e-05!GO:0000314;organellar small ribosomal subunit;1.35106488334498e-05!GO:0005763;mitochondrial small ribosomal subunit;1.35106488334498e-05!GO:0005525;GTP binding;1.48406080488516e-05!GO:0051187;cofactor catabolic process;1.62417269326299e-05!GO:0003677;DNA binding;1.65576363696173e-05!GO:0006613;cotranslational protein targeting to membrane;1.7188500079385e-05!GO:0044431;Golgi apparatus part;1.93149136080384e-05!GO:0051427;hormone receptor binding;2.26915296876589e-05!GO:0000059;protein import into nucleus, docking;2.41356150414582e-05!GO:0004004;ATP-dependent RNA helicase activity;2.52904009292527e-05!GO:0016363;nuclear matrix;2.70278280525632e-05!GO:0008654;phospholipid biosynthetic process;2.76060938557746e-05!GO:0006383;transcription from RNA polymerase III promoter;2.94779419026054e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.53695552115644e-05!GO:0003678;DNA helicase activity;3.58149263515593e-05!GO:0007017;microtubule-based process;3.72073244783742e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.07671306936695e-05!GO:0031988;membrane-bound vesicle;4.23622191799814e-05!GO:0051052;regulation of DNA metabolic process;4.26853877133076e-05!GO:0003682;chromatin binding;4.46739302195224e-05!GO:0007059;chromosome segregation;4.62230965479191e-05!GO:0016310;phosphorylation;4.71072721244565e-05!GO:0016023;cytoplasmic membrane-bound vesicle;4.71913518034108e-05!GO:0003729;mRNA binding;5.05405327001998e-05!GO:0035257;nuclear hormone receptor binding;5.09102239440165e-05!GO:0031252;leading edge;5.23962716887487e-05!GO:0016859;cis-trans isomerase activity;5.61349445238235e-05!GO:0005798;Golgi-associated vesicle;6.19402133514794e-05!GO:0005770;late endosome;6.77982739823226e-05!GO:0030880;RNA polymerase complex;6.89214972278353e-05!GO:0045449;regulation of transcription;8.59850908025712e-05!GO:0006402;mRNA catabolic process;9.17037424002842e-05!GO:0016251;general RNA polymerase II transcription factor activity;9.17174916837716e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.72713060921846e-05!GO:0044440;endosomal part;9.80052640082748e-05!GO:0010008;endosome membrane;9.80052640082748e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;9.8357582376221e-05!GO:0006352;transcription initiation;0.000101846968570029!GO:0006401;RNA catabolic process;0.000104940406023255!GO:0032561;guanyl ribonucleotide binding;0.000113604391353681!GO:0019001;guanyl nucleotide binding;0.000113604391353681!GO:0003713;transcription coactivator activity;0.000113786348302397!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000114340236287314!GO:0043021;ribonucleoprotein binding;0.00011727076265668!GO:0008219;cell death;0.000117441043880518!GO:0016265;death;0.000117441043880518!GO:0006310;DNA recombination;0.000123274770105394!GO:0031982;vesicle;0.000127984346187076!GO:0006626;protein targeting to mitochondrion;0.000138569784264997!GO:0007093;mitotic cell cycle checkpoint;0.00013993615187471!GO:0000786;nucleosome;0.000142122788767658!GO:0043681;protein import into mitochondrion;0.000144431910398226!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000145597372693256!GO:0031410;cytoplasmic vesicle;0.000160914539377198!GO:0015980;energy derivation by oxidation of organic compounds;0.000164477892020049!GO:0032508;DNA duplex unwinding;0.000166770148274354!GO:0032392;DNA geometric change;0.000166770148274354!GO:0007088;regulation of mitosis;0.000168359988272494!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000169642653153601!GO:0000428;DNA-directed RNA polymerase complex;0.000169642653153601!GO:0006839;mitochondrial transport;0.00018225825241771!GO:0006612;protein targeting to membrane;0.000185535262328909!GO:0031324;negative regulation of cellular metabolic process;0.000207648679485705!GO:0006520;amino acid metabolic process;0.000214190152023436!GO:0009165;nucleotide biosynthetic process;0.000224299218907705!GO:0007052;mitotic spindle organization and biogenesis;0.000233143870825032!GO:0006355;regulation of transcription, DNA-dependent;0.000239496178891546!GO:0000049;tRNA binding;0.000250694284289292!GO:0005839;proteasome core complex (sensu Eukaryota);0.00025985455967384!GO:0015631;tubulin binding;0.000288933471754683!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000291925079430908!GO:0046474;glycerophospholipid biosynthetic process;0.000291993345125825!GO:0045454;cell redox homeostasis;0.000307072719675622!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000310312111743508!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000324014839871237!GO:0003684;damaged DNA binding;0.000332876303586276!GO:0016787;hydrolase activity;0.000337559614537217!GO:0005769;early endosome;0.000339624524304724!GO:0045786;negative regulation of progression through cell cycle;0.000368684742906295!GO:0007006;mitochondrial membrane organization and biogenesis;0.000383064458247004!GO:0030027;lamellipodium;0.000392280403533583!GO:0048523;negative regulation of cellular process;0.000398378277812618!GO:0005684;U2-dependent spliceosome;0.000398378277812618!GO:0051087;chaperone binding;0.000398860566093216!GO:0000139;Golgi membrane;0.000422832570963354!GO:0006405;RNA export from nucleus;0.000423607978837257!GO:0008652;amino acid biosynthetic process;0.000458597061380522!GO:0031072;heat shock protein binding;0.0004732032804465!GO:0030867;rough endoplasmic reticulum membrane;0.000493363273840786!GO:0016126;sterol biosynthetic process;0.000505775323549091!GO:0006268;DNA unwinding during replication;0.000531223276981391!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00055874448029657!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000583822562064369!GO:0009892;negative regulation of metabolic process;0.000694573753810434!GO:0004298;threonine endopeptidase activity;0.000746620375107826!GO:0006144;purine base metabolic process;0.000755853609144806!GO:0006338;chromatin remodeling;0.000787678050740955!GO:0051920;peroxiredoxin activity;0.000805816342046199!GO:0000725;recombinational repair;0.000810469052164349!GO:0000724;double-strand break repair via homologous recombination;0.000810469052164349!GO:0006414;translational elongation;0.000826571509701222!GO:0005885;Arp2/3 protein complex;0.000842843231468045!GO:0008250;oligosaccharyl transferase complex;0.000896806448364041!GO:0006275;regulation of DNA replication;0.000944225132863707!GO:0030521;androgen receptor signaling pathway;0.000958678117632381!GO:0005758;mitochondrial intermembrane space;0.00101140138823095!GO:0003714;transcription corepressor activity;0.00101140138823095!GO:0016564;transcription repressor activity;0.00101984544806841!GO:0009112;nucleobase metabolic process;0.00104353132304103!GO:0006541;glutamine metabolic process;0.00106567202706669!GO:0005637;nuclear inner membrane;0.00106856756900371!GO:0008270;zinc ion binding;0.00107233807389578!GO:0031970;organelle envelope lumen;0.00108460978526787!GO:0043069;negative regulation of programmed cell death;0.00111749561550059!GO:0004527;exonuclease activity;0.00112787173156769!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00112787173156769!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00112787173156769!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00112787173156769!GO:0016563;transcription activator activity;0.00115633589715237!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00121406264600719!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00121406264600719!GO:0046483;heterocycle metabolic process;0.0012725856229404!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00130606044029579!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00131670435729844!GO:0043066;negative regulation of apoptosis;0.0013190262034446!GO:0032259;methylation;0.00141497311168021!GO:0005788;endoplasmic reticulum lumen;0.00143990365044515!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00145646885398779!GO:0006611;protein export from nucleus;0.00146567093220534!GO:0005876;spindle microtubule;0.00153447768585444!GO:0046489;phosphoinositide biosynthetic process;0.00154575435979928!GO:0048471;perinuclear region of cytoplasm;0.00160365717877969!GO:0005048;signal sequence binding;0.00162241645589691!GO:0006916;anti-apoptosis;0.00166028134856203!GO:0040029;regulation of gene expression, epigenetic;0.00172635325743653!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00179819701604459!GO:0005741;mitochondrial outer membrane;0.00181493229930939!GO:0004576;oligosaccharyl transferase activity;0.00181580135375126!GO:0030118;clathrin coat;0.0018377524995722!GO:0019783;small conjugating protein-specific protease activity;0.00185703107893305!GO:0008092;cytoskeletal protein binding;0.00187435286206343!GO:0003711;transcription elongation regulator activity;0.00196334631200237!GO:0031968;organelle outer membrane;0.00202497793350307!GO:0048500;signal recognition particle;0.00208422788328063!GO:0019899;enzyme binding;0.00219254509262237!GO:0000792;heterochromatin;0.00222651636097982!GO:0004518;nuclease activity;0.00223501735687259!GO:0019867;outer membrane;0.00227806269843269!GO:0005669;transcription factor TFIID complex;0.00228045038454653!GO:0035258;steroid hormone receptor binding;0.00230015362985044!GO:0006695;cholesterol biosynthetic process;0.00239333775083389!GO:0006284;base-excision repair;0.00251399049909167!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00266206029436719!GO:0043596;nuclear replication fork;0.00266562182846923!GO:0000339;RNA cap binding;0.00273196818412652!GO:0043414;biopolymer methylation;0.00281686712496831!GO:0004003;ATP-dependent DNA helicase activity;0.00294933193308939!GO:0006595;polyamine metabolic process;0.0030153384357648!GO:0042981;regulation of apoptosis;0.00302749357254987!GO:0000096;sulfur amino acid metabolic process;0.00306081725363313!GO:0008312;7S RNA binding;0.00316638177636598!GO:0004843;ubiquitin-specific protease activity;0.00316867987505402!GO:0046467;membrane lipid biosynthetic process;0.00320223117382631!GO:0051539;4 iron, 4 sulfur cluster binding;0.00326648403286763!GO:0043067;regulation of programmed cell death;0.00326760489556374!GO:0051252;regulation of RNA metabolic process;0.00340250375734643!GO:0006730;one-carbon compound metabolic process;0.00348596615996851!GO:0009451;RNA modification;0.00375346340449434!GO:0048487;beta-tubulin binding;0.00386102603193576!GO:0008180;signalosome;0.0040133393522295!GO:0006270;DNA replication initiation;0.00402674569566823!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00402674569566823!GO:0016481;negative regulation of transcription;0.00403231324288973!GO:0000228;nuclear chromosome;0.00409818816852308!GO:0000152;nuclear ubiquitin ligase complex;0.00424059438655509!GO:0042393;histone binding;0.00429825664179461!GO:0045045;secretory pathway;0.00452636773673382!GO:0007264;small GTPase mediated signal transduction;0.0045414993841563!GO:0051053;negative regulation of DNA metabolic process;0.00455690743088871!GO:0006519;amino acid and derivative metabolic process;0.00494247912300619!GO:0004221;ubiquitin thiolesterase activity;0.00505691695739429!GO:0033116;ER-Golgi intermediate compartment membrane;0.00544800493580197!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00547115952964494!GO:0045047;protein targeting to ER;0.00547115952964494!GO:0006007;glucose catabolic process;0.00549367963618637!GO:0030658;transport vesicle membrane;0.00563747228190073!GO:0048519;negative regulation of biological process;0.00567707176276251!GO:0007021;tubulin folding;0.00570769904774001!GO:0032200;telomere organization and biogenesis;0.00586796266516329!GO:0000723;telomere maintenance;0.00586796266516329!GO:0009116;nucleoside metabolic process;0.00594850314485303!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.006020045597428!GO:0042158;lipoprotein biosynthetic process;0.00625120399740559!GO:0006650;glycerophospholipid metabolic process;0.00629452825034155!GO:0051540;metal cluster binding;0.0065464867301588!GO:0051536;iron-sulfur cluster binding;0.0065464867301588!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00665460452183616!GO:0016272;prefoldin complex;0.00669054222125441!GO:0000082;G1/S transition of mitotic cell cycle;0.00682852239992566!GO:0030119;AP-type membrane coat adaptor complex;0.00683960302057968!GO:0018196;peptidyl-asparagine modification;0.00683960302057968!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00683960302057968!GO:0005791;rough endoplasmic reticulum;0.0071321988827927!GO:0030663;COPI coated vesicle membrane;0.00724268548463489!GO:0030126;COPI vesicle coat;0.00724268548463489!GO:0003746;translation elongation factor activity;0.00731531492193928!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00746221244773173!GO:0009124;nucleoside monophosphate biosynthetic process;0.00751609799664413!GO:0009123;nucleoside monophosphate metabolic process;0.00751609799664413!GO:0031570;DNA integrity checkpoint;0.00751609799664413!GO:0006378;mRNA polyadenylation;0.00767838073889502!GO:0006497;protein amino acid lipidation;0.00788887752511745!GO:0005832;chaperonin-containing T-complex;0.0080743628243267!GO:0043624;cellular protein complex disassembly;0.00809364166585937!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00809658251423614!GO:0000922;spindle pole;0.00817207504262815!GO:0019752;carboxylic acid metabolic process;0.00835587472218897!GO:0043601;nuclear replisome;0.0084551153669028!GO:0030894;replisome;0.0084551153669028!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.00846104518719692!GO:0008022;protein C-terminus binding;0.00861077574563912!GO:0000097;sulfur amino acid biosynthetic process;0.00861077574563912!GO:0031124;mRNA 3'-end processing;0.00861077574563912!GO:0005875;microtubule associated complex;0.00861258551126305!GO:0005905;coated pit;0.00867140364581004!GO:0030384;phosphoinositide metabolic process;0.00885372819803133!GO:0019843;rRNA binding;0.00908475585004174!GO:0000819;sister chromatid segregation;0.00916502470728685!GO:0030131;clathrin adaptor complex;0.00921532178331595!GO:0006082;organic acid metabolic process;0.00946034738511939!GO:0000070;mitotic sister chromatid segregation;0.00947519519053255!GO:0008234;cysteine-type peptidase activity;0.00947519519053255!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00949813503137908!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00961655845962217!GO:0009303;rRNA transcription;0.00980385679374328!GO:0030518;steroid hormone receptor signaling pathway;0.00980385679374328!GO:0046914;transition metal ion binding;0.0100014330293696!GO:0030132;clathrin coat of coated pit;0.0100281786332238!GO:0006091;generation of precursor metabolites and energy;0.0100435606564995!GO:0000178;exosome (RNase complex);0.0104095714801536!GO:0030660;Golgi-associated vesicle membrane;0.0105827720324019!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0106056658105015!GO:0004674;protein serine/threonine kinase activity;0.0107530842986837!GO:0030134;ER to Golgi transport vesicle;0.011001158063616!GO:0065007;biological regulation;0.0113866933092096!GO:0006891;intra-Golgi vesicle-mediated transport;0.0114559215084649!GO:0008139;nuclear localization sequence binding;0.0114867423133074!GO:0051789;response to protein stimulus;0.0115218290833902!GO:0006986;response to unfolded protein;0.0115218290833902!GO:0030133;transport vesicle;0.0116671950948564!GO:0006376;mRNA splice site selection;0.011847575699088!GO:0000389;nuclear mRNA 3'-splice site recognition;0.011847575699088!GO:0015992;proton transport;0.0119905940262169!GO:0030036;actin cytoskeleton organization and biogenesis;0.0120783119431783!GO:0016584;nucleosome positioning;0.012156548955097!GO:0001726;ruffle;0.0123135797587831!GO:0006220;pyrimidine nucleotide metabolic process;0.012319040509469!GO:0045947;negative regulation of translational initiation;0.012352193782571!GO:0006818;hydrogen transport;0.0124274057828807!GO:0000118;histone deacetylase complex;0.0129977792762544!GO:0008097;5S rRNA binding;0.0130436965451618!GO:0006506;GPI anchor biosynthetic process;0.0133538132679579!GO:0044262;cellular carbohydrate metabolic process;0.0134088581845167!GO:0016790;thiolester hydrolase activity;0.0138398361195979!GO:0009161;ribonucleoside monophosphate metabolic process;0.013890452985156!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.013890452985156!GO:0005663;DNA replication factor C complex;0.0140756080139528!GO:0006301;postreplication repair;0.0143006240478475!GO:0016491;oxidoreductase activity;0.0143206845661164!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0145398893538084!GO:0015002;heme-copper terminal oxidase activity;0.0145398893538084!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0145398893538084!GO:0004129;cytochrome-c oxidase activity;0.0145398893538084!GO:0005732;small nucleolar ribonucleoprotein complex;0.0145849514145904!GO:0044450;microtubule organizing center part;0.0146383180406006!GO:0031577;spindle checkpoint;0.0146584946962676!GO:0044454;nuclear chromosome part;0.0148988551535712!GO:0043022;ribosome binding;0.0153858866663945!GO:0043488;regulation of mRNA stability;0.0156067802451919!GO:0043487;regulation of RNA stability;0.0156067802451919!GO:0042770;DNA damage response, signal transduction;0.0157575653851506!GO:0008610;lipid biosynthetic process;0.0161378509756901!GO:0006790;sulfur metabolic process;0.0162260898370124!GO:0005862;muscle thin filament tropomyosin;0.0165295856303656!GO:0008320;protein transmembrane transporter activity;0.0170785535478075!GO:0006892;post-Golgi vesicle-mediated transport;0.0173251467446057!GO:0006505;GPI anchor metabolic process;0.0173720732952049!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0176379754394323!GO:0006406;mRNA export from nucleus;0.0176593584523171!GO:0032984;macromolecular complex disassembly;0.0179103165210199!GO:0006417;regulation of translation;0.0181777385676296!GO:0030659;cytoplasmic vesicle membrane;0.0181777385676296!GO:0031123;RNA 3'-end processing;0.0184367885646753!GO:0022884;macromolecule transmembrane transporter activity;0.0184367885646753!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0184367885646753!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0185530539720376!GO:0006740;NADPH regeneration;0.0190816317798841!GO:0006098;pentose-phosphate shunt;0.0190816317798841!GO:0006400;tRNA modification;0.0200352284335115!GO:0050681;androgen receptor binding;0.0205683600636815!GO:0009081;branched chain family amino acid metabolic process;0.0206215175876572!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0206215175876572!GO:0045039;protein import into mitochondrial inner membrane;0.0206215175876572!GO:0009066;aspartate family amino acid metabolic process;0.0206235301159681!GO:0000790;nuclear chromatin;0.0206981046806723!GO:0031901;early endosome membrane;0.0211981425772704!GO:0004532;exoribonuclease activity;0.0213272560364283!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0213272560364283!GO:0035267;NuA4 histone acetyltransferase complex;0.0215203105507292!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0216989287686894!GO:0016407;acetyltransferase activity;0.021919946737374!GO:0008156;negative regulation of DNA replication;0.0219635181887698!GO:0000209;protein polyubiquitination;0.0219864696812612!GO:0050662;coenzyme binding;0.0223369131594642!GO:0008017;microtubule binding;0.0226126132717963!GO:0030137;COPI-coated vesicle;0.0227302497599337!GO:0043241;protein complex disassembly;0.0232953372839035!GO:0000910;cytokinesis;0.0234203169427647!GO:0008276;protein methyltransferase activity;0.0234911472911732!GO:0030176;integral to endoplasmic reticulum membrane;0.023702101117872!GO:0009064;glutamine family amino acid metabolic process;0.0238102470525879!GO:0004448;isocitrate dehydrogenase activity;0.0239235388288419!GO:0009113;purine base biosynthetic process;0.0242665809885203!GO:0006607;NLS-bearing substrate import into nucleus;0.0247747295133686!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0259291913750508!GO:0030127;COPII vesicle coat;0.0259291913750508!GO:0012507;ER to Golgi transport vesicle membrane;0.0259291913750508!GO:0016044;membrane organization and biogenesis;0.0265216907507617!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0265619248130609!GO:0015399;primary active transmembrane transporter activity;0.0265619248130609!GO:0000726;non-recombinational repair;0.0270692909093297!GO:0008287;protein serine/threonine phosphatase complex;0.0277255926408382!GO:0022890;inorganic cation transmembrane transporter activity;0.0277895837047403!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0284865508058184!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0284865508058184!GO:0009126;purine nucleoside monophosphate metabolic process;0.0284865508058184!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0284865508058184!GO:0032594;protein transport within lipid bilayer;0.0284865508058184!GO:0032907;transforming growth factor-beta3 production;0.0284865508058184!GO:0032596;protein transport into lipid raft;0.0284865508058184!GO:0032910;regulation of transforming growth factor-beta3 production;0.0284865508058184!GO:0032595;B cell receptor transport within lipid bilayer;0.0284865508058184!GO:0033606;chemokine receptor transport within lipid bilayer;0.0284865508058184!GO:0032600;chemokine receptor transport out of lipid raft;0.0284865508058184!GO:0032599;protein transport out of lipid raft;0.0284865508058184!GO:0032597;B cell receptor transport into lipid raft;0.0284865508058184!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0284865508058184!GO:0044433;cytoplasmic vesicle part;0.0285077619575219!GO:0000077;DNA damage checkpoint;0.028620943632938!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.028620943632938!GO:0005851;eukaryotic translation initiation factor 2B complex;0.0290368291706857!GO:0045892;negative regulation of transcription, DNA-dependent;0.0291106664415741!GO:0043284;biopolymer biosynthetic process;0.0293283072733407!GO:0030496;midbody;0.0293441958285245!GO:0030125;clathrin vesicle coat;0.0294695036180689!GO:0030665;clathrin coated vesicle membrane;0.0294695036180689!GO:0031369;translation initiation factor binding;0.0298072045814807!GO:0016585;chromatin remodeling complex;0.0302343722766172!GO:0003702;RNA polymerase II transcription factor activity;0.0304809482381891!GO:0005773;vacuole;0.0305040928396753!GO:0003756;protein disulfide isomerase activity;0.0310382791899322!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0310382791899322!GO:0005652;nuclear lamina;0.0310670778957708!GO:0031902;late endosome membrane;0.0318244997955758!GO:0005784;translocon complex;0.03188522966157!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0328815760001225!GO:0022411;cellular component disassembly;0.0329701286878814!GO:0005844;polysome;0.0331999533029733!GO:0007004;telomere maintenance via telomerase;0.0331999533029733!GO:0012506;vesicle membrane;0.0331999533029733!GO:0045815;positive regulation of gene expression, epigenetic;0.033325057392994!GO:0030145;manganese ion binding;0.0336377577218629!GO:0043631;RNA polyadenylation;0.0336645526887335!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0345014063960937!GO:0010257;NADH dehydrogenase complex assembly;0.0345014063960937!GO:0033108;mitochondrial respiratory chain complex assembly;0.0345014063960937!GO:0051287;NAD binding;0.0345336204458606!GO:0006289;nucleotide-excision repair;0.0345346582515587!GO:0050811;GABA receptor binding;0.0347207018534611!GO:0008629;induction of apoptosis by intracellular signals;0.0347510986622206!GO:0031371;ubiquitin conjugating enzyme complex;0.0347673017713612!GO:0046966;thyroid hormone receptor binding;0.034792965743789!GO:0008536;Ran GTPase binding;0.0348646780014944!GO:0005680;anaphase-promoting complex;0.0348646780014944!GO:0006596;polyamine biosynthetic process;0.0348994332621404!GO:0004523;ribonuclease H activity;0.0353537172234551!GO:0004659;prenyltransferase activity;0.035387524707804!GO:0046365;monosaccharide catabolic process;0.0359830853707568!GO:0000781;chromosome, telomeric region;0.0374107781800338!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.038187371932223!GO:0005938;cell cortex;0.0385226948074273!GO:0043433;negative regulation of transcription factor activity;0.0389361260866161!GO:0046112;nucleobase biosynthetic process;0.0392849744096258!GO:0009308;amine metabolic process;0.0397278419400628!GO:0042026;protein refolding;0.0397475868618397!GO:0008143;poly(A) binding;0.0397768337645996!GO:0004526;ribonuclease P activity;0.0397768337645996!GO:0042769;DNA damage response, detection of DNA damage;0.0397768337645996!GO:0043189;H4/H2A histone acetyltransferase complex;0.0398029865016675!GO:0030029;actin filament-based process;0.0399673627550036!GO:0030175;filopodium;0.0404562674951709!GO:0001522;pseudouridine synthesis;0.0406083450687863!GO:0006096;glycolysis;0.0406943171787038!GO:0033170;DNA-protein loading ATPase activity;0.0413175903241754!GO:0003689;DNA clamp loader activity;0.0413175903241754!GO:0008408;3'-5' exonuclease activity;0.0415870356709377!GO:0005666;DNA-directed RNA polymerase III complex;0.0415870356709377!GO:0043130;ubiquitin binding;0.0424629589065786!GO:0032182;small conjugating protein binding;0.0424629589065786!GO:0016018;cyclosporin A binding;0.0431814316944279!GO:0005869;dynactin complex;0.0446882306658558!GO:0003747;translation release factor activity;0.0455762380509549!GO:0008079;translation termination factor activity;0.0455762380509549!GO:0009067;aspartate family amino acid biosynthetic process;0.0456741037263001!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0464805174783456!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0467275611148171!GO:0051320;S phase;0.0473271175951386!GO:0005996;monosaccharide metabolic process;0.0475293095968032!GO:0042791;5S class rRNA transcription;0.0478197906399677!GO:0000127;transcription factor TFIIIC complex;0.0478197906399677!GO:0042797;tRNA transcription from RNA polymerase III promoter;0.0478197906399677!GO:0030522;intracellular receptor-mediated signaling pathway;0.0479312846051103!GO:0006415;translational termination;0.0480501785168832!GO:0042585;germinal vesicle;0.0480501785168832!GO:0030911;TPR domain binding;0.0483728548431128!GO:0006189;'de novo' IMP biosynthetic process;0.0483728548431128!GO:0006188;IMP biosynthetic process;0.0483728548431128!GO:0046040;IMP metabolic process;0.0483728548431128!GO:0006733;oxidoreduction coenzyme metabolic process;0.0491383014476653!GO:0000119;mediator complex;0.0494286148583059 | |||
|sample_id=10790 | |sample_id=10790 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=mediastinum | |sample_tissue=mediastinum | ||
|top_motifs=OCT4_SOX2{dimer}:2.99333611082;VSX1,2:2.5238250858;TOPORS:2.14328103778;GFI1:2.09320094424;ALX1:1.92769800526;SOX{8,9,10}:1.71864972627;E2F1..5:1.61661077017;NFY{A,B,C}:1.59000261184;POU2F1..3:1.48809492397;ZNF384:1.42617909446;ELK1,4_GABP{A,B1}:1.42060068984;RBPJ:1.39020037375;FOXM1:1.29892191703;PITX1..3:1.2807527424;TFDP1:1.21992071727;CDX1,2,4:1.21921706565;PBX1:1.21050105087;EVI1:1.13572665755;NRF1:1.10510042661;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.09690981743;PAX1,9:1.08017719377;SOX2:1.07110716173;ONECUT1,2:1.04469094877;FOXP1:1.01924982228;SOX17:1.01803294201;ZNF143:0.963631615018;STAT1,3:0.945775899973;IKZF2:0.923941921657;HOX{A4,D4}:0.884652815642;PAX8:0.878873321562;BREu{core}:0.856679509044;CUX2:0.832825892399;FOXQ1:0.823257058079;AIRE:0.807844594721;YY1:0.80504113555;CDC5L:0.729977320009;POU5F1:0.703395479282;LEF1_TCF7_TCF7L1,2:0.703075755045;FOXD3:0.693777626104;MYB:0.674236694521;KLF4:0.666966114182;PRRX1,2:0.644674433912;POU1F1:0.626163003704;T:0.586170423093;ZBTB16:0.562860517477;ZIC1..3:0.562709824954;PATZ1:0.561960620088;SP1:0.524080339509;FOX{I1,J2}:0.478776412999;GATA4:0.464859697312;ADNP_IRX_SIX_ZHX:0.437025988738;NANOG:0.436406481965;NKX2-3_NKX2-5:0.417421578191;POU6F1:0.35930328973;HIF1A:0.329628957191;NR5A1,2:0.301668654978;EN1,2:0.29623201897;FOXN1:0.284802687604;HSF1,2:0.268119422963;HOX{A5,B5}:0.266532893174;PAX2:0.261887434479;XCPE1{core}:0.25917126395;NKX6-1,2:0.248332653603;NKX2-1,4:0.219172215427;HOX{A6,A7,B6,B7}:0.209473724585;ARID5B:0.206657683929;ATF4:0.189531827273;STAT5{A,B}:0.172429946915;RORA:0.163488542441;TEF:0.157956043049;SNAI1..3:0.150212662192;CRX:0.133503769188;UFEwm:0.0929932543545;POU3F1..4:0.0624365352224;MZF1:0.0498737980522;GATA6:0.049315655038;FOXA2:0.0251078381063;ZFP161:0.0232571215077;IKZF1:0.0133127089162;HNF4A_NR2F1,2:0.00441302873405;HOXA9_MEIS1:-0.0606688622885;MYOD1:-0.0698506963512;MTF1:-0.0793751768355;ZEB1:-0.0958872820828;NFE2L2:-0.0967823274924;HAND1,2:-0.098293840317;NR1H4:-0.144386543366;HNF1A:-0.147108247606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.150827350735;NANOG{mouse}:-0.163302403921;ATF5_CREB3:-0.164731858637;LMO2:-0.16678784242;PAX3,7:-0.18985618715;ELF1,2,4:-0.190863349414;MAZ:-0.21320042344;FOXO1,3,4:-0.216396375074;PAX4:-0.218249819004;LHX3,4:-0.219992999308;MYFfamily:-0.256440596674;ZNF148:-0.266870640748;RFX1:-0.289705420646;bHLH_family:-0.296306725581;HIC1:-0.337023449425;SOX5:-0.3426565565;SREBF1,2:-0.349831739588;NKX3-1:-0.353263240835;ZBTB6:-0.354716015065;RXR{A,B,G}:-0.370624663212;ESRRA:-0.375981241378;DMAP1_NCOR{1,2}_SMARC:-0.384244757591;REST:-0.385151219321;PRDM1:-0.390414816217;MYBL2:-0.391858771783;GTF2I:-0.409929273275;AHR_ARNT_ARNT2:-0.436363556257;NFIX:-0.438165877364;FOXP3:-0.440863870943;CREB1:-0.441898368989;NHLH1,2:-0.45542886155;XBP1:-0.457228121031;TEAD1:-0.460238645199;JUN:-0.463174348851;TBX4,5:-0.465622560518;NFKB1_REL_RELA:-0.469455768735;RREB1:-0.484784250483;TFAP2B:-0.489362517136;TBP:-0.489895483767;AR:-0.491831461087;TGIF1:-0.492764818449;BPTF:-0.516251226721;MEF2{A,B,C,D}:-0.519500356528;GFI1B:-0.519674183527;GZF1:-0.532364127976;MTE{core}:-0.547485674926;EBF1:-0.547891259143;FOS_FOS{B,L1}_JUN{B,D}:-0.552906909267;PAX6:-0.567228506168;FOSL2:-0.571906983385;NKX2-2,8:-0.60853180253;ZNF423:-0.60861009349;PDX1:-0.612399053511;SPI1:-0.618517106896;RUNX1..3:-0.634434709856;BACH2:-0.645959929676;GCM1,2:-0.655268631797;TP53:-0.662177543394;DBP:-0.669492801051;RFX2..5_RFXANK_RFXAP:-0.676682357988;SPIB:-0.695323124254;NFE2:-0.696893222212;PAX5:-0.700216240811;ATF2:-0.713080812055;ZNF238:-0.731135003967;HMGA1,2:-0.73217371634;MED-1{core}:-0.733092972465;FOX{F1,F2,J1}:-0.748148931084;HLF:-0.757673033299;EGR1..3:-0.793098145078;FOXL1:-0.808838641139;CEBPA,B_DDIT3:-0.819184954838;ALX4:-0.834203004529;NFIL3:-0.843534319772;NKX3-2:-0.845990509175;SPZ1:-0.847195031529;NR3C1:-0.862046765836;TFAP4:-0.865539704624;IRF7:-0.925205992642;NFE2L1:-0.927775424188;TAL1_TCF{3,4,12}:-0.963302965813;TLX2:-0.969129003287;ETS1,2:-0.995192437437;HES1:-1.01937693148;EP300:-1.02555883349;HBP1_HMGB_SSRP1_UBTF:-1.08129462805;PPARG:-1.08767630749;TFCP2:-1.09398916036;FOX{D1,D2}:-1.18822774457;SRF:-1.18826626152;NR6A1:-1.19580766356;STAT2,4,6:-1.2075222586;GLI1..3:-1.20916036776;TFAP2{A,C}:-1.2210985539;IRF1,2:-1.23552401916;NFATC1..3:-1.25384600626;GTF2A1,2:-1.26297801085;TLX1..3_NFIC{dimer}:-1.28609062903;SMAD1..7,9:-1.36672200946;HMX1:-1.38948348146;MAFB:-1.52994490566;RXRA_VDR{dimer}:-1.90918803294;ESR1:-1.97842681198;ATF6:-1.98107848024 | |top_motifs=OCT4_SOX2{dimer}:2.99333611082;VSX1,2:2.5238250858;TOPORS:2.14328103778;GFI1:2.09320094424;ALX1:1.92769800526;SOX{8,9,10}:1.71864972627;E2F1..5:1.61661077017;NFY{A,B,C}:1.59000261184;POU2F1..3:1.48809492397;ZNF384:1.42617909446;ELK1,4_GABP{A,B1}:1.42060068984;RBPJ:1.39020037375;FOXM1:1.29892191703;PITX1..3:1.2807527424;TFDP1:1.21992071727;CDX1,2,4:1.21921706565;PBX1:1.21050105087;EVI1:1.13572665755;NRF1:1.10510042661;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.09690981743;PAX1,9:1.08017719377;SOX2:1.07110716173;ONECUT1,2:1.04469094877;FOXP1:1.01924982228;SOX17:1.01803294201;ZNF143:0.963631615018;STAT1,3:0.945775899973;IKZF2:0.923941921657;HOX{A4,D4}:0.884652815642;PAX8:0.878873321562;BREu{core}:0.856679509044;CUX2:0.832825892399;FOXQ1:0.823257058079;AIRE:0.807844594721;YY1:0.80504113555;CDC5L:0.729977320009;POU5F1:0.703395479282;LEF1_TCF7_TCF7L1,2:0.703075755045;FOXD3:0.693777626104;MYB:0.674236694521;KLF4:0.666966114182;PRRX1,2:0.644674433912;POU1F1:0.626163003704;T:0.586170423093;ZBTB16:0.562860517477;ZIC1..3:0.562709824954;PATZ1:0.561960620088;SP1:0.524080339509;FOX{I1,J2}:0.478776412999;GATA4:0.464859697312;ADNP_IRX_SIX_ZHX:0.437025988738;NANOG:0.436406481965;NKX2-3_NKX2-5:0.417421578191;POU6F1:0.35930328973;HIF1A:0.329628957191;NR5A1,2:0.301668654978;EN1,2:0.29623201897;FOXN1:0.284802687604;HSF1,2:0.268119422963;HOX{A5,B5}:0.266532893174;PAX2:0.261887434479;XCPE1{core}:0.25917126395;NKX6-1,2:0.248332653603;NKX2-1,4:0.219172215427;HOX{A6,A7,B6,B7}:0.209473724585;ARID5B:0.206657683929;ATF4:0.189531827273;STAT5{A,B}:0.172429946915;RORA:0.163488542441;TEF:0.157956043049;SNAI1..3:0.150212662192;CRX:0.133503769188;UFEwm:0.0929932543545;POU3F1..4:0.0624365352224;MZF1:0.0498737980522;GATA6:0.049315655038;FOXA2:0.0251078381063;ZFP161:0.0232571215077;IKZF1:0.0133127089162;HNF4A_NR2F1,2:0.00441302873405;HOXA9_MEIS1:-0.0606688622885;MYOD1:-0.0698506963512;MTF1:-0.0793751768355;ZEB1:-0.0958872820828;NFE2L2:-0.0967823274924;HAND1,2:-0.098293840317;NR1H4:-0.144386543366;HNF1A:-0.147108247606;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.150827350735;NANOG{mouse}:-0.163302403921;ATF5_CREB3:-0.164731858637;LMO2:-0.16678784242;PAX3,7:-0.18985618715;ELF1,2,4:-0.190863349414;MAZ:-0.21320042344;FOXO1,3,4:-0.216396375074;PAX4:-0.218249819004;LHX3,4:-0.219992999308;MYFfamily:-0.256440596674;ZNF148:-0.266870640748;RFX1:-0.289705420646;bHLH_family:-0.296306725581;HIC1:-0.337023449425;SOX5:-0.3426565565;SREBF1,2:-0.349831739588;NKX3-1:-0.353263240835;ZBTB6:-0.354716015065;RXR{A,B,G}:-0.370624663212;ESRRA:-0.375981241378;DMAP1_NCOR{1,2}_SMARC:-0.384244757591;REST:-0.385151219321;PRDM1:-0.390414816217;MYBL2:-0.391858771783;GTF2I:-0.409929273275;AHR_ARNT_ARNT2:-0.436363556257;NFIX:-0.438165877364;FOXP3:-0.440863870943;CREB1:-0.441898368989;NHLH1,2:-0.45542886155;XBP1:-0.457228121031;TEAD1:-0.460238645199;JUN:-0.463174348851;TBX4,5:-0.465622560518;NFKB1_REL_RELA:-0.469455768735;RREB1:-0.484784250483;TFAP2B:-0.489362517136;TBP:-0.489895483767;AR:-0.491831461087;TGIF1:-0.492764818449;BPTF:-0.516251226721;MEF2{A,B,C,D}:-0.519500356528;GFI1B:-0.519674183527;GZF1:-0.532364127976;MTE{core}:-0.547485674926;EBF1:-0.547891259143;FOS_FOS{B,L1}_JUN{B,D}:-0.552906909267;PAX6:-0.567228506168;FOSL2:-0.571906983385;NKX2-2,8:-0.60853180253;ZNF423:-0.60861009349;PDX1:-0.612399053511;SPI1:-0.618517106896;RUNX1..3:-0.634434709856;BACH2:-0.645959929676;GCM1,2:-0.655268631797;TP53:-0.662177543394;DBP:-0.669492801051;RFX2..5_RFXANK_RFXAP:-0.676682357988;SPIB:-0.695323124254;NFE2:-0.696893222212;PAX5:-0.700216240811;ATF2:-0.713080812055;ZNF238:-0.731135003967;HMGA1,2:-0.73217371634;MED-1{core}:-0.733092972465;FOX{F1,F2,J1}:-0.748148931084;HLF:-0.757673033299;EGR1..3:-0.793098145078;FOXL1:-0.808838641139;CEBPA,B_DDIT3:-0.819184954838;ALX4:-0.834203004529;NFIL3:-0.843534319772;NKX3-2:-0.845990509175;SPZ1:-0.847195031529;NR3C1:-0.862046765836;TFAP4:-0.865539704624;IRF7:-0.925205992642;NFE2L1:-0.927775424188;TAL1_TCF{3,4,12}:-0.963302965813;TLX2:-0.969129003287;ETS1,2:-0.995192437437;HES1:-1.01937693148;EP300:-1.02555883349;HBP1_HMGB_SSRP1_UBTF:-1.08129462805;PPARG:-1.08767630749;TFCP2:-1.09398916036;FOX{D1,D2}:-1.18822774457;SRF:-1.18826626152;NR6A1:-1.19580766356;STAT2,4,6:-1.2075222586;GLI1..3:-1.20916036776;TFAP2{A,C}:-1.2210985539;IRF1,2:-1.23552401916;NFATC1..3:-1.25384600626;GTF2A1,2:-1.26297801085;TLX1..3_NFIC{dimer}:-1.28609062903;SMAD1..7,9:-1.36672200946;HMX1:-1.38948348146;MAFB:-1.52994490566;RXRA_VDR{dimer}:-1.90918803294;ESR1:-1.97842681198;ATF6:-1.98107848024 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10790-110H7;search_select_hide=table117:FF:10790-110H7 | |||
}} | }} | ||
Latest revision as of 15:04, 3 June 2020
| Name: | teratocarcinoma cell line:NCC-IT-A3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11878 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11878
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11878
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.46 |
| 10 | 10 | 0.631 |
| 100 | 100 | 0.481 |
| 101 | 101 | 0.955 |
| 102 | 102 | 0.875 |
| 103 | 103 | 0.0322 |
| 104 | 104 | 0.592 |
| 105 | 105 | 0.159 |
| 106 | 106 | 0.00259 |
| 107 | 107 | 0.19 |
| 108 | 108 | 0.824 |
| 109 | 109 | 0.264 |
| 11 | 11 | 0.384 |
| 110 | 110 | 0.572 |
| 111 | 111 | 0.648 |
| 112 | 112 | 0.112 |
| 113 | 113 | 0.0541 |
| 114 | 114 | 0.184 |
| 115 | 115 | 0.874 |
| 116 | 116 | 0.893 |
| 117 | 117 | 0.973 |
| 118 | 118 | 0.73 |
| 119 | 119 | 0.32 |
| 12 | 12 | 0.603 |
| 120 | 120 | 0.596 |
| 121 | 121 | 0.275 |
| 122 | 122 | 0.687 |
| 123 | 123 | 0.205 |
| 124 | 124 | 0.548 |
| 125 | 125 | 0.163 |
| 126 | 126 | 0.463 |
| 127 | 127 | 0.282 |
| 128 | 128 | 0.216 |
| 129 | 129 | 0.316 |
| 13 | 13 | 0.291 |
| 130 | 130 | 0.121 |
| 131 | 131 | 0.48 |
| 132 | 132 | 0.732 |
| 133 | 133 | 0.196 |
| 134 | 134 | 0.41 |
| 135 | 135 | 0.0143 |
| 136 | 136 | 0.207 |
| 137 | 137 | 0.478 |
| 138 | 138 | 0.167 |
| 139 | 139 | 0.0418 |
| 14 | 14 | 0.804 |
| 140 | 140 | 0.609 |
| 141 | 141 | 0.773 |
| 142 | 142 | 0.817 |
| 143 | 143 | 0.0535 |
| 144 | 144 | 0.892 |
| 145 | 145 | 0.302 |
| 146 | 146 | 0.261 |
| 147 | 147 | 0.879 |
| 148 | 148 | 0.081 |
| 149 | 149 | 0.0365 |
| 15 | 15 | 0.183 |
| 150 | 150 | 0.586 |
| 151 | 151 | 0.0839 |
| 152 | 152 | 0.0349 |
| 153 | 153 | 0.617 |
| 154 | 154 | 0.908 |
| 155 | 155 | 0.992 |
| 156 | 156 | 0.274 |
| 157 | 157 | 0.729 |
| 158 | 158 | 0.376 |
| 159 | 159 | 0.245 |
| 16 | 16 | 0.25 |
| 160 | 160 | 0.212 |
| 161 | 161 | 0.55 |
| 162 | 162 | 0.862 |
| 163 | 163 | 0.215 |
| 164 | 164 | 0.322 |
| 165 | 165 | 0.454 |
| 166 | 166 | 0.729 |
| 167 | 167 | 0.542 |
| 168 | 168 | 0.21 |
| 169 | 169 | 0.0124 |
| 17 | 17 | 0.196 |
| 18 | 18 | 0.168 |
| 19 | 19 | 0.163 |
| 2 | 2 | 0.12 |
| 20 | 20 | 0.656 |
| 21 | 21 | 0.819 |
| 22 | 22 | 0.107 |
| 23 | 23 | 0.0091 |
| 24 | 24 | 0.622 |
| 25 | 25 | 0.77 |
| 26 | 26 | 0.63 |
| 27 | 27 | 0.0869 |
| 28 | 28 | 0.715 |
| 29 | 29 | 0.956 |
| 3 | 3 | 0.518 |
| 30 | 30 | 0.331 |
| 31 | 31 | 0.605 |
| 32 | 32 | 0.0243 |
| 33 | 33 | 0.911 |
| 34 | 34 | 0.332 |
| 35 | 35 | 0.84 |
| 36 | 36 | 0.948 |
| 37 | 37 | 0.317 |
| 38 | 38 | 0.417 |
| 39 | 39 | 0.426 |
| 4 | 4 | 0.803 |
| 40 | 40 | 0.898 |
| 41 | 41 | 0.197 |
| 42 | 42 | 0.816 |
| 43 | 43 | 0.23 |
| 44 | 44 | 0.909 |
| 45 | 45 | 0.24 |
| 46 | 46 | 0.114 |
| 47 | 47 | 0.558 |
| 48 | 48 | 0.657 |
| 49 | 49 | 0.329 |
| 5 | 5 | 0.305 |
| 50 | 50 | 0.947 |
| 51 | 51 | 0.397 |
| 52 | 52 | 0.45 |
| 53 | 53 | 0.86 |
| 54 | 54 | 0.499 |
| 55 | 55 | 0.189 |
| 56 | 56 | 0.497 |
| 57 | 57 | 0.846 |
| 58 | 58 | 0.205 |
| 59 | 59 | 0.0676 |
| 6 | 6 | 0.475 |
| 60 | 60 | 0.0738 |
| 61 | 61 | 0.734 |
| 62 | 62 | 0.0999 |
| 63 | 63 | 0.208 |
| 64 | 64 | 0.583 |
| 65 | 65 | 0.0546 |
| 66 | 66 | 0.109 |
| 67 | 67 | 0.733 |
| 68 | 68 | 0.158 |
| 69 | 69 | 0.626 |
| 7 | 7 | 0.919 |
| 70 | 70 | 0.0192 |
| 71 | 71 | 0.146 |
| 72 | 72 | 0.424 |
| 73 | 73 | 0.0685 |
| 74 | 74 | 0.832 |
| 75 | 75 | 0.931 |
| 76 | 76 | 0.701 |
| 77 | 77 | 0.075 |
| 78 | 78 | 0.717 |
| 79 | 79 | 0.0227 |
| 8 | 8 | 0.278 |
| 80 | 80 | 0.0227 |
| 81 | 81 | 0.574 |
| 82 | 82 | 0.104 |
| 83 | 83 | 0.633 |
| 84 | 84 | 0.509 |
| 85 | 85 | 0.0212 |
| 86 | 86 | 0.587 |
| 87 | 87 | 0.519 |
| 88 | 88 | 0.42 |
| 89 | 89 | 0.0154 |
| 9 | 9 | 0.0419 |
| 90 | 90 | 0.72 |
| 91 | 91 | 0.513 |
| 92 | 92 | 0.032 |
| 93 | 93 | 0.384 |
| 94 | 94 | 0.281 |
| 95 | 95 | 0.399 |
| 96 | 96 | 0.197 |
| 97 | 97 | 0.761 |
| 98 | 98 | 0.927 |
| 99 | 99 | 0.986 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11878
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100306 teratocarcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100306 (teratocarcinoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
