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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005010
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005010
|accession_numbers=CAGE;DRX007822;DRR008694;DRZ000119;DRZ001504;DRZ011469;DRZ012854
|accession_numbers_RNASeq=RNA-Seq;DRX057142;DRR062901;DRZ007977
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:299,DOID:305,DOID:4
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:299
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100167
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|
|
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 35: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg38.nobarcode.ctss.bed.gz
|id=FF:10796-110I4
|id=FF:10796-110I4
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100167
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|is_obsolete=
|library_id=CNhs11882
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|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10796
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10796
|name=adenocarcinoma cell line:IM95m
|name=adenocarcinoma cell line:IM95m
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 61:
|profile_cagescan=,,,
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|profile_hcage=CNhs11882,LSID830,release010,COMPLETED
|profile_hcage=CNhs11882,LSID830,release010,COMPLETED
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|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=110
|rna_box=110
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|rna_catalog_number=
Line 56: Line 78:
|rna_tube_id=110I4
|rna_tube_id=110I4
|rna_weight_ug=210.46725
|rna_weight_ug=210.46725
|rnaseq_library_id=RDhi10085
|sample_age=63
|sample_age=63
|sample_category=cell lines
|sample_cell_catalog=jcrb1075.1
|sample_cell_catalog=jcrb1075.1
|sample_cell_line=IM95m
|sample_cell_line=IM95m
Line 69: Line 93:
|sample_ethnicity=J
|sample_ethnicity=J
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.4085601361832e-241!GO:0005737;cytoplasm;2.39859145550834e-197!GO:0043227;membrane-bound organelle;2.55737806707811e-190!GO:0043231;intracellular membrane-bound organelle;5.02610329495341e-190!GO:0043226;organelle;1.1758184340208e-184!GO:0043229;intracellular organelle;1.02028266170128e-183!GO:0044422;organelle part;6.81214570089211e-150!GO:0044444;cytoplasmic part;7.51052349043014e-148!GO:0044446;intracellular organelle part;8.51666713082614e-148!GO:0044237;cellular metabolic process;2.48073611075425e-94!GO:0032991;macromolecular complex;5.86130163914927e-90!GO:0005739;mitochondrion;1.59404202608479e-87!GO:0044238;primary metabolic process;7.92528475974121e-87!GO:0030529;ribonucleoprotein complex;5.75314522680117e-81!GO:0043233;organelle lumen;6.41569253660629e-73!GO:0031974;membrane-enclosed lumen;6.41569253660629e-73!GO:0043170;macromolecule metabolic process;4.52148828981565e-71!GO:0003723;RNA binding;1.41394103082284e-66!GO:0044428;nuclear part;2.48135941870677e-66!GO:0005634;nucleus;1.01710677131102e-63!GO:0031090;organelle membrane;2.06215485154019e-62!GO:0044429;mitochondrial part;1.26660784141059e-57!GO:0005515;protein binding;1.78558188486503e-52!GO:0005840;ribosome;1.50476815821081e-51!GO:0006412;translation;5.28087591360059e-49!GO:0031967;organelle envelope;1.01887967847836e-48!GO:0031975;envelope;2.59152635682257e-48!GO:0009058;biosynthetic process;6.27788436489566e-47!GO:0006396;RNA processing;8.63343313553624e-46!GO:0019538;protein metabolic process;4.81110986836039e-45!GO:0003735;structural constituent of ribosome;1.02487417008165e-44!GO:0043234;protein complex;2.23846601759812e-44!GO:0044267;cellular protein metabolic process;3.96262749580711e-42!GO:0044249;cellular biosynthetic process;8.95528739689445e-42!GO:0033036;macromolecule localization;2.21241963000827e-41!GO:0015031;protein transport;3.83743647041014e-41!GO:0044260;cellular macromolecule metabolic process;9.31234161049615e-41!GO:0031981;nuclear lumen;1.64927319796414e-40!GO:0005829;cytosol;4.30368838705868e-40!GO:0009059;macromolecule biosynthetic process;1.03829306830485e-38!GO:0008104;protein localization;3.75002261629286e-38!GO:0045184;establishment of protein localization;5.91482332382754e-38!GO:0033279;ribosomal subunit;2.80776052814299e-37!GO:0005740;mitochondrial envelope;6.94225350178461e-37!GO:0043283;biopolymer metabolic process;9.32245676198151e-37!GO:0016071;mRNA metabolic process;2.11343251394091e-36!GO:0019866;organelle inner membrane;8.78208675952849e-36!GO:0031966;mitochondrial membrane;2.97854848201596e-35!GO:0005743;mitochondrial inner membrane;1.78731604459862e-33!GO:0016043;cellular component organization and biogenesis;3.57545468976504e-32!GO:0006397;mRNA processing;5.06725744507388e-32!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.00395540217721e-31!GO:0008380;RNA splicing;1.56047188060915e-31!GO:0043228;non-membrane-bound organelle;2.11352632482153e-30!GO:0043232;intracellular non-membrane-bound organelle;2.11352632482153e-30!GO:0010467;gene expression;2.41172851990873e-30!GO:0006259;DNA metabolic process;9.12555700816652e-30!GO:0046907;intracellular transport;7.48586694997204e-29!GO:0065003;macromolecular complex assembly;1.02912713813578e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;6.68567176435759e-28!GO:0012505;endomembrane system;1.34941095815613e-26!GO:0031980;mitochondrial lumen;1.98043546424339e-26!GO:0005759;mitochondrial matrix;1.98043546424339e-26!GO:0006886;intracellular protein transport;5.12461075563723e-26!GO:0006119;oxidative phosphorylation;4.83409745264216e-25!GO:0007049;cell cycle;6.08058630996611e-25!GO:0006996;organelle organization and biogenesis;1.51601392698626e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.76476939393942e-24!GO:0022607;cellular component assembly;2.75201955313067e-24!GO:0005654;nucleoplasm;5.70664354453542e-24!GO:0000166;nucleotide binding;7.27915556437857e-24!GO:0044455;mitochondrial membrane part;6.97453499648598e-23!GO:0005681;spliceosome;2.37229206842726e-22!GO:0005783;endoplasmic reticulum;4.49432868212589e-22!GO:0044445;cytosolic part;3.61393267059336e-21!GO:0044432;endoplasmic reticulum part;4.98857069614358e-21!GO:0006974;response to DNA damage stimulus;2.734348880053e-20!GO:0015935;small ribosomal subunit;8.54666572836871e-20!GO:0051186;cofactor metabolic process;1.54281741730276e-19!GO:0005746;mitochondrial respiratory chain;2.85309022533237e-19!GO:0016874;ligase activity;2.93821721288217e-19!GO:0044451;nucleoplasm part;6.64384855303835e-19!GO:0044265;cellular macromolecule catabolic process;9.46400376831954e-19!GO:0015934;large ribosomal subunit;1.27426646206199e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.57131089001186e-18!GO:0051641;cellular localization;2.47541755500592e-18!GO:0051649;establishment of cellular localization;3.25522150744408e-18!GO:0044248;cellular catabolic process;3.74742763432831e-18!GO:0022402;cell cycle process;5.2322816112237e-18!GO:0005730;nucleolus;6.03921234140423e-18!GO:0050136;NADH dehydrogenase (quinone) activity;2.05230479098075e-17!GO:0003954;NADH dehydrogenase activity;2.05230479098075e-17!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.05230479098075e-17!GO:0000278;mitotic cell cycle;3.03470887912843e-17!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.65327975374391e-17!GO:0022618;protein-RNA complex assembly;6.37672798166638e-17!GO:0005789;endoplasmic reticulum membrane;6.88553048021043e-17!GO:0016462;pyrophosphatase activity;8.08660651295117e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.3159675561944e-17!GO:0017076;purine nucleotide binding;8.87529671343367e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.00243521099338e-16!GO:0005761;mitochondrial ribosome;1.26382418981711e-16!GO:0000313;organellar ribosome;1.26382418981711e-16!GO:0006732;coenzyme metabolic process;1.53760961304515e-16!GO:0032553;ribonucleotide binding;2.49484832135903e-16!GO:0032555;purine ribonucleotide binding;2.49484832135903e-16!GO:0009719;response to endogenous stimulus;2.49484832135903e-16!GO:0006281;DNA repair;2.91512573396114e-16!GO:0006457;protein folding;3.09788341436868e-16!GO:0003676;nucleic acid binding;4.8434895165594e-16!GO:0030554;adenyl nucleotide binding;5.21433470176223e-16!GO:0005524;ATP binding;6.26381370225579e-16!GO:0005694;chromosome;7.06751201605762e-16!GO:0032559;adenyl ribonucleotide binding;9.47148687070539e-16!GO:0017111;nucleoside-triphosphatase activity;1.18067180958148e-15!GO:0042775;organelle ATP synthesis coupled electron transport;1.3387077840084e-15!GO:0042773;ATP synthesis coupled electron transport;1.3387077840084e-15!GO:0006512;ubiquitin cycle;2.2892432628493e-15!GO:0030964;NADH dehydrogenase complex (quinone);3.16824525942425e-15!GO:0045271;respiratory chain complex I;3.16824525942425e-15!GO:0005747;mitochondrial respiratory chain complex I;3.16824525942425e-15!GO:0000502;proteasome complex (sensu Eukaryota);3.68403526316406e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.86250523466032e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.29383236795785e-15!GO:0009057;macromolecule catabolic process;1.1550427639931e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.05353008021114e-14!GO:0006605;protein targeting;2.25897966366205e-14!GO:0019941;modification-dependent protein catabolic process;3.80293948571139e-14!GO:0043632;modification-dependent macromolecule catabolic process;3.80293948571139e-14!GO:0006260;DNA replication;3.81637860231411e-14!GO:0044427;chromosomal part;4.07264510246965e-14!GO:0006511;ubiquitin-dependent protein catabolic process;5.10689722810195e-14!GO:0044257;cellular protein catabolic process;5.64263505137583e-14!GO:0022403;cell cycle phase;8.28655906955728e-14!GO:0008135;translation factor activity, nucleic acid binding;8.83342310371432e-14!GO:0048770;pigment granule;1.00915653585274e-13!GO:0042470;melanosome;1.00915653585274e-13!GO:0043412;biopolymer modification;1.10005644553483e-13!GO:0043285;biopolymer catabolic process;1.14276143203522e-13!GO:0008134;transcription factor binding;1.18377717097415e-13!GO:0009055;electron carrier activity;4.00202983261036e-13!GO:0016887;ATPase activity;4.40490235055079e-13!GO:0048193;Golgi vesicle transport;5.06752932879682e-13!GO:0005794;Golgi apparatus;1.02844686588035e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.0796011328694e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.16978706507217e-12!GO:0000375;RNA splicing, via transesterification reactions;1.16978706507217e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.16978706507217e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.25587787468061e-12!GO:0000087;M phase of mitotic cell cycle;1.50620194946331e-12!GO:0005635;nuclear envelope;1.73703141525271e-12!GO:0042623;ATPase activity, coupled;2.89767248041798e-12!GO:0007067;mitosis;3.08354340880651e-12!GO:0051301;cell division;4.71044891421097e-12!GO:0042254;ribosome biogenesis and assembly;7.09245256942849e-12!GO:0006464;protein modification process;1.14745092672676e-11!GO:0031965;nuclear membrane;1.22774487239351e-11!GO:0016070;RNA metabolic process;1.23102887555059e-11!GO:0012501;programmed cell death;1.89494241105924e-11!GO:0006915;apoptosis;2.0570816141941e-11!GO:0051276;chromosome organization and biogenesis;2.53310928919513e-11!GO:0016491;oxidoreductase activity;2.74909417247225e-11!GO:0044453;nuclear membrane part;3.43002294457674e-11!GO:0016740;transferase activity;3.62741483562526e-11!GO:0000279;M phase;5.53928568048382e-11!GO:0006446;regulation of translational initiation;7.14642622321672e-11!GO:0051188;cofactor biosynthetic process;8.22037779132861e-11!GO:0009056;catabolic process;9.15631063255146e-11!GO:0006399;tRNA metabolic process;9.60765530987896e-11!GO:0030163;protein catabolic process;1.05571143167458e-10!GO:0003743;translation initiation factor activity;1.06305913202931e-10!GO:0006413;translational initiation;1.28387410318655e-10!GO:0051082;unfolded protein binding;1.78117053413832e-10!GO:0008219;cell death;1.80108980587307e-10!GO:0016265;death;1.80108980587307e-10!GO:0016604;nuclear body;2.4944312836816e-10!GO:0009060;aerobic respiration;3.73653546662494e-10!GO:0006913;nucleocytoplasmic transport;4.50311277008779e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.29580378224673e-10!GO:0043687;post-translational protein modification;5.77446217959927e-10!GO:0016787;hydrolase activity;6.87048771343854e-10!GO:0051169;nuclear transport;8.97255243368356e-10!GO:0006366;transcription from RNA polymerase II promoter;1.32085367845506e-09!GO:0045333;cellular respiration;1.58954295254304e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.16105575435743e-09!GO:0005643;nuclear pore;2.22057012181941e-09!GO:0006091;generation of precursor metabolites and energy;2.50013813442435e-09!GO:0016192;vesicle-mediated transport;4.20935752916512e-09!GO:0009108;coenzyme biosynthetic process;5.03959629303035e-09!GO:0006461;protein complex assembly;5.73569002460796e-09!GO:0006163;purine nucleotide metabolic process;7.14415096636761e-09!GO:0019829;cation-transporting ATPase activity;8.2367412819818e-09!GO:0015078;hydrogen ion transmembrane transporter activity;9.92433301354289e-09!GO:0015986;ATP synthesis coupled proton transport;9.93168668932424e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.93168668932424e-09!GO:0006082;organic acid metabolic process;1.39291385917392e-08!GO:0051726;regulation of cell cycle;1.45325739681669e-08!GO:0046930;pore complex;1.59640474606917e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;1.63125979355312e-08!GO:0065002;intracellular protein transport across a membrane;1.64605541991801e-08!GO:0000074;regulation of progression through cell cycle;1.88646026576746e-08!GO:0019752;carboxylic acid metabolic process;1.92242735815056e-08!GO:0009259;ribonucleotide metabolic process;2.05982739062972e-08!GO:0016072;rRNA metabolic process;2.18241341065854e-08!GO:0006099;tricarboxylic acid cycle;2.61578928865936e-08!GO:0046356;acetyl-CoA catabolic process;2.61578928865936e-08!GO:0050657;nucleic acid transport;2.81256825733407e-08!GO:0051236;establishment of RNA localization;2.81256825733407e-08!GO:0050658;RNA transport;2.81256825733407e-08!GO:0006403;RNA localization;3.26845096841991e-08!GO:0004386;helicase activity;3.64120906982714e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.15924977380471e-08!GO:0009150;purine ribonucleotide metabolic process;4.33295492751861e-08!GO:0006323;DNA packaging;4.60815922913102e-08!GO:0006164;purine nucleotide biosynthetic process;4.72365394644236e-08!GO:0005768;endosome;4.88960912034276e-08!GO:0000785;chromatin;5.3236010077159e-08!GO:0046034;ATP metabolic process;5.46599486731578e-08!GO:0008565;protein transporter activity;5.86055545845781e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.87047634556089e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.87047634556089e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.87047634556089e-08!GO:0016607;nuclear speck;6.76853313418568e-08!GO:0017038;protein import;6.81051100769865e-08!GO:0006364;rRNA processing;7.30336682985685e-08!GO:0006752;group transfer coenzyme metabolic process;7.50493860566782e-08!GO:0006084;acetyl-CoA metabolic process;8.46253732358703e-08!GO:0003712;transcription cofactor activity;8.66965409038355e-08!GO:0007005;mitochondrion organization and biogenesis;9.09847102487095e-08!GO:0006754;ATP biosynthetic process;9.91343189294253e-08!GO:0006753;nucleoside phosphate metabolic process;9.91343189294253e-08!GO:0043623;cellular protein complex assembly;1.0974184253711e-07!GO:0043038;amino acid activation;1.15309090398514e-07!GO:0006418;tRNA aminoacylation for protein translation;1.15309090398514e-07!GO:0043039;tRNA aminoacylation;1.15309090398514e-07!GO:0006793;phosphorus metabolic process;1.23248208942854e-07!GO:0006796;phosphate metabolic process;1.23248208942854e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.33140658803422e-07!GO:0008639;small protein conjugating enzyme activity;1.5086554966843e-07!GO:0009141;nucleoside triphosphate metabolic process;1.65522894294885e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.69160374371765e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.69160374371765e-07!GO:0016779;nucleotidyltransferase activity;1.71870370031004e-07!GO:0008026;ATP-dependent helicase activity;2.35500276929647e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.77259912109868e-07!GO:0004842;ubiquitin-protein ligase activity;2.85137813037323e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.88560115656466e-07!GO:0005793;ER-Golgi intermediate compartment;3.0436237621555e-07!GO:0009260;ribonucleotide biosynthetic process;3.10829436661548e-07!GO:0009109;coenzyme catabolic process;3.67049692675844e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.84588593277288e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.84588593277288e-07!GO:0042981;regulation of apoptosis;4.21887650049688e-07!GO:0019787;small conjugating protein ligase activity;4.41786433963465e-07!GO:0045259;proton-transporting ATP synthase complex;4.70530085468359e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.75049279878226e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.82602051631478e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.82602051631478e-07!GO:0043067;regulation of programmed cell death;6.38042878969756e-07!GO:0030120;vesicle coat;7.00592944826665e-07!GO:0030662;coated vesicle membrane;7.00592944826665e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.03163700405375e-07!GO:0051028;mRNA transport;7.68042218320498e-07!GO:0065004;protein-DNA complex assembly;9.79320036700889e-07!GO:0006333;chromatin assembly or disassembly;1.0277985288116e-06!GO:0051187;cofactor catabolic process;1.04247449391456e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.10409758569168e-06!GO:0006261;DNA-dependent DNA replication;1.1560846893284e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.29658727394292e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.41063250375046e-06!GO:0000245;spliceosome assembly;1.7283471686377e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.85466065095216e-06!GO:0009117;nucleotide metabolic process;3.04079307975755e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.11875965188511e-06!GO:0043069;negative regulation of programmed cell death;3.20642286600514e-06!GO:0044255;cellular lipid metabolic process;3.26882822877895e-06!GO:0016881;acid-amino acid ligase activity;3.80275537352717e-06!GO:0006916;anti-apoptosis;3.92301651719353e-06!GO:0043066;negative regulation of apoptosis;3.93037668038184e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.39261311885746e-06!GO:0016310;phosphorylation;4.48748982611526e-06!GO:0048475;coated membrane;4.82366400980087e-06!GO:0030117;membrane coat;4.82366400980087e-06!GO:0000314;organellar small ribosomal subunit;5.93915796956498e-06!GO:0005763;mitochondrial small ribosomal subunit;5.93915796956498e-06!GO:0005667;transcription factor complex;6.18939769669447e-06!GO:0044431;Golgi apparatus part;6.59470375811687e-06!GO:0000775;chromosome, pericentric region;6.62482107720705e-06!GO:0016567;protein ubiquitination;7.09355392118354e-06!GO:0005762;mitochondrial large ribosomal subunit;8.44540152038607e-06!GO:0000315;organellar large ribosomal subunit;8.44540152038607e-06!GO:0032446;protein modification by small protein conjugation;1.21062728593922e-05!GO:0006613;cotranslational protein targeting to membrane;1.3111015233826e-05!GO:0050662;coenzyme binding;1.35962448374941e-05!GO:0016126;sterol biosynthetic process;1.40790787300922e-05!GO:0008654;phospholipid biosynthetic process;1.41152333966649e-05!GO:0005815;microtubule organizing center;1.46348024341825e-05!GO:0006066;alcohol metabolic process;1.49355957780232e-05!GO:0043566;structure-specific DNA binding;1.519889247756e-05!GO:0051246;regulation of protein metabolic process;1.53695488575771e-05!GO:0008610;lipid biosynthetic process;1.5375576969347e-05!GO:0051329;interphase of mitotic cell cycle;1.62908475402671e-05!GO:0005813;centrosome;1.69978648698849e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.75418651258748e-05!GO:0004298;threonine endopeptidase activity;1.84712524856244e-05!GO:0007051;spindle organization and biogenesis;1.98241286147154e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.06917588914737e-05!GO:0016568;chromatin modification;2.18126034520045e-05!GO:0005798;Golgi-associated vesicle;2.23628903360487e-05!GO:0051325;interphase;2.31505722032719e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.371555223544e-05!GO:0005819;spindle;3.16664572916974e-05!GO:0015630;microtubule cytoskeleton;3.26657606155711e-05!GO:0044440;endosomal part;3.35566026598024e-05!GO:0010008;endosome membrane;3.35566026598024e-05!GO:0016564;transcription repressor activity;3.40827457983115e-05!GO:0016853;isomerase activity;3.49720944997117e-05!GO:0003724;RNA helicase activity;3.78200519892939e-05!GO:0051170;nuclear import;3.92166831158075e-05!GO:0051168;nuclear export;4.1607211792634e-05!GO:0005788;endoplasmic reticulum lumen;4.34486258022381e-05!GO:0000139;Golgi membrane;4.34486258022381e-05!GO:0005773;vacuole;4.50021093333567e-05!GO:0003899;DNA-directed RNA polymerase activity;4.9611007126392e-05!GO:0006695;cholesterol biosynthetic process;5.76814882230276e-05!GO:0000151;ubiquitin ligase complex;7.26503524798905e-05!GO:0019318;hexose metabolic process;7.32615590439901e-05!GO:0048037;cofactor binding;7.42543991693991e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;7.4628849028074e-05!GO:0015399;primary active transmembrane transporter activity;7.4628849028074e-05!GO:0005996;monosaccharide metabolic process;7.47762940237734e-05!GO:0005770;late endosome;7.54683955586706e-05!GO:0006606;protein import into nucleus;8.69947979583613e-05!GO:0051427;hormone receptor binding;8.83073909551471e-05!GO:0006118;electron transport;8.91708529771463e-05!GO:0006629;lipid metabolic process;9.04771996630463e-05!GO:0003697;single-stranded DNA binding;9.04771996630463e-05!GO:0005657;replication fork;9.06196115586333e-05!GO:0015980;energy derivation by oxidation of organic compounds;9.12180345890578e-05!GO:0016563;transcription activator activity;9.8309652897351e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;9.91062120163033e-05!GO:0044262;cellular carbohydrate metabolic process;0.000101172441073278!GO:0006334;nucleosome assembly;0.000116691375618727!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000125683601107973!GO:0031988;membrane-bound vesicle;0.000130455612806403!GO:0048523;negative regulation of cellular process;0.000157434553685771!GO:0043021;ribonucleoprotein binding;0.000163202656923028!GO:0006302;double-strand break repair;0.000169590148711942!GO:0003729;mRNA binding;0.000169607427180361!GO:0035257;nuclear hormone receptor binding;0.000181527762225563!GO:0019867;outer membrane;0.000181644197055864!GO:0045454;cell redox homeostasis;0.000183165636019052!GO:0000323;lytic vacuole;0.000183165636019052!GO:0005764;lysosome;0.000183165636019052!GO:0031968;organelle outer membrane;0.000186197713637794!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000188074712130335!GO:0006612;protein targeting to membrane;0.000193913010393451!GO:0031497;chromatin assembly;0.000197719975193867!GO:0006520;amino acid metabolic process;0.000207173502338068!GO:0015992;proton transport;0.000208160253767127!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000221937460568055!GO:0008033;tRNA processing;0.000222185676421576!GO:0048471;perinuclear region of cytoplasm;0.000260020631241841!GO:0005741;mitochondrial outer membrane;0.000284970790631385!GO:0006818;hydrogen transport;0.000287077699474787!GO:0005048;signal sequence binding;0.000301570854571142!GO:0022890;inorganic cation transmembrane transporter activity;0.000309489668960216!GO:0016023;cytoplasmic membrane-bound vesicle;0.000333710871960253!GO:0006414;translational elongation;0.000342658640066691!GO:0043492;ATPase activity, coupled to movement of substances;0.000382205734433986!GO:0003713;transcription coactivator activity;0.000399760609391923!GO:0031324;negative regulation of cellular metabolic process;0.000438754958157671!GO:0006401;RNA catabolic process;0.00043991404860728!GO:0043681;protein import into mitochondrion;0.000440560565105929!GO:0005769;early endosome;0.000455022518512659!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000458029482835631!GO:0051052;regulation of DNA metabolic process;0.000471857660468593!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000493534695782714!GO:0031982;vesicle;0.000499758145648178!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000499758145648178!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000505978945897316!GO:0006626;protein targeting to mitochondrion;0.000505978945897316!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00051644639356648!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000601577427987147!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000612915939086891!GO:0006650;glycerophospholipid metabolic process;0.000647453900340678!GO:0006402;mRNA catabolic process;0.000648388671661243!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000648388671661243!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000648388671661243!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000648388671661243!GO:0051287;NAD binding;0.000692595894264327!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.000696963376622367!GO:0046474;glycerophospholipid biosynthetic process;0.000710104043630072!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000728567086642244!GO:0042802;identical protein binding;0.000795048832147094!GO:0046489;phosphoinositide biosynthetic process;0.000797094492425898!GO:0051789;response to protein stimulus;0.000905688028722379!GO:0006986;response to unfolded protein;0.000905688028722379!GO:0006839;mitochondrial transport;0.00090829409652183!GO:0008186;RNA-dependent ATPase activity;0.0009229445112043!GO:0000075;cell cycle checkpoint;0.000926084961489034!GO:0051920;peroxiredoxin activity;0.00096228226240174!GO:0009892;negative regulation of metabolic process;0.00104190514644972!GO:0003684;damaged DNA binding;0.00113137770411527!GO:0007059;chromosome segregation;0.00114027891021674!GO:0016363;nuclear matrix;0.00114066525161801!GO:0003714;transcription corepressor activity;0.00117626572890558!GO:0005777;peroxisome;0.00121080277347084!GO:0042579;microbody;0.00121080277347084!GO:0030658;transport vesicle membrane;0.00121448078812327!GO:0033116;ER-Golgi intermediate compartment membrane;0.00122370237451818!GO:0051252;regulation of RNA metabolic process;0.00123640806840903!GO:0008094;DNA-dependent ATPase activity;0.00130728351098887!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00135120169215223!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00135120169215223!GO:0016741;transferase activity, transferring one-carbon groups;0.0013654711038778!GO:0000049;tRNA binding;0.00142860737266797!GO:0030176;integral to endoplasmic reticulum membrane;0.00143091535876379!GO:0031410;cytoplasmic vesicle;0.00150159001271036!GO:0008168;methyltransferase activity;0.0015232112816396!GO:0030384;phosphoinositide metabolic process;0.00162967433943329!GO:0000287;magnesium ion binding;0.00163614787374865!GO:0005885;Arp2/3 protein complex;0.0016428911634559!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0016428911634559!GO:0015002;heme-copper terminal oxidase activity;0.0016428911634559!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0016428911634559!GO:0004129;cytochrome-c oxidase activity;0.0016428911634559!GO:0065009;regulation of a molecular function;0.00173141369819577!GO:0042770;DNA damage response, signal transduction;0.00180073308979213!GO:0008629;induction of apoptosis by intracellular signals;0.00196763404492805!GO:0009165;nucleotide biosynthetic process;0.00196763404492805!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0021637919704309!GO:0046483;heterocycle metabolic process;0.00218129002334754!GO:0048519;negative regulation of biological process;0.00227259911361868!GO:0006519;amino acid and derivative metabolic process;0.00227259911361868!GO:0043488;regulation of mRNA stability;0.0023137181194648!GO:0043487;regulation of RNA stability;0.0023137181194648!GO:0003690;double-stranded DNA binding;0.0023178921942556!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.00236385867787182!GO:0019843;rRNA binding;0.0024171052637638!GO:0016859;cis-trans isomerase activity;0.00248189590445025!GO:0004004;ATP-dependent RNA helicase activity;0.00256329512707941!GO:0005684;U2-dependent spliceosome;0.00256329512707941!GO:0048500;signal recognition particle;0.00258645407745214!GO:0030660;Golgi-associated vesicle membrane;0.00259584969639647!GO:0032787;monocarboxylic acid metabolic process;0.00261579520269008!GO:0007006;mitochondrial membrane organization and biogenesis;0.00264743819941046!GO:0007052;mitotic spindle organization and biogenesis;0.00266008689236475!GO:0032508;DNA duplex unwinding;0.00266430611228345!GO:0032392;DNA geometric change;0.00266430611228345!GO:0044452;nucleolar part;0.00266430611228345!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00268818202210767!GO:0006950;response to stress;0.00282653350698916!GO:0030867;rough endoplasmic reticulum membrane;0.00284115235634527!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00292734351199435!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00297366726547822!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0031342138861026!GO:0006611;protein export from nucleus;0.00318754366570801!GO:0030133;transport vesicle;0.00333409036250081!GO:0008632;apoptotic program;0.00385745472139822!GO:0045786;negative regulation of progression through cell cycle;0.00389673072809092!GO:0030659;cytoplasmic vesicle membrane;0.00402045050569037!GO:0000786;nucleosome;0.00402050266915383!GO:0016791;phosphoric monoester hydrolase activity;0.00402050266915383!GO:0004518;nuclease activity;0.00422834035041843!GO:0005791;rough endoplasmic reticulum;0.00422834035041843!GO:0016408;C-acyltransferase activity;0.00429257381112592!GO:0001889;liver development;0.00429800072573157!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00437355701656636!GO:0044438;microbody part;0.00451110747061332!GO:0044439;peroxisomal part;0.00451110747061332!GO:0000059;protein import into nucleus, docking;0.00451120192091362!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00454959276639621!GO:0009081;branched chain family amino acid metabolic process;0.00455088098825009!GO:0006595;polyamine metabolic process;0.00458387362705628!GO:0000776;kinetochore;0.00460733070878834!GO:0012506;vesicle membrane;0.00486081421511322!GO:0007088;regulation of mitosis;0.00493940553765873!GO:0006506;GPI anchor biosynthetic process;0.00524286614185628!GO:0006268;DNA unwinding during replication;0.00532401660460297!GO:0031252;leading edge;0.00532892910480037!GO:0006006;glucose metabolic process;0.00541603561367012!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00569699422129121!GO:0006505;GPI anchor metabolic process;0.0057142252775213!GO:0050794;regulation of cellular process;0.00587520104215832!GO:0005637;nuclear inner membrane;0.00587551681291865!GO:0031072;heat shock protein binding;0.00590307096866516!GO:0008312;7S RNA binding;0.0059263544315856!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00607727150992332!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00609074058344951!GO:0006284;base-excision repair;0.00623517274649271!GO:0006892;post-Golgi vesicle-mediated transport;0.00646472912277558!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00661699147606566!GO:0045047;protein targeting to ER;0.00661699147606566!GO:0004177;aminopeptidase activity;0.00685122156887634!GO:0005525;GTP binding;0.00726524594821199!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00727921362268726!GO:0004674;protein serine/threonine kinase activity;0.0072834689999412!GO:0006383;transcription from RNA polymerase III promoter;0.00738309222024517!GO:0000096;sulfur amino acid metabolic process;0.00744326757822976!GO:0006405;RNA export from nucleus;0.00753336069624578!GO:0046467;membrane lipid biosynthetic process;0.00755244204828052!GO:0030118;clathrin coat;0.00756418171009779!GO:0019899;enzyme binding;0.0075963981032546!GO:0005975;carbohydrate metabolic process;0.00791309489096108!GO:0006733;oxidoreduction coenzyme metabolic process;0.00795745760682169!GO:0006644;phospholipid metabolic process;0.00798202813787594!GO:0030134;ER to Golgi transport vesicle;0.00799991507934364!GO:0005876;spindle microtubule;0.00799991507934364!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00803089113009127!GO:0006352;transcription initiation;0.00804256889063534!GO:0007243;protein kinase cascade;0.0081151780678316!GO:0031903;microbody membrane;0.00819110596595064!GO:0005778;peroxisomal membrane;0.00819110596595064!GO:0016125;sterol metabolic process;0.00819628994221688!GO:0030127;COPII vesicle coat;0.00821628775008972!GO:0012507;ER to Golgi transport vesicle membrane;0.00821628775008972!GO:0003702;RNA polymerase II transcription factor activity;0.00825824798244744!GO:0008234;cysteine-type peptidase activity;0.00832666001219363!GO:0030132;clathrin coat of coated pit;0.00849892493870822!GO:0008139;nuclear localization sequence binding;0.00850004189585347!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00850004189585347!GO:0044433;cytoplasmic vesicle part;0.00887793948424766!GO:0008299;isoprenoid biosynthetic process;0.00907575089528718!GO:0051338;regulation of transferase activity;0.00914384986051979!GO:0006807;nitrogen compound metabolic process;0.00914384986051979!GO:0031124;mRNA 3'-end processing;0.00949072227698822!GO:0006767;water-soluble vitamin metabolic process;0.00955563233510655!GO:0003678;DNA helicase activity;0.00964297439477835!GO:0006643;membrane lipid metabolic process;0.00967979069152386!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00972735217060847!GO:0000725;recombinational repair;0.0100471699938331!GO:0000724;double-strand break repair via homologous recombination;0.0100471699938331!GO:0006275;regulation of DNA replication;0.0103430190805168!GO:0031529;ruffle organization and biogenesis;0.0106786529654106!GO:0016788;hydrolase activity, acting on ester bonds;0.010871204763843!GO:0035258;steroid hormone receptor binding;0.0110459654407911!GO:0030663;COPI coated vesicle membrane;0.0112259988932247!GO:0030126;COPI vesicle coat;0.0112259988932247!GO:0006289;nucleotide-excision repair;0.0117745100309213!GO:0006310;DNA recombination;0.011830483252184!GO:0030880;RNA polymerase complex;0.0118465958134339!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0120722308109781!GO:0032287;myelin maintenance in the peripheral nervous system;0.0121279374717841!GO:0032838;cell projection cytoplasm;0.0121279374717841!GO:0033081;regulation of T cell differentiation in the thymus;0.0121279374717841!GO:0043217;myelin maintenance;0.0121279374717841!GO:0060087;relaxation of vascular smooth muscle;0.0121279374717841!GO:0032839;dendrite cytoplasm;0.0121279374717841!GO:0003682;chromatin binding;0.0125645576119464!GO:0006730;one-carbon compound metabolic process;0.0126581867598494!GO:0000086;G2/M transition of mitotic cell cycle;0.0136704114555179!GO:0000082;G1/S transition of mitotic cell cycle;0.0137309955921624!GO:0032507;maintenance of cellular protein localization;0.0138616890813259!GO:0051087;chaperone binding;0.0138656041195003!GO:0008652;amino acid biosynthetic process;0.0139367667437575!GO:0016584;nucleosome positioning;0.0140508987788439!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0141631840792623!GO:0030125;clathrin vesicle coat;0.0141631840792623!GO:0030665;clathrin coated vesicle membrane;0.0141631840792623!GO:0004576;oligosaccharyl transferase activity;0.0143382989033314!GO:0006417;regulation of translation;0.0144384356224592!GO:0005832;chaperonin-containing T-complex;0.0144629967924368!GO:0046365;monosaccharide catabolic process;0.0150171787148353!GO:0008022;protein C-terminus binding;0.0150213542350065!GO:0048522;positive regulation of cellular process;0.015327255341915!GO:0003756;protein disulfide isomerase activity;0.015327255341915!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.015327255341915!GO:0005869;dynactin complex;0.015564118075185!GO:0016301;kinase activity;0.0158795764972863!GO:0016481;negative regulation of transcription;0.0163762183993863!GO:0006984;ER-nuclear signaling pathway;0.0164512647480223!GO:0007264;small GTPase mediated signal transduction;0.0165489555275872!GO:0046164;alcohol catabolic process;0.0165489555275872!GO:0046983;protein dimerization activity;0.0166635447165786!GO:0006891;intra-Golgi vesicle-mediated transport;0.0170400523034904!GO:0000339;RNA cap binding;0.017502018868052!GO:0030119;AP-type membrane coat adaptor complex;0.0178040283928511!GO:0016835;carbon-oxygen lyase activity;0.0178040283928511!GO:0006631;fatty acid metabolic process;0.0181466663066688!GO:0003924;GTPase activity;0.01815268926662!GO:0043549;regulation of kinase activity;0.0183175364319746!GO:0008637;apoptotic mitochondrial changes;0.0186178058405909!GO:0004527;exonuclease activity;0.0187998255881195!GO:0009066;aspartate family amino acid metabolic process;0.0187998255881195!GO:0009308;amine metabolic process;0.0188937385642244!GO:0051540;metal cluster binding;0.0192423465450966!GO:0051536;iron-sulfur cluster binding;0.0192423465450966!GO:0043022;ribosome binding;0.0193745103290357!GO:0016197;endosome transport;0.0196985291300285!GO:0043596;nuclear replication fork;0.0197271118926387!GO:0006007;glucose catabolic process;0.0199213476482583!GO:0004300;enoyl-CoA hydratase activity;0.0203002238572259!GO:0043284;biopolymer biosynthetic process;0.0205104006011212!GO:0008250;oligosaccharyl transferase complex;0.0205357689347148!GO:0050178;phenylpyruvate tautomerase activity;0.0207877371432645!GO:0003746;translation elongation factor activity;0.0210269081600985!GO:0032981;mitochondrial respiratory chain complex I assembly;0.021309312159226!GO:0010257;NADH dehydrogenase complex assembly;0.021309312159226!GO:0033108;mitochondrial respiratory chain complex assembly;0.021309312159226!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0214595759214093!GO:0000428;DNA-directed RNA polymerase complex;0.0214595759214093!GO:0006635;fatty acid beta-oxidation;0.0215400674338137!GO:0030521;androgen receptor signaling pathway;0.0223123353891048!GO:0016407;acetyltransferase activity;0.0224423561892272!GO:0019320;hexose catabolic process;0.0224423561892272!GO:0006740;NADPH regeneration;0.0227366013076702!GO:0006098;pentose-phosphate shunt;0.0227366013076702!GO:0016746;transferase activity, transferring acyl groups;0.022753511565645!GO:0050790;regulation of catalytic activity;0.0228239886248468!GO:0048487;beta-tubulin binding;0.0231176493408871!GO:0044275;cellular carbohydrate catabolic process;0.0232577854623488!GO:0031570;DNA integrity checkpoint;0.0234009155787652!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0236398664818925!GO:0030131;clathrin adaptor complex;0.023818330243499!GO:0051539;4 iron, 4 sulfur cluster binding;0.0241925463396049!GO:0030508;thiol-disulfide exchange intermediate activity;0.0247376051296927!GO:0051651;maintenance of cellular localization;0.0247799643501725!GO:0015631;tubulin binding;0.0252536786721497!GO:0045947;negative regulation of translational initiation;0.0253107762349261!GO:0016272;prefoldin complex;0.0255189469900686!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0265254963414276!GO:0004680;casein kinase activity;0.0265254963414276!GO:0000118;histone deacetylase complex;0.0265254963414276!GO:0016836;hydro-lyase activity;0.0274504724243918!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0274804889333087!GO:0006376;mRNA splice site selection;0.0275263597409585!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0275263597409585!GO:0030140;trans-Golgi network transport vesicle;0.0277602485691757!GO:0006672;ceramide metabolic process;0.0277602485691757!GO:0030137;COPI-coated vesicle;0.0284824558348616!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0289366027729676!GO:0031902;late endosome membrane;0.029980744030564!GO:0048468;cell development;0.0305239969448055!GO:0005758;mitochondrial intermembrane space;0.0310819886454996!GO:0045859;regulation of protein kinase activity;0.0312029701756674!GO:0005784;translocon complex;0.0312230339806932!GO:0042393;histone binding;0.0312332757442249!GO:0009083;branched chain family amino acid catabolic process;0.0312332757442249!GO:0016829;lyase activity;0.0312961434670928!GO:0032561;guanyl ribonucleotide binding;0.0312961434670928!GO:0019001;guanyl nucleotide binding;0.0312961434670928!GO:0007017;microtubule-based process;0.0317828793401813!GO:0006596;polyamine biosynthetic process;0.0322702105555507!GO:0006497;protein amino acid lipidation;0.0326886780777992!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0329867887280254!GO:0006779;porphyrin biosynthetic process;0.033066533309876!GO:0033014;tetrapyrrole biosynthetic process;0.033066533309876!GO:0046966;thyroid hormone receptor binding;0.0332830393512918!GO:0004463;leukotriene-A4 hydrolase activity;0.0336589924290531!GO:0004301;epoxide hydrolase activity;0.0336589924290531!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0336818785343875!GO:0004197;cysteine-type endopeptidase activity;0.0344191751088706!GO:0016485;protein processing;0.0344191751088706!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0344191751088706!GO:0008097;5S rRNA binding;0.0352178741319013!GO:0045045;secretory pathway;0.0353109630071659!GO:0009451;RNA modification;0.0357405960993513!GO:0003711;transcription elongation regulator activity;0.0357857808702612!GO:0006378;mRNA polyadenylation;0.0360828299506294!GO:0031371;ubiquitin conjugating enzyme complex;0.036855673292336!GO:0016311;dephosphorylation;0.0370359232222226!GO:0045893;positive regulation of transcription, DNA-dependent;0.0372630173991924!GO:0004448;isocitrate dehydrogenase activity;0.0372630173991924!GO:0006778;porphyrin metabolic process;0.0375231448376641!GO:0033013;tetrapyrrole metabolic process;0.0375231448376641!GO:0032594;protein transport within lipid bilayer;0.0375742848052206!GO:0032907;transforming growth factor-beta3 production;0.0375742848052206!GO:0032596;protein transport into lipid raft;0.0375742848052206!GO:0032910;regulation of transforming growth factor-beta3 production;0.0375742848052206!GO:0032595;B cell receptor transport within lipid bilayer;0.0375742848052206!GO:0033606;chemokine receptor transport within lipid bilayer;0.0375742848052206!GO:0032600;chemokine receptor transport out of lipid raft;0.0375742848052206!GO:0032599;protein transport out of lipid raft;0.0375742848052206!GO:0032597;B cell receptor transport into lipid raft;0.0375742848052206!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0375742848052206!GO:0009067;aspartate family amino acid biosynthetic process;0.0376564030599612!GO:0031123;RNA 3'-end processing;0.0377374334994901!GO:0032200;telomere organization and biogenesis;0.0379157547641003!GO:0000723;telomere maintenance;0.0379157547641003!GO:0030145;manganese ion binding;0.0380953874697559!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0384203370315222!GO:0000209;protein polyubiquitination;0.0387306507079215!GO:0030911;TPR domain binding;0.0387306507079215!GO:0016251;general RNA polymerase II transcription factor activity;0.0387306507079215!GO:0004722;protein serine/threonine phosphatase activity;0.0388910256441743!GO:0008415;acyltransferase activity;0.0391171875256805!GO:0006509;membrane protein ectodomain proteolysis;0.0397335337365965!GO:0033619;membrane protein proteolysis;0.0397335337365965!GO:0006518;peptide metabolic process;0.0400470079670655!GO:0043189;H4/H2A histone acetyltransferase complex;0.0402710030083875!GO:0035267;NuA4 histone acetyltransferase complex;0.0403822998828289!GO:0042769;DNA damage response, detection of DNA damage;0.0403822998828289!GO:0005905;coated pit;0.040764507844777!GO:0031970;organelle envelope lumen;0.0410588057288697!GO:0016830;carbon-carbon lyase activity;0.0411304694214794!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.0411683873242666!GO:0031326;regulation of cellular biosynthetic process;0.0412934340803043!GO:0046519;sphingoid metabolic process;0.0414052465862923!GO:0007093;mitotic cell cycle checkpoint;0.0435901286433174!GO:0017134;fibroblast growth factor binding;0.0436885761508924!GO:0043154;negative regulation of caspase activity;0.04389510509757!GO:0006270;DNA replication initiation;0.0440918019929721!GO:0008538;proteasome activator activity;0.0447783706320626!GO:0005669;transcription factor TFIID complex;0.0449741264704523!GO:0006739;NADP metabolic process;0.0450429953190075!GO:0008203;cholesterol metabolic process;0.0452283811913233!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.045651447911188!GO:0004239;methionyl aminopeptidase activity;0.0471555508414011!GO:0000922;spindle pole;0.0473767158159834!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0482679602377657!GO:0046554;malate dehydrogenase (NADP+) activity;0.0496042665684788!GO:0006400;tRNA modification;0.0497603334800264!GO:0009303;rRNA transcription;0.0498596182211492!GO:0045941;positive regulation of transcription;0.0498620935169384!GO:0016783;sulfurtransferase activity;0.0499584972224185
|sample_id=10796
|sample_id=10796
|sample_note=
|sample_note=
Line 76: Line 101:
|sample_tissue=stomach
|sample_tissue=stomach
|top_motifs=ZEB1:2.47400392585;HNF4A_NR2F1,2:2.34888053219;HNF1A:2.28806688633;SNAI1..3:2.15221118992;HOX{A6,A7,B6,B7}:1.81456950948;LMO2:1.70765597196;VSX1,2:1.69825512537;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0166973959;NFY{A,B,C}:1.01097929983;ONECUT1,2:0.95233817632;ZNF148:0.890880623365;NR5A1,2:0.890773032726;RBPJ:0.88509657476;MYB:0.879544141167;CDX1,2,4:0.828567971028;ELK1,4_GABP{A,B1}:0.714969945247;E2F1..5:0.706814588843;XCPE1{core}:0.680258980624;ADNP_IRX_SIX_ZHX:0.643682476522;MYOD1:0.627074506715;FOXN1:0.598392142358;ESRRA:0.595828245718;FOXQ1:0.521597234206;POU6F1:0.509875426317;SP1:0.508025416508;PPARG:0.475357814087;PBX1:0.470007792587;RXRA_VDR{dimer}:0.453607490853;GATA6:0.452399946074;DBP:0.431573222839;IRF7:0.430868277974;PAX6:0.414902104966;ATF4:0.40854450089;ZNF143:0.400791246603;MTF1:0.399123347561;NRF1:0.396314846856;bHLH_family:0.394586475345;NR6A1:0.38630547349;BREu{core}:0.380704134191;IKZF1:0.376301280606;POU2F1..3:0.360159218327;FOX{F1,F2,J1}:0.358645161958;ATF5_CREB3:0.345489336756;GFI1:0.34399629714;PAX5:0.315618890565;RORA:0.304317697082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.297296074826;POU5F1:0.275400209276;FOX{I1,J2}:0.264755327254;NANOG:0.260881020262;RFX2..5_RFXANK_RFXAP:0.210824137297;OCT4_SOX2{dimer}:0.178327222144;TP53:0.174727135125;YY1:0.158780888397;HOX{A5,B5}:0.134424737772;TFDP1:0.132664706873;PAX2:0.120732659604;LEF1_TCF7_TCF7L1,2:0.115272120223;STAT1,3:0.0996441506567;ARID5B:0.0919390917398;ZNF423:0.0756242438156;PDX1:0.0748898039494;CRX:0.0742520165319;TLX1..3_NFIC{dimer}:0.048335180033;CEBPA,B_DDIT3:0.0368356206797;FOXM1:0.028703450981;HAND1,2:0.0244033049919;HIF1A:0.0227345881974;PAX1,9:-0.0298609117195;TBX4,5:-0.0317643018167;EBF1:-0.0323661443313;MTE{core}:-0.0327059211509;SOX2:-0.0673999283196;TFAP2B:-0.0852880974456;TEAD1:-0.106440101699;ZFP161:-0.109072927324;FOS_FOS{B,L1}_JUN{B,D}:-0.113797212531;IKZF2:-0.119005260008;FOXD3:-0.119832126835;ELF1,2,4:-0.139204610443;IRF1,2:-0.145740039814;FOX{D1,D2}:-0.146386463824;FOSL2:-0.147804652059;NKX6-1,2:-0.16860300639;MED-1{core}:-0.181293809141;NFE2:-0.197872065003;TFCP2:-0.210290527282;SOX{8,9,10}:-0.214133296154;NKX2-3_NKX2-5:-0.222480794908;BACH2:-0.245671764286;HLF:-0.288134709845;DMAP1_NCOR{1,2}_SMARC:-0.301312002521;CUX2:-0.307034976288;MEF2{A,B,C,D}:-0.317244079001;NHLH1,2:-0.318398901144;NFKB1_REL_RELA:-0.324008142934;HOX{A4,D4}:-0.328745703537;PAX4:-0.336608893272;TFAP2{A,C}:-0.345967542133;HIC1:-0.347450455282;PRRX1,2:-0.35408689639;STAT2,4,6:-0.357790441106;PAX3,7:-0.360530218565;NR1H4:-0.360688354548;ATF6:-0.374610903836;ZBTB6:-0.396587161704;NFE2L2:-0.399971600095;ZBTB16:-0.410446634163;TAL1_TCF{3,4,12}:-0.42687322024;TBP:-0.427682770897;HSF1,2:-0.437413461767;EN1,2:-0.441143882505;ETS1,2:-0.464433387707;TEF:-0.479834693509;RFX1:-0.484503678319;LHX3,4:-0.51463810619;GTF2A1,2:-0.529222180585;CREB1:-0.530069056944;AR:-0.531633772207;GCM1,2:-0.542448080145;NKX3-2:-0.544175226122;REST:-0.546533217079;SPI1:-0.563865266223;PITX1..3:-0.569555096601;FOXP3:-0.581312216123;SPIB:-0.583030744558;FOXL1:-0.590694699325;STAT5{A,B}:-0.603621152942;FOXA2:-0.606222583958;SREBF1,2:-0.62891971017;BPTF:-0.636689558617;MYBL2:-0.644969028669;ESR1:-0.662583243085;SOX17:-0.670599345444;T:-0.685169481657;UFEwm:-0.723254205323;EP300:-0.731376261895;KLF4:-0.734704992462;PAX8:-0.759850963548;RUNX1..3:-0.761486951301;POU3F1..4:-0.763146601596;EVI1:-0.763576171908;SOX5:-0.76396257649;GTF2I:-0.784368065037;HES1:-0.803445048484;NFIX:-0.803613234775;CDC5L:-0.8110583153;NKX2-1,4:-0.811316811236;NKX3-1:-0.842703285189;JUN:-0.852115727529;FOXO1,3,4:-0.864847536143;SRF:-0.881980779753;EGR1..3:-0.882174967129;AHR_ARNT_ARNT2:-0.890429954777;MYFfamily:-0.947360761359;NFIL3:-0.950913304806;HMX1:-0.951090358925;ATF2:-0.987381800456;NANOG{mouse}:-0.991397485045;HOXA9_MEIS1:-1.00934183631;TFAP4:-1.02492465758;MAZ:-1.04291595914;GFI1B:-1.04661411924;RREB1:-1.09880238836;GATA4:-1.10350295132;ZNF384:-1.10843429932;TLX2:-1.12025374178;FOXP1:-1.12503552644;ZIC1..3:-1.14681204112;SPZ1:-1.17477835908;PRDM1:-1.17561355289;HBP1_HMGB_SSRP1_UBTF:-1.18338855083;GZF1:-1.21124058355;POU1F1:-1.24170030319;PATZ1:-1.26279002229;ALX4:-1.28745916716;TOPORS:-1.29961272996;MAFB:-1.32089559521;NKX2-2,8:-1.33167947431;HMGA1,2:-1.36316040604;NFE2L1:-1.3672423535;NR3C1:-1.40847061231;TGIF1:-1.41413733723;AIRE:-1.50399482167;GLI1..3:-1.59096549041;ZNF238:-1.69122023404;ALX1:-1.69753204325;NFATC1..3:-1.71617691505;MZF1:-1.72984156472;XBP1:-2.11050338869;SMAD1..7,9:-2.13569454047;RXR{A,B,G}:-2.41163328779
|top_motifs=ZEB1:2.47400392585;HNF4A_NR2F1,2:2.34888053219;HNF1A:2.28806688633;SNAI1..3:2.15221118992;HOX{A6,A7,B6,B7}:1.81456950948;LMO2:1.70765597196;VSX1,2:1.69825512537;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0166973959;NFY{A,B,C}:1.01097929983;ONECUT1,2:0.95233817632;ZNF148:0.890880623365;NR5A1,2:0.890773032726;RBPJ:0.88509657476;MYB:0.879544141167;CDX1,2,4:0.828567971028;ELK1,4_GABP{A,B1}:0.714969945247;E2F1..5:0.706814588843;XCPE1{core}:0.680258980624;ADNP_IRX_SIX_ZHX:0.643682476522;MYOD1:0.627074506715;FOXN1:0.598392142358;ESRRA:0.595828245718;FOXQ1:0.521597234206;POU6F1:0.509875426317;SP1:0.508025416508;PPARG:0.475357814087;PBX1:0.470007792587;RXRA_VDR{dimer}:0.453607490853;GATA6:0.452399946074;DBP:0.431573222839;IRF7:0.430868277974;PAX6:0.414902104966;ATF4:0.40854450089;ZNF143:0.400791246603;MTF1:0.399123347561;NRF1:0.396314846856;bHLH_family:0.394586475345;NR6A1:0.38630547349;BREu{core}:0.380704134191;IKZF1:0.376301280606;POU2F1..3:0.360159218327;FOX{F1,F2,J1}:0.358645161958;ATF5_CREB3:0.345489336756;GFI1:0.34399629714;PAX5:0.315618890565;RORA:0.304317697082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.297296074826;POU5F1:0.275400209276;FOX{I1,J2}:0.264755327254;NANOG:0.260881020262;RFX2..5_RFXANK_RFXAP:0.210824137297;OCT4_SOX2{dimer}:0.178327222144;TP53:0.174727135125;YY1:0.158780888397;HOX{A5,B5}:0.134424737772;TFDP1:0.132664706873;PAX2:0.120732659604;LEF1_TCF7_TCF7L1,2:0.115272120223;STAT1,3:0.0996441506567;ARID5B:0.0919390917398;ZNF423:0.0756242438156;PDX1:0.0748898039494;CRX:0.0742520165319;TLX1..3_NFIC{dimer}:0.048335180033;CEBPA,B_DDIT3:0.0368356206797;FOXM1:0.028703450981;HAND1,2:0.0244033049919;HIF1A:0.0227345881974;PAX1,9:-0.0298609117195;TBX4,5:-0.0317643018167;EBF1:-0.0323661443313;MTE{core}:-0.0327059211509;SOX2:-0.0673999283196;TFAP2B:-0.0852880974456;TEAD1:-0.106440101699;ZFP161:-0.109072927324;FOS_FOS{B,L1}_JUN{B,D}:-0.113797212531;IKZF2:-0.119005260008;FOXD3:-0.119832126835;ELF1,2,4:-0.139204610443;IRF1,2:-0.145740039814;FOX{D1,D2}:-0.146386463824;FOSL2:-0.147804652059;NKX6-1,2:-0.16860300639;MED-1{core}:-0.181293809141;NFE2:-0.197872065003;TFCP2:-0.210290527282;SOX{8,9,10}:-0.214133296154;NKX2-3_NKX2-5:-0.222480794908;BACH2:-0.245671764286;HLF:-0.288134709845;DMAP1_NCOR{1,2}_SMARC:-0.301312002521;CUX2:-0.307034976288;MEF2{A,B,C,D}:-0.317244079001;NHLH1,2:-0.318398901144;NFKB1_REL_RELA:-0.324008142934;HOX{A4,D4}:-0.328745703537;PAX4:-0.336608893272;TFAP2{A,C}:-0.345967542133;HIC1:-0.347450455282;PRRX1,2:-0.35408689639;STAT2,4,6:-0.357790441106;PAX3,7:-0.360530218565;NR1H4:-0.360688354548;ATF6:-0.374610903836;ZBTB6:-0.396587161704;NFE2L2:-0.399971600095;ZBTB16:-0.410446634163;TAL1_TCF{3,4,12}:-0.42687322024;TBP:-0.427682770897;HSF1,2:-0.437413461767;EN1,2:-0.441143882505;ETS1,2:-0.464433387707;TEF:-0.479834693509;RFX1:-0.484503678319;LHX3,4:-0.51463810619;GTF2A1,2:-0.529222180585;CREB1:-0.530069056944;AR:-0.531633772207;GCM1,2:-0.542448080145;NKX3-2:-0.544175226122;REST:-0.546533217079;SPI1:-0.563865266223;PITX1..3:-0.569555096601;FOXP3:-0.581312216123;SPIB:-0.583030744558;FOXL1:-0.590694699325;STAT5{A,B}:-0.603621152942;FOXA2:-0.606222583958;SREBF1,2:-0.62891971017;BPTF:-0.636689558617;MYBL2:-0.644969028669;ESR1:-0.662583243085;SOX17:-0.670599345444;T:-0.685169481657;UFEwm:-0.723254205323;EP300:-0.731376261895;KLF4:-0.734704992462;PAX8:-0.759850963548;RUNX1..3:-0.761486951301;POU3F1..4:-0.763146601596;EVI1:-0.763576171908;SOX5:-0.76396257649;GTF2I:-0.784368065037;HES1:-0.803445048484;NFIX:-0.803613234775;CDC5L:-0.8110583153;NKX2-1,4:-0.811316811236;NKX3-1:-0.842703285189;JUN:-0.852115727529;FOXO1,3,4:-0.864847536143;SRF:-0.881980779753;EGR1..3:-0.882174967129;AHR_ARNT_ARNT2:-0.890429954777;MYFfamily:-0.947360761359;NFIL3:-0.950913304806;HMX1:-0.951090358925;ATF2:-0.987381800456;NANOG{mouse}:-0.991397485045;HOXA9_MEIS1:-1.00934183631;TFAP4:-1.02492465758;MAZ:-1.04291595914;GFI1B:-1.04661411924;RREB1:-1.09880238836;GATA4:-1.10350295132;ZNF384:-1.10843429932;TLX2:-1.12025374178;FOXP1:-1.12503552644;ZIC1..3:-1.14681204112;SPZ1:-1.17477835908;PRDM1:-1.17561355289;HBP1_HMGB_SSRP1_UBTF:-1.18338855083;GZF1:-1.21124058355;POU1F1:-1.24170030319;PATZ1:-1.26279002229;ALX4:-1.28745916716;TOPORS:-1.29961272996;MAFB:-1.32089559521;NKX2-2,8:-1.33167947431;HMGA1,2:-1.36316040604;NFE2L1:-1.3672423535;NR3C1:-1.40847061231;TGIF1:-1.41413733723;AIRE:-1.50399482167;GLI1..3:-1.59096549041;ZNF238:-1.69122023404;ALX1:-1.69753204325;NFATC1..3:-1.71617691505;MZF1:-1.72984156472;XBP1:-2.11050338869;SMAD1..7,9:-2.13569454047;RXR{A,B,G}:-2.41163328779
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10796-110I4;search_select_hide=table117:FF:10796-110I4
}}
}}

Latest revision as of 15:05, 3 June 2020

Name:adenocarcinoma cell line:IM95m
Species:Human (Homo sapiens)
Library ID:CNhs11882
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexmale
age63
cell typeunclassifiable
cell lineIM95m
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005010
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11882 CAGE DRX007822 DRR008694
Accession ID Hg19

Library idBAMCTSS
CNhs11882 DRZ000119 DRZ001504
Accession ID Hg38

Library idBAMCTSS
CNhs11882 DRZ011469 DRZ012854
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005010
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10085 RNA-Seq DRX057142 DRR062901
Accession ID Hg19

Library idBAMCTSS
RDhi10085 DRZ007977


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
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C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11882

Jaspar motifP-value
MA0002.20.0374
MA0003.10.915
MA0004.10.111
MA0006.10.231
MA0007.10.0908
MA0009.10.00508
MA0014.10.00901
MA0017.13.24118e-6
MA0018.20.875
MA0019.10.383
MA0024.17.29391e-4
MA0025.10.509
MA0027.10.949
MA0028.14.21083e-4
MA0029.10.0277
MA0030.10.162
MA0031.10.158
MA0035.20.00122
MA0038.13.70686e-4
MA0039.28.94006e-4
MA0040.10.428
MA0041.10.32
MA0042.10.582
MA0043.10.706
MA0046.11.00915e-52
MA0047.23.00636e-4
MA0048.10.25
MA0050.10.0645
MA0051.10.0207
MA0052.10.5
MA0055.10.00472
MA0057.10.227
MA0058.10.139
MA0059.10.0349
MA0060.13.87673e-14
MA0061.10.00114
MA0062.21.28638e-4
MA0065.21.49346e-4
MA0066.10.29
MA0067.10.834
MA0068.17.4824e-4
MA0069.10.167
MA0070.10.151
MA0071.10.447
MA0072.10.0588
MA0073.10.519
MA0074.10.774
MA0076.10.00858
MA0077.10.84
MA0078.10.145
MA0079.20.226
MA0080.20.0817
MA0081.10.075
MA0083.10.169
MA0084.10.0668
MA0087.10.717
MA0088.10.0625
MA0090.10.8
MA0091.10.0167
MA0092.10.157
MA0093.10.0766
MA0099.20.294
MA0100.10.332
MA0101.10.321
MA0102.20.313
MA0103.18.43422e-9
MA0104.20.0064
MA0105.15.71845e-6
MA0106.10.502
MA0107.10.0389
MA0108.20.627
MA0111.10.867
MA0112.20.51
MA0113.10.789
MA0114.11.10236e-12
MA0115.12.67238e-4
MA0116.10.0697
MA0117.10.88
MA0119.10.494
MA0122.10.435
MA0124.10.418
MA0125.10.0971
MA0131.10.662
MA0135.10.216
MA0136.10.755
MA0137.20.0966
MA0138.20.695
MA0139.10.194
MA0140.10.0116
MA0141.10.0503
MA0142.10.201
MA0143.10.905
MA0144.10.117
MA0145.10.291
MA0146.10.00887
MA0147.10.00976
MA0148.10.00111
MA0149.10.0497
MA0150.10.182
MA0152.10.0589
MA0153.11.4395e-22
MA0154.19.29542e-4
MA0155.10.231
MA0156.10.507
MA0157.10.539
MA0159.10.637
MA0160.10.0869
MA0162.10.745
MA0163.10.105
MA0164.10.053
MA0258.10.797
MA0259.10.191



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11882

Novel motifP-value
10.86
100.95
1000.896
1010.376
1020.909
1030.67
1040.717
1050.279
1060.0726
1070.395
1080.505
1090.104
110.722
1100.735
1110.9
1120.467
1130.00944
1140.746
1150.624
1160.105
1170.65
1180.297
1190.55
120.877
1200.961
1210.732
1220.274
1230.0848
1240.142
1250.159
1260.126
1270.253
1280.0565
1290.505
130.0138
1300.241
1310.00541
1320.0574
1330.106
1340.0284
1350.0954
1360.00627
1370.494
1380.35
1390.313
140.888
1400.829
1410.659
1420.967
1430.0829
1440.154
1450.179
1460.539
1470.306
1480.798
1490.47
150.89
1500.678
1510.891
1520.848
1530.533
1540.79
1550.12
1560.423
1570.532
1580.934
1590.881
160.824
1600.661
1610.516
1620.351
1630.66
1640.371
1650.655
1660.564
1670.662
1680.538
1690.44
170.679
180.0672
190.303
20.823
200.553
210.68
220.673
230.0637
240.52
250.843
260.0147
270.645
280.527
290.413
30.535
300.277
310.841
320.0869
330.356
340.426
350.0198
360.436
370.346
380.264
390.836
40.792
400.164
410.115
420.988
430.497
440.505
450.852
460.456
470.981
480.993
490.257
50.547
500.705
510.851
520.485
530.273
540.837
550.552
560.77
570.448
580.511
590.286
60.279
600.92
610.135
620.866
630.841
640.653
650.528
660.00995
670.658
680.0394
690.73
70.124
700.141
710.632
720.91
730.246
740.113
750.894
760.286
770.764
780.0264
790.0124
80.57
800.369
810.181
823.79037e-5
830.719
840.199
850.202
860.873
870.0181
880.354
890.73
90.303
900.241
910.0129
920.154
930.756
940.0535
950.0336
960.343
970.805
980.467
990.659



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11882


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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