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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00004858
|accession_numbers=CAGE;DRX008698;DRR009570;DRZ000995;DRZ002380;DRZ012345;DRZ013730
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Line 35: Line 41:
|fonse_treatment_closure=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pancreas%252c%2520adult%252c%2520donor1.CNhs11756.10049-101G4.hg38.nobarcode.bam
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|id=FF:10049-101G4
|id=FF:10049-101G4
|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010049
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|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10049
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10049
|name=pancreas, adult, donor1
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|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
|profile_cagescan=,,,
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|rna_box=101
|rna_box=101
|rna_catalog_number=Cat:636577
|rna_catalog_number=Cat:636577
Line 57: Line 78:
|rna_weight_ug=50
|rna_weight_ug=50
|sample_age=
|sample_age=
|sample_category=tissues
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|sample_cell_line=
Line 69: Line 91:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.66839362711528e-231!GO:0005737;cytoplasm;5.21258545493855e-192!GO:0044444;cytoplasmic part;1.80560893385855e-156!GO:0043231;intracellular membrane-bound organelle;6.32148634356036e-140!GO:0043227;membrane-bound organelle;7.55320178926263e-140!GO:0043226;organelle;4.82810792861885e-139!GO:0043229;intracellular organelle;7.86173574146745e-139!GO:0044422;organelle part;2.84258492422098e-101!GO:0044446;intracellular organelle part;1.36488851608511e-99!GO:0005739;mitochondrion;2.25432732238779e-73!GO:0044237;cellular metabolic process;1.42495878637105e-69!GO:0032991;macromolecular complex;4.02250213670941e-69!GO:0030529;ribonucleoprotein complex;4.37878384146713e-69!GO:0044238;primary metabolic process;2.91368777078184e-68!GO:0031090;organelle membrane;4.16687698581787e-60!GO:0043233;organelle lumen;6.04518611226902e-59!GO:0031974;membrane-enclosed lumen;6.04518611226902e-59!GO:0005515;protein binding;1.20426392096837e-58!GO:0043170;macromolecule metabolic process;6.42093693921691e-56!GO:0003723;RNA binding;1.44490023008148e-55!GO:0019538;protein metabolic process;2.67101381883649e-54!GO:0044260;cellular macromolecule metabolic process;6.40879189393753e-50!GO:0005840;ribosome;1.21899832097891e-49!GO:0044267;cellular protein metabolic process;1.57631304413883e-49!GO:0044429;mitochondrial part;3.19740600394469e-48!GO:0006412;translation;1.38424384595374e-45!GO:0044428;nuclear part;5.09655211551195e-44!GO:0033036;macromolecule localization;9.41820284695443e-44!GO:0003735;structural constituent of ribosome;3.74703264505949e-43!GO:0015031;protein transport;2.99033251985824e-42!GO:0008104;protein localization;7.54386453101163e-42!GO:0045184;establishment of protein localization;1.75042494548874e-41!GO:0009058;biosynthetic process;1.78905829666945e-41!GO:0009059;macromolecule biosynthetic process;9.61914987384869e-41!GO:0031967;organelle envelope;1.3269356851786e-38!GO:0031975;envelope;2.31642649051825e-38!GO:0044249;cellular biosynthetic process;2.11110842747302e-36!GO:0033279;ribosomal subunit;3.82609566748046e-36!GO:0006396;RNA processing;1.17835864348613e-33!GO:0043234;protein complex;5.93917511355376e-33!GO:0005829;cytosol;5.46392593832531e-32!GO:0016043;cellular component organization and biogenesis;5.57657666643349e-32!GO:0019866;organelle inner membrane;4.76807699688701e-30!GO:0005740;mitochondrial envelope;1.17338569008399e-29!GO:0005743;mitochondrial inner membrane;7.80747087730402e-29!GO:0031981;nuclear lumen;1.49297717808358e-28!GO:0031966;mitochondrial membrane;1.52868020077402e-28!GO:0016071;mRNA metabolic process;2.78924877464525e-28!GO:0046907;intracellular transport;7.31258717665344e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.93788098516456e-27!GO:0006886;intracellular protein transport;1.2728726366917e-26!GO:0012505;endomembrane system;3.1936904159631e-26!GO:0005634;nucleus;6.20215614985016e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.12205997630501e-26!GO:0005783;endoplasmic reticulum;6.7254418250398e-25!GO:0008380;RNA splicing;1.59019266649842e-23!GO:0006397;mRNA processing;3.70738616214587e-23!GO:0031980;mitochondrial lumen;7.09693132811784e-23!GO:0005759;mitochondrial matrix;7.09693132811784e-23!GO:0005794;Golgi apparatus;2.56932180225296e-22!GO:0065003;macromolecular complex assembly;7.27931135866336e-22!GO:0010467;gene expression;1.1375808317689e-21!GO:0043283;biopolymer metabolic process;2.45779156330955e-21!GO:0006119;oxidative phosphorylation;3.65952439747966e-21!GO:0051641;cellular localization;1.27738413021576e-20!GO:0051649;establishment of cellular localization;5.42346169272529e-20!GO:0015935;small ribosomal subunit;9.56516180463313e-20!GO:0044432;endoplasmic reticulum part;1.49955929720837e-19!GO:0022607;cellular component assembly;6.32994779584485e-19!GO:0044445;cytosolic part;6.32994779584485e-19!GO:0044455;mitochondrial membrane part;1.44429343158504e-18!GO:0006457;protein folding;1.98151123449852e-18!GO:0015934;large ribosomal subunit;1.66231418991234e-17!GO:0005654;nucleoplasm;1.73940559079578e-17!GO:0022618;protein-RNA complex assembly;4.87056417407816e-17!GO:0005746;mitochondrial respiratory chain;8.08860854034615e-17!GO:0005681;spliceosome;8.30701595667476e-17!GO:0016192;vesicle-mediated transport;1.09337237575894e-16!GO:0048770;pigment granule;1.07422186792735e-15!GO:0042470;melanosome;1.07422186792735e-15!GO:0044248;cellular catabolic process;1.16692600552382e-15!GO:0016874;ligase activity;1.61661625498794e-15!GO:0051186;cofactor metabolic process;2.32696460503046e-15!GO:0044451;nucleoplasm part;3.358055189839e-15!GO:0043285;biopolymer catabolic process;3.69674570071791e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.37893370352414e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.660422421701e-15!GO:0050136;NADH dehydrogenase (quinone) activity;6.56272465992658e-15!GO:0003954;NADH dehydrogenase activity;6.56272465992658e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.56272465992658e-15!GO:0044265;cellular macromolecule catabolic process;1.36481617055786e-14!GO:0043412;biopolymer modification;1.4436217271905e-14!GO:0008135;translation factor activity, nucleic acid binding;2.29851266574667e-14!GO:0048193;Golgi vesicle transport;2.97896831766685e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.28998880117014e-14!GO:0044257;cellular protein catabolic process;4.14878719916378e-14!GO:0005789;endoplasmic reticulum membrane;4.45308795808834e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;8.94775943880169e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.19358099359511e-13!GO:0019941;modification-dependent protein catabolic process;1.41789276533191e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.41789276533191e-13!GO:0006512;ubiquitin cycle;1.63343953090041e-13!GO:0006464;protein modification process;1.65465696554532e-13!GO:0051082;unfolded protein binding;1.65465696554532e-13!GO:0009057;macromolecule catabolic process;1.65465696554532e-13!GO:0030163;protein catabolic process;2.35266402295703e-13!GO:0031982;vesicle;4.24596715078422e-13!GO:0005793;ER-Golgi intermediate compartment;4.37865845276354e-13!GO:0005730;nucleolus;5.14910332260166e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.67783721602506e-13!GO:0006996;organelle organization and biogenesis;6.7156907677974e-13!GO:0031410;cytoplasmic vesicle;6.90126876527027e-13!GO:0030964;NADH dehydrogenase complex (quinone);6.90126876527027e-13!GO:0045271;respiratory chain complex I;6.90126876527027e-13!GO:0005747;mitochondrial respiratory chain complex I;6.90126876527027e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.47597260151573e-13!GO:0042773;ATP synthesis coupled electron transport;8.47597260151573e-13!GO:0008134;transcription factor binding;1.2916707109099e-12!GO:0005761;mitochondrial ribosome;1.79357355789782e-12!GO:0000313;organellar ribosome;1.79357355789782e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.04582699123285e-12!GO:0009056;catabolic process;2.06967510911574e-12!GO:0006732;coenzyme metabolic process;2.87136955663957e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.96855825045738e-12!GO:0006413;translational initiation;6.1070645334774e-12!GO:0009055;electron carrier activity;6.29218760228412e-12!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.4931921916791e-12!GO:0000502;proteasome complex (sensu Eukaryota);8.85533605059176e-12!GO:0000166;nucleotide binding;9.83617683882114e-12!GO:0006605;protein targeting;1.95005504644553e-11!GO:0006446;regulation of translational initiation;2.60516383134849e-11!GO:0031988;membrane-bound vesicle;5.3197647162166e-11!GO:0016462;pyrophosphatase activity;6.34904477452099e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.8094575627949e-11!GO:0003743;translation initiation factor activity;6.84771579902489e-11!GO:0016023;cytoplasmic membrane-bound vesicle;9.05961676079727e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;1.09272138299869e-10!GO:0043687;post-translational protein modification;5.13457564501254e-10!GO:0008565;protein transporter activity;5.35037431074786e-10!GO:0017111;nucleoside-triphosphatase activity;6.37084649760186e-10!GO:0043228;non-membrane-bound organelle;7.60373748928687e-10!GO:0043232;intracellular non-membrane-bound organelle;7.60373748928687e-10!GO:0005635;nuclear envelope;1.09040794889096e-09!GO:0042254;ribosome biogenesis and assembly;1.39370859110985e-09!GO:0044431;Golgi apparatus part;2.63955501221297e-09!GO:0005773;vacuole;3.67420517088487e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.9292270288241e-09!GO:0009060;aerobic respiration;5.53850498751512e-09!GO:0031965;nuclear membrane;5.71860823935732e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.09378732530091e-09!GO:0000375;RNA splicing, via transesterification reactions;8.09378732530091e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.09378732530091e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.83432591810519e-08!GO:0016604;nuclear body;2.53327190752884e-08!GO:0045333;cellular respiration;3.62713062223098e-08!GO:0008639;small protein conjugating enzyme activity;3.76581061061399e-08!GO:0012501;programmed cell death;3.76581061061399e-08!GO:0017076;purine nucleotide binding;4.01064347825792e-08!GO:0019829;cation-transporting ATPase activity;4.0436956566987e-08!GO:0006915;apoptosis;4.29414150390828e-08!GO:0006461;protein complex assembly;4.83637735196452e-08!GO:0051187;cofactor catabolic process;5.8448209028461e-08!GO:0006888;ER to Golgi vesicle-mediated transport;6.37612889760542e-08!GO:0000323;lytic vacuole;8.58210469694085e-08!GO:0005764;lysosome;8.58210469694085e-08!GO:0004842;ubiquitin-protein ligase activity;9.36886468922025e-08!GO:0006163;purine nucleotide metabolic process;1.01574762679193e-07!GO:0009259;ribonucleotide metabolic process;1.03568833029227e-07!GO:0015986;ATP synthesis coupled proton transport;1.15013385915645e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.15013385915645e-07!GO:0005768;endosome;1.23296316526986e-07!GO:0003712;transcription cofactor activity;1.39849627393497e-07!GO:0009109;coenzyme catabolic process;1.42503509314255e-07!GO:0008219;cell death;1.63050878885602e-07!GO:0016265;death;1.63050878885602e-07!GO:0032553;ribonucleotide binding;1.75658997031376e-07!GO:0032555;purine ribonucleotide binding;1.75658997031376e-07!GO:0000139;Golgi membrane;1.75658997031376e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.92765282573439e-07!GO:0016491;oxidoreductase activity;2.5072258087757e-07!GO:0030120;vesicle coat;2.57505871004228e-07!GO:0030662;coated vesicle membrane;2.57505871004228e-07!GO:0009150;purine ribonucleotide metabolic process;2.65769683120166e-07!GO:0019787;small conjugating protein ligase activity;2.870566704939e-07!GO:0006399;tRNA metabolic process;2.90803625804933e-07!GO:0009141;nucleoside triphosphate metabolic process;3.24052796012717e-07!GO:0005788;endoplasmic reticulum lumen;3.539098175409e-07!GO:0016607;nuclear speck;3.61495434948518e-07!GO:0006099;tricarboxylic acid cycle;5.03261844736308e-07!GO:0046356;acetyl-CoA catabolic process;5.03261844736308e-07!GO:0048475;coated membrane;5.97153087627893e-07!GO:0030117;membrane coat;5.97153087627893e-07!GO:0044453;nuclear membrane part;6.12107670070889e-07!GO:0006164;purine nucleotide biosynthetic process;6.76777869219824e-07!GO:0006084;acetyl-CoA metabolic process;6.97390172310357e-07!GO:0006913;nucleocytoplasmic transport;6.97390172310357e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.18013977246224e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.18013977246224e-07!GO:0051188;cofactor biosynthetic process;7.18013977246224e-07!GO:0009199;ribonucleoside triphosphate metabolic process;8.53615358406638e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;8.73046646114723e-07!GO:0004812;aminoacyl-tRNA ligase activity;8.73046646114723e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;8.73046646114723e-07!GO:0017038;protein import;9.15086208181066e-07!GO:0015078;hydrogen ion transmembrane transporter activity;9.83752547999318e-07!GO:0051169;nuclear transport;1.26151432787058e-06!GO:0006082;organic acid metabolic process;1.29666728381625e-06!GO:0016787;hydrolase activity;1.30912703995387e-06!GO:0046034;ATP metabolic process;1.41547588214578e-06!GO:0009260;ribonucleotide biosynthetic process;1.46418757598709e-06!GO:0019752;carboxylic acid metabolic process;1.4990929610139e-06!GO:0030554;adenyl nucleotide binding;1.6981663209781e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.71268092483831e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.71268092483831e-06!GO:0016740;transferase activity;1.76245316668089e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.77456301816874e-06!GO:0051789;response to protein stimulus;1.90551748236022e-06!GO:0006986;response to unfolded protein;1.90551748236022e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.08221881554966e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.08221881554966e-06!GO:0006754;ATP biosynthetic process;2.67607893567865e-06!GO:0006753;nucleoside phosphate metabolic process;2.67607893567865e-06!GO:0043038;amino acid activation;2.69691197399195e-06!GO:0006418;tRNA aminoacylation for protein translation;2.69691197399195e-06!GO:0043039;tRNA aminoacylation;2.69691197399195e-06!GO:0065002;intracellular protein transport across a membrane;2.71726870755571e-06!GO:0005770;late endosome;2.78194084869768e-06!GO:0016887;ATPase activity;2.79192820545956e-06!GO:0003676;nucleic acid binding;3.19039088466287e-06!GO:0016881;acid-amino acid ligase activity;3.45457986035655e-06!GO:0016070;RNA metabolic process;3.73921858908826e-06!GO:0045259;proton-transporting ATP synthase complex;3.80460744633864e-06!GO:0042623;ATPase activity, coupled;4.17248523075849e-06!GO:0006091;generation of precursor metabolites and energy;4.21161695478959e-06!GO:0006752;group transfer coenzyme metabolic process;4.72628621191795e-06!GO:0005524;ATP binding;5.14714004702944e-06!GO:0005643;nuclear pore;5.23547341292732e-06!GO:0006793;phosphorus metabolic process;5.39959618069525e-06!GO:0006796;phosphate metabolic process;5.39959618069525e-06!GO:0032559;adenyl ribonucleotide binding;5.66733574770054e-06!GO:0006364;rRNA processing;7.80983594553921e-06!GO:0051246;regulation of protein metabolic process;7.97686835941666e-06!GO:0006613;cotranslational protein targeting to membrane;8.76676186576088e-06!GO:0046930;pore complex;8.76715291799155e-06!GO:0031252;leading edge;9.04830274914425e-06!GO:0009108;coenzyme biosynthetic process;9.35168314735002e-06!GO:0016072;rRNA metabolic process;1.00602852489009e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.0060325231094e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.20581804678099e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.25417833079999e-05!GO:0048523;negative regulation of cellular process;1.59874221014347e-05!GO:0006259;DNA metabolic process;1.95319225849606e-05!GO:0006366;transcription from RNA polymerase II promoter;2.06944192872445e-05!GO:0008026;ATP-dependent helicase activity;3.49610098691373e-05!GO:0003714;transcription corepressor activity;3.49636664473167e-05!GO:0016853;isomerase activity;4.1108321525263e-05!GO:0045045;secretory pathway;4.21891471358279e-05!GO:0005839;proteasome core complex (sensu Eukaryota);4.54598399648947e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.85405054352476e-05!GO:0008654;phospholipid biosynthetic process;4.88201643319516e-05!GO:0000151;ubiquitin ligase complex;5.07858428783019e-05!GO:0019843;rRNA binding;5.36880432124516e-05!GO:0033116;ER-Golgi intermediate compartment membrane;5.43313560325722e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.98478273537447e-05!GO:0045454;cell redox homeostasis;6.15330216362494e-05!GO:0044440;endosomal part;6.36015880159059e-05!GO:0010008;endosome membrane;6.36015880159059e-05!GO:0032446;protein modification by small protein conjugation;6.40217114687042e-05!GO:0016310;phosphorylation;6.6182503816973e-05!GO:0005762;mitochondrial large ribosomal subunit;6.63341554415523e-05!GO:0000315;organellar large ribosomal subunit;6.63341554415523e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.25807679271531e-05!GO:0000245;spliceosome assembly;7.30139505187849e-05!GO:0007264;small GTPase mediated signal transduction;7.62518096885005e-05!GO:0050662;coenzyme binding;0.000100580903544644!GO:0004386;helicase activity;0.000105246345708108!GO:0005798;Golgi-associated vesicle;0.000110497118334697!GO:0030659;cytoplasmic vesicle membrane;0.000110525614483611!GO:0050657;nucleic acid transport;0.000111085362063731!GO:0051236;establishment of RNA localization;0.000111085362063731!GO:0050658;RNA transport;0.000111085362063731!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000121536001794674!GO:0016567;protein ubiquitination;0.000127798528616937!GO:0006612;protein targeting to membrane;0.000130609020068164!GO:0016564;transcription repressor activity;0.000135293395888112!GO:0016568;chromatin modification;0.000140984876600666!GO:0006403;RNA localization;0.000143506757106275!GO:0032940;secretion by cell;0.000148482192888413!GO:0009117;nucleotide metabolic process;0.000151389518405528!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000171408513087708!GO:0004576;oligosaccharyl transferase activity;0.000184506359955589!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.000186520705442105!GO:0004298;threonine endopeptidase activity;0.000200789330540984!GO:0030133;transport vesicle;0.000206101953327903!GO:0007005;mitochondrion organization and biogenesis;0.000218149046219563!GO:0048037;cofactor binding;0.000235197581259656!GO:0000314;organellar small ribosomal subunit;0.00025439685579316!GO:0005763;mitochondrial small ribosomal subunit;0.00025439685579316!GO:0048471;perinuclear region of cytoplasm;0.000255945904325465!GO:0044433;cytoplasmic vesicle part;0.000258096903003402!GO:0005905;coated pit;0.000270507554110653!GO:0019899;enzyme binding;0.000273588399496585!GO:0009081;branched chain family amino acid metabolic process;0.00027614423661432!GO:0016044;membrane organization and biogenesis;0.000328771110335257!GO:0043623;cellular protein complex assembly;0.000333126617305729!GO:0012506;vesicle membrane;0.000336621498871166!GO:0048519;negative regulation of biological process;0.000346892331787227!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000352188420327084!GO:0044262;cellular carbohydrate metabolic process;0.00037283956982753!GO:0043069;negative regulation of programmed cell death;0.000375912905082581!GO:0030176;integral to endoplasmic reticulum membrane;0.000392410093031162!GO:0030867;rough endoplasmic reticulum membrane;0.000396020914650052!GO:0043066;negative regulation of apoptosis;0.000398812307708612!GO:0008250;oligosaccharyl transferase complex;0.000410275874885754!GO:0005791;rough endoplasmic reticulum;0.000416070824451169!GO:0005667;transcription factor complex;0.00044309500149834!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000454208865142452!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000459202939032565!GO:0006891;intra-Golgi vesicle-mediated transport;0.000479965237726496!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000539296709890058!GO:0003724;RNA helicase activity;0.000611066070311821!GO:0042981;regulation of apoptosis;0.000620334362942459!GO:0007243;protein kinase cascade;0.000638790361152943!GO:0006606;protein import into nucleus;0.000699996789303507!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000710995504175057!GO:0043681;protein import into mitochondrion;0.000710995504175057!GO:0043021;ribonucleoprotein binding;0.000732147035335818!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00073720626382064!GO:0015399;primary active transmembrane transporter activity;0.00073720626382064!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0007461717800963!GO:0003756;protein disulfide isomerase activity;0.000754970413272432!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.000754970413272432!GO:0051170;nuclear import;0.000774132329555962!GO:0051028;mRNA transport;0.00084345752205295!GO:0007265;Ras protein signal transduction;0.00084345752205295!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000854089952332152!GO:0031324;negative regulation of cellular metabolic process;0.000862480611796386!GO:0016779;nucleotidyltransferase activity;0.000862480611796386!GO:0005774;vacuolar membrane;0.000868401837061387!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000869345512465196!GO:0043067;regulation of programmed cell death;0.000874250588309558!GO:0046474;glycerophospholipid biosynthetic process;0.000900179366348942!GO:0008092;cytoskeletal protein binding;0.000929554871208019!GO:0006323;DNA packaging;0.000964289507066984!GO:0030036;actin cytoskeleton organization and biogenesis;0.00105353661317938!GO:0030433;ER-associated protein catabolic process;0.00109593681432851!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00109593681432851!GO:0051920;peroxiredoxin activity;0.00112264560104835!GO:0016859;cis-trans isomerase activity;0.00113147570716298!GO:0051287;NAD binding;0.00113417597092237!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116404215024563!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116404215024563!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116404215024563!GO:0043566;structure-specific DNA binding;0.00122268690832875!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00122820677787095!GO:0031072;heat shock protein binding;0.00125791255054242!GO:0005048;signal sequence binding;0.00132507399024971!GO:0045947;negative regulation of translational initiation;0.00140596977026907!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00143594608887722!GO:0018196;peptidyl-asparagine modification;0.00154125266847371!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00154125266847371!GO:0005769;early endosome;0.00161596297401229!GO:0001726;ruffle;0.00164169720561022!GO:0022890;inorganic cation transmembrane transporter activity;0.00168173506739303!GO:0006650;glycerophospholipid metabolic process;0.00186228710188916!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00186228710188916!GO:0005525;GTP binding;0.0018735734212852!GO:0048500;signal recognition particle;0.00187865112478855!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00196562731211211!GO:0006984;ER-nuclear signaling pathway;0.00196562731211211!GO:0016485;protein processing;0.00205209842340844!GO:0006916;anti-apoptosis;0.00207594742421879!GO:0051427;hormone receptor binding;0.00219326430191359!GO:0003713;transcription coactivator activity;0.00226618559806287!GO:0006402;mRNA catabolic process;0.00233379559611357!GO:0006520;amino acid metabolic process;0.0023967095063262!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00240234702796715!GO:0030658;transport vesicle membrane;0.0026784923949022!GO:0016563;transcription activator activity;0.00269941836271959!GO:0006487;protein amino acid N-linked glycosylation;0.00273949318333822!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.002945904070993!GO:0003924;GTPase activity;0.00296685332360338!GO:0030134;ER to Golgi transport vesicle;0.00298677531733201!GO:0044437;vacuolar part;0.00305791531650227!GO:0003899;DNA-directed RNA polymerase activity;0.00310045556795759!GO:0009892;negative regulation of metabolic process;0.00311133457213852!GO:0006950;response to stress;0.00317721449548899!GO:0006414;translational elongation;0.00318513773927495!GO:0019318;hexose metabolic process;0.00325769408939505!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00331043282747441!GO:0015002;heme-copper terminal oxidase activity;0.00331043282747441!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00331043282747441!GO:0004129;cytochrome-c oxidase activity;0.00331043282747441!GO:0030027;lamellipodium;0.00348020800713522!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00357489943223562!GO:0006807;nitrogen compound metabolic process;0.00358591534102055!GO:0003746;translation elongation factor activity;0.00358591534102055!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00361114416309802!GO:0001666;response to hypoxia;0.00364870862721984!GO:0046483;heterocycle metabolic process;0.00370636950023498!GO:0050425;carboxypeptidase B activity;0.00386410626072616!GO:0035257;nuclear hormone receptor binding;0.00389577372419912!GO:0006401;RNA catabolic process;0.0039966161844636!GO:0030663;COPI coated vesicle membrane;0.00400938119967421!GO:0030126;COPI vesicle coat;0.00400938119967421!GO:0005996;monosaccharide metabolic process;0.00404013822192275!GO:0043492;ATPase activity, coupled to movement of substances;0.00412601285546503!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00428389510957337!GO:0030118;clathrin coat;0.00428968401141695!GO:0043488;regulation of mRNA stability;0.00430765850447833!GO:0043487;regulation of RNA stability;0.00430765850447833!GO:0009083;branched chain family amino acid catabolic process;0.00443601998895447!GO:0046489;phosphoinositide biosynthetic process;0.00446174024715071!GO:0008312;7S RNA binding;0.00484197217063597!GO:0030127;COPII vesicle coat;0.00524732725473398!GO:0012507;ER to Golgi transport vesicle membrane;0.00524732725473398!GO:0006509;membrane protein ectodomain proteolysis;0.00536912149147192!GO:0033619;membrane protein proteolysis;0.00536912149147192!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00537608713795175!GO:0051252;regulation of RNA metabolic process;0.00540160452340436!GO:0000096;sulfur amino acid metabolic process;0.00557078751673227!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0056156210309235!GO:0045047;protein targeting to ER;0.0056156210309235!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0059310964957355!GO:0009100;glycoprotein metabolic process;0.00595565427567152!GO:0003697;single-stranded DNA binding;0.00598159681501117!GO:0006643;membrane lipid metabolic process;0.0060230299193498!GO:0009308;amine metabolic process;0.00612275239720872!GO:0042802;identical protein binding;0.0061632135540325!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00617766553373237!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00617766553373237!GO:0030029;actin filament-based process;0.00622129076831163!GO:0016481;negative regulation of transcription;0.00626529816037613!GO:0051539;4 iron, 4 sulfur cluster binding;0.00630704966724503!GO:0051087;chaperone binding;0.0064629118416464!GO:0006519;amino acid and derivative metabolic process;0.00647252662532239!GO:0030660;Golgi-associated vesicle membrane;0.00662887911129139!GO:0005885;Arp2/3 protein complex;0.00662887911129139!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00670903318076432!GO:0051128;regulation of cellular component organization and biogenesis;0.00682174805521183!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00697497007473048!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00697877993343363!GO:0030132;clathrin coat of coated pit;0.00704415523335572!GO:0008652;amino acid biosynthetic process;0.00745038641770085!GO:0030880;RNA polymerase complex;0.00751539705985984!GO:0005765;lysosomal membrane;0.0075473007254223!GO:0051651;maintenance of cellular localization;0.0078002163037044!GO:0044255;cellular lipid metabolic process;0.00788354368532644!GO:0008186;RNA-dependent ATPase activity;0.00796019627562572!GO:0008361;regulation of cell size;0.00803154246715942!GO:0008286;insulin receptor signaling pathway;0.00822785671682379!GO:0005083;small GTPase regulator activity;0.00825455415419791!GO:0006818;hydrogen transport;0.00865381149668485!GO:0042588;zymogen granule;0.00882723746929128!GO:0046467;membrane lipid biosynthetic process;0.00891258671831901!GO:0030137;COPI-coated vesicle;0.00891258671831901!GO:0032561;guanyl ribonucleotide binding;0.00891258671831901!GO:0019001;guanyl nucleotide binding;0.00891258671831901!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0089907202777585!GO:0005869;dynactin complex;0.00910780151911304!GO:0016049;cell growth;0.00913274621879394!GO:0007006;mitochondrial membrane organization and biogenesis;0.00938905392854452!GO:0015992;proton transport;0.00947409295058483!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00954581832818035!GO:0006635;fatty acid beta-oxidation;0.0099496354343928!GO:0030968;unfolded protein response;0.00998496444531397!GO:0051168;nuclear export;0.0103254728064286!GO:0005975;carbohydrate metabolic process;0.0103384791195469!GO:0006506;GPI anchor biosynthetic process;0.0105119130804966!GO:0051540;metal cluster binding;0.0106855119136364!GO:0051536;iron-sulfur cluster binding;0.0106855119136364!GO:0006505;GPI anchor metabolic process;0.0112103975353731!GO:0006354;RNA elongation;0.0112338405269093!GO:0045786;negative regulation of progression through cell cycle;0.0114152271391483!GO:0005741;mitochondrial outer membrane;0.0114753365068673!GO:0000059;protein import into nucleus, docking;0.011701370161594!GO:0006644;phospholipid metabolic process;0.0117697473457553!GO:0001558;regulation of cell growth;0.0117697473457553!GO:0019867;outer membrane;0.0117888541274333!GO:0006497;protein amino acid lipidation;0.0118029964810412!GO:0048487;beta-tubulin binding;0.0122021684779119!GO:0006508;proteolysis;0.0122528123736397!GO:0016791;phosphoric monoester hydrolase activity;0.0126250230329197!GO:0031301;integral to organelle membrane;0.0126250230329197!GO:0031968;organelle outer membrane;0.0127368787836427!GO:0031124;mRNA 3'-end processing;0.0128802199132735!GO:0046870;cadmium ion binding;0.0130217935688765!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0137004044143371!GO:0000428;DNA-directed RNA polymerase complex;0.0137004044143371!GO:0009165;nucleotide biosynthetic process;0.0137232883617201!GO:0006595;polyamine metabolic process;0.0138348513035725!GO:0050794;regulation of cellular process;0.014151419241336!GO:0015923;mannosidase activity;0.0143095724059105!GO:0007040;lysosome organization and biogenesis;0.0146169708599596!GO:0003729;mRNA binding;0.0154731106694782!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0155334019602372!GO:0030384;phosphoinositide metabolic process;0.0157107214879756!GO:0003702;RNA polymerase II transcription factor activity;0.0157665610347022!GO:0006626;protein targeting to mitochondrion;0.0157883486772172!GO:0051235;maintenance of localization;0.0161190974516636!GO:0042158;lipoprotein biosynthetic process;0.0162566019787252!GO:0006839;mitochondrial transport;0.0165695276784653!GO:0031902;late endosome membrane;0.0169684278469519!GO:0016408;C-acyltransferase activity;0.0176244960644188!GO:0016741;transferase activity, transferring one-carbon groups;0.0177203581693878!GO:0007039;vacuolar protein catabolic process;0.0180800248656855!GO:0008033;tRNA processing;0.0188869968151702!GO:0043284;biopolymer biosynthetic process;0.0189878307806249!GO:0004004;ATP-dependent RNA helicase activity;0.0193511325676978!GO:0032507;maintenance of cellular protein localization;0.019466100542399!GO:0003711;transcription elongation regulator activity;0.0194765320799577!GO:0015807;L-amino acid transport;0.0194978498113265!GO:0016197;endosome transport;0.019686774891002!GO:0006066;alcohol metabolic process;0.0204287147849375!GO:0006629;lipid metabolic process;0.0206024890455757!GO:0030125;clathrin vesicle coat;0.0215693246127492!GO:0030665;clathrin coated vesicle membrane;0.0215693246127492!GO:0009112;nucleobase metabolic process;0.021595925192264!GO:0001889;liver development;0.0220524588561642!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0221473001379446!GO:0003690;double-stranded DNA binding;0.0221753217891781!GO:0005092;GDP-dissociation inhibitor activity;0.0222677148420737!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0223624901599223!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0233158922196771!GO:0030119;AP-type membrane coat adaptor complex;0.0234608102391731!GO:0065004;protein-DNA complex assembly;0.0236026506979736!GO:0000097;sulfur amino acid biosynthetic process;0.0252689750137981!GO:0043022;ribosome binding;0.0253070047123082!GO:0032023;trypsinogen activation;0.0253909253447729!GO:0006013;mannose metabolic process;0.0253909253447729!GO:0006118;electron transport;0.027142432627695!GO:0050811;GABA receptor binding;0.0275742271389139!GO:0006892;post-Golgi vesicle-mediated transport;0.0283739019409801!GO:0045892;negative regulation of transcription, DNA-dependent;0.0286418226891874!GO:0009101;glycoprotein biosynthetic process;0.0286418226891874!GO:0008610;lipid biosynthetic process;0.0286418226891874!GO:0030569;chymotrypsin inhibitor activity;0.0291317727946252!GO:0005777;peroxisome;0.029175368034358!GO:0042579;microbody;0.029175368034358!GO:0051276;chromosome organization and biogenesis;0.029457002147488!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0298092078704468!GO:0035258;steroid hormone receptor binding;0.0306650349689648!GO:0004680;casein kinase activity;0.0306650349689648!GO:0042589;zymogen granule membrane;0.0306650349689648!GO:0006672;ceramide metabolic process;0.0307358537504453!GO:0006518;peptide metabolic process;0.0311139801201404!GO:0008168;methyltransferase activity;0.03209362871455!GO:0005832;chaperonin-containing T-complex;0.0323270338970707!GO:0019511;peptidyl-proline hydroxylation;0.0325200447252263!GO:0018208;peptidyl-proline modification;0.0325200447252263!GO:0019471;4-hydroxyproline metabolic process;0.0325200447252263!GO:0018401;peptidyl-proline hydroxylation to 4-hydroxy-L-proline;0.0325200447252263!GO:0003779;actin binding;0.032930713338577!GO:0009116;nucleoside metabolic process;0.032930713338577!GO:0008047;enzyme activator activity;0.0333950097619872!GO:0007030;Golgi organization and biogenesis;0.0337252034377625!GO:0004300;enoyl-CoA hydratase activity;0.0345296744356244!GO:0009003;signal peptidase activity;0.0347417144576419!GO:0051726;regulation of cell cycle;0.0352554148464039!GO:0005684;U2-dependent spliceosome;0.0353317425351359!GO:0006979;response to oxidative stress;0.0353574773574768!GO:0006621;protein retention in ER;0.0355082527283116!GO:0043087;regulation of GTPase activity;0.0356306556533144!GO:0000074;regulation of progression through cell cycle;0.0362335040915439!GO:0004177;aminopeptidase activity;0.0362432512585511!GO:0022406;membrane docking;0.0371650621787611!GO:0048278;vesicle docking;0.0371650621787611!GO:0065009;regulation of a molecular function;0.0373062947592361!GO:0030135;coated vesicle;0.0374370711658686!GO:0017166;vinculin binding;0.0376557618812307!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0386979301353685!GO:0000049;tRNA binding;0.0387805428070653!GO:0015068;glycine amidinotransferase activity;0.0388265210698482!GO:0015067;amidinotransferase activity;0.0388265210698482!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0388265210698482!GO:0006897;endocytosis;0.0389946552620205!GO:0010324;membrane invagination;0.0389946552620205!GO:0046519;sphingoid metabolic process;0.0392621387260748!GO:0030131;clathrin adaptor complex;0.0392736051375224!GO:0030145;manganese ion binding;0.0393282524320216!GO:0006333;chromatin assembly or disassembly;0.0399560567026306!GO:0005758;mitochondrial intermembrane space;0.0400412100330488!GO:0005637;nuclear inner membrane;0.040191893681168!GO:0045185;maintenance of protein localization;0.0406304719582797!GO:0006417;regulation of translation;0.0408113036136594!GO:0004722;protein serine/threonine phosphatase activity;0.0408113036136594!GO:0006904;vesicle docking during exocytosis;0.0412369543722454!GO:0006516;glycoprotein catabolic process;0.0414164094195249!GO:0031625;ubiquitin protein ligase binding;0.0414164094195249!GO:0032594;protein transport within lipid bilayer;0.0414164094195249!GO:0032907;transforming growth factor-beta3 production;0.0414164094195249!GO:0032596;protein transport into lipid raft;0.0414164094195249!GO:0032910;regulation of transforming growth factor-beta3 production;0.0414164094195249!GO:0032595;B cell receptor transport within lipid bilayer;0.0414164094195249!GO:0033606;chemokine receptor transport within lipid bilayer;0.0414164094195249!GO:0032600;chemokine receptor transport out of lipid raft;0.0414164094195249!GO:0032599;protein transport out of lipid raft;0.0414164094195249!GO:0032597;B cell receptor transport into lipid raft;0.0414164094195249!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0414164094195249!GO:0006730;one-carbon compound metabolic process;0.0414308334012272!GO:0007242;intracellular signaling cascade;0.0414599073085797!GO:0016788;hydrolase activity, acting on ester bonds;0.0420080220778178!GO:0005784;translocon complex;0.0420856558087384!GO:0007033;vacuole organization and biogenesis;0.0423457202066093!GO:0030911;TPR domain binding;0.0426188385075493!GO:0006378;mRNA polyadenylation;0.04433184041247!GO:0008139;nuclear localization sequence binding;0.0448632197164979!GO:0008097;5S rRNA binding;0.0457330443922786!GO:0009303;rRNA transcription;0.0457330443922786!GO:0009719;response to endogenous stimulus;0.0465389313986724!GO:0031529;ruffle organization and biogenesis;0.0467334261124077!GO:0016486;peptide hormone processing;0.0467334261124077!GO:0008320;protein transmembrane transporter activity;0.0467701398943877!GO:0007266;Rho protein signal transduction;0.0467701398943877!GO:0051659;maintenance of mitochondrion localization;0.0488016607430355!GO:0051657;maintenance of organelle localization;0.0488016607430355!GO:0006974;response to DNA damage stimulus;0.0489385670445154
|sample_id=10049
|sample_id=10049
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=pancreas
|sample_tissue=pancreas
|top_motifs=NR5A1,2:3.88658998095;MYOD1:3.79731205672;HNF1A:3.15665538875;ATF6:2.79243369411;RXRA_VDR{dimer}:2.75913549536;SNAI1..3:2.54982649934;TOPORS:2.49429937987;ZEB1:2.45607888976;HAND1,2:2.3517989704;TLX2:2.32113702444;EN1,2:2.30920648479;LMO2:2.28888884149;GATA6:2.27976599436;XBP1:1.93940526167;ONECUT1,2:1.74995911545;FOXA2:1.74540878542;GCM1,2:1.68985702141;TBP:1.66777778009;RBPJ:1.64547234404;STAT5{A,B}:1.51276132928;FOX{D1,D2}:1.40511665756;MTF1:1.38478587138;AIRE:1.36439824287;DBP:1.293088442;NR6A1:1.25531322683;AR:1.23814121052;PITX1..3:1.21379766402;ALX1:1.18967429088;NKX6-1,2:1.14227118276;ZNF423:1.12673183513;TAL1_TCF{3,4,12}:1.10409549591;bHLH_family:1.09838200643;FOXO1,3,4:0.995949284488;TFAP2{A,C}:0.969670885355;NR1H4:0.954820460362;POU6F1:0.916479525501;BPTF:0.897809431429;EP300:0.888836374346;VSX1,2:0.851560301114;FOXP1:0.829219983073;SP1:0.82578952951;ESRRA:0.799596480553;TFAP4:0.743063612836;HMX1:0.709434502866;ARID5B:0.696942532417;NKX2-3_NKX2-5:0.69360836565;PBX1:0.674514457173;FOX{F1,F2,J1}:0.672721779939;BREu{core}:0.655684227885;CUX2:0.644004728599;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.633528275818;HNF4A_NR2F1,2:0.628808383231;IKZF1:0.628474881337;TFAP2B:0.584705510193;YY1:0.575749634115;MAFB:0.510151195751;HIC1:0.509315738216;STAT2,4,6:0.474692724878;PAX6:0.430947843518;GTF2A1,2:0.421295673424;LHX3,4:0.394335329803;MED-1{core}:0.38881471836;NKX3-2:0.344665951028;FOX{I1,J2}:0.317819957708;FOXD3:0.305064473179;ADNP_IRX_SIX_ZHX:0.288179445196;FOXN1:0.254557601562;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.238740797863;MTE{core}:0.231842518812;TFCP2:0.231264865429;GLI1..3:0.228070916328;CDC5L:0.209273279238;MYFfamily:0.184595228767;STAT1,3:0.152932589161;REST:0.146991061391;ZFP161:0.12830499897;T:0.118341765984;MEF2{A,B,C,D}:0.114309228291;PAX1,9:0.112280188186;XCPE1{core}:0.110671895645;NKX2-2,8:0.10007017097;HLF:0.0889216600616;TLX1..3_NFIC{dimer}:0.0885684483381;ZNF238:0.0700447311619;NHLH1,2:0.0364500144073;EGR1..3:-0.0125018469951;NFIX:-0.0145700814043;POU3F1..4:-0.0165726383635;TEAD1:-0.0201618213033;HOXA9_MEIS1:-0.0285898353809;FOXM1:-0.0615484910168;GTF2I:-0.0985705979566;CREB1:-0.124112927007;IRF7:-0.155966819871;FOXL1:-0.157079993212;ZNF143:-0.16968761749;SOX5:-0.171190141609;IKZF2:-0.18513216971;HOX{A6,A7,B6,B7}:-0.266833753593;UFEwm:-0.274165156054;JUN:-0.279728135355;HES1:-0.289734620416;TP53:-0.294682789268;NFIL3:-0.313870700163;CEBPA,B_DDIT3:-0.322263959709;MAZ:-0.323349975656;PATZ1:-0.323846246406;CDX1,2,4:-0.352195444628;NFKB1_REL_RELA:-0.355257441935;SPZ1:-0.356849902858;RFX1:-0.368267512497;HIF1A:-0.37116278575;ELK1,4_GABP{A,B1}:-0.374694966424;MYBL2:-0.376456237345;PDX1:-0.37902712538;ATF5_CREB3:-0.385613269489;ELF1,2,4:-0.385888235488;SMAD1..7,9:-0.388612963673;ATF4:-0.409111865772;AHR_ARNT_ARNT2:-0.413567922592;RREB1:-0.442039424469;ZNF148:-0.459333886693;SOX2:-0.464841798342;GATA4:-0.472284564994;GFI1B:-0.478796492165;ETS1,2:-0.487549619856;POU2F1..3:-0.505467650539;NFY{A,B,C}:-0.514091051827;ZBTB16:-0.52560220338;RUNX1..3:-0.539704553362;SREBF1,2:-0.546194312847;GZF1:-0.554963448972;ZBTB6:-0.564918440767;NRF1:-0.590165540959;PAX3,7:-0.595691623533;BACH2:-0.608286008214;NANOG{mouse}:-0.616919102725;PRDM1:-0.619922034098;TBX4,5:-0.626458336586;ATF2:-0.631171197084;SPI1:-0.666472346484;FOXP3:-0.681903111152;PPARG:-0.687778436095;FOS_FOS{B,L1}_JUN{B,D}:-0.693666005725;PAX5:-0.711223719645;NFE2:-0.717446220196;SPIB:-0.72154382459;IRF1,2:-0.727806456612;ESR1:-0.779392691778;OCT4_SOX2{dimer}:-0.809127463464;GFI1:-0.848106777765;FOSL2:-0.876885354239;HSF1,2:-0.887636879759;SOX17:-0.897424093186;TGIF1:-0.90125639409;RORA:-0.91636152108;MZF1:-0.921604854464;RXR{A,B,G}:-0.931667910827;KLF4:-0.932353466539;RFX2..5_RFXANK_RFXAP:-0.934227820269;ALX4:-0.966373494619;ZNF384:-0.979894388629;POU1F1:-0.983511676591;CRX:-1.00516297413;NFATC1..3:-1.00564439911;SOX{8,9,10}:-1.03666514012;NR3C1:-1.06921855915;HOX{A5,B5}:-1.13834248972;POU5F1:-1.14501266143;FOXQ1:-1.15815527431;SRF:-1.17720732387;NKX3-1:-1.19022901826;LEF1_TCF7_TCF7L1,2:-1.19484676616;EBF1:-1.22164292511;PAX2:-1.22347232646;E2F1..5:-1.23888795164;PRRX1,2:-1.26452817061;EVI1:-1.28744095847;ZIC1..3:-1.33555176149;HMGA1,2:-1.36580650646;NANOG:-1.42903469782;NFE2L1:-1.49857709231;NFE2L2:-1.50912498284;HOX{A4,D4}:-1.58366242219;TEF:-1.64749682385;MYB:-1.66501571244;NKX2-1,4:-1.68950529265;DMAP1_NCOR{1,2}_SMARC:-1.69617735307;PAX4:-1.77296485417;HBP1_HMGB_SSRP1_UBTF:-2.00284073667;TFDP1:-2.02619530717;PAX8:-2.14498548402
|top_motifs=NR5A1,2:3.88658998095;MYOD1:3.79731205672;HNF1A:3.15665538875;ATF6:2.79243369411;RXRA_VDR{dimer}:2.75913549536;SNAI1..3:2.54982649934;TOPORS:2.49429937987;ZEB1:2.45607888976;HAND1,2:2.3517989704;TLX2:2.32113702444;EN1,2:2.30920648479;LMO2:2.28888884149;GATA6:2.27976599436;XBP1:1.93940526167;ONECUT1,2:1.74995911545;FOXA2:1.74540878542;GCM1,2:1.68985702141;TBP:1.66777778009;RBPJ:1.64547234404;STAT5{A,B}:1.51276132928;FOX{D1,D2}:1.40511665756;MTF1:1.38478587138;AIRE:1.36439824287;DBP:1.293088442;NR6A1:1.25531322683;AR:1.23814121052;PITX1..3:1.21379766402;ALX1:1.18967429088;NKX6-1,2:1.14227118276;ZNF423:1.12673183513;TAL1_TCF{3,4,12}:1.10409549591;bHLH_family:1.09838200643;FOXO1,3,4:0.995949284488;TFAP2{A,C}:0.969670885355;NR1H4:0.954820460362;POU6F1:0.916479525501;BPTF:0.897809431429;EP300:0.888836374346;VSX1,2:0.851560301114;FOXP1:0.829219983073;SP1:0.82578952951;ESRRA:0.799596480553;TFAP4:0.743063612836;HMX1:0.709434502866;ARID5B:0.696942532417;NKX2-3_NKX2-5:0.69360836565;PBX1:0.674514457173;FOX{F1,F2,J1}:0.672721779939;BREu{core}:0.655684227885;CUX2:0.644004728599;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.633528275818;HNF4A_NR2F1,2:0.628808383231;IKZF1:0.628474881337;TFAP2B:0.584705510193;YY1:0.575749634115;MAFB:0.510151195751;HIC1:0.509315738216;STAT2,4,6:0.474692724878;PAX6:0.430947843518;GTF2A1,2:0.421295673424;LHX3,4:0.394335329803;MED-1{core}:0.38881471836;NKX3-2:0.344665951028;FOX{I1,J2}:0.317819957708;FOXD3:0.305064473179;ADNP_IRX_SIX_ZHX:0.288179445196;FOXN1:0.254557601562;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.238740797863;MTE{core}:0.231842518812;TFCP2:0.231264865429;GLI1..3:0.228070916328;CDC5L:0.209273279238;MYFfamily:0.184595228767;STAT1,3:0.152932589161;REST:0.146991061391;ZFP161:0.12830499897;T:0.118341765984;MEF2{A,B,C,D}:0.114309228291;PAX1,9:0.112280188186;XCPE1{core}:0.110671895645;NKX2-2,8:0.10007017097;HLF:0.0889216600616;TLX1..3_NFIC{dimer}:0.0885684483381;ZNF238:0.0700447311619;NHLH1,2:0.0364500144073;EGR1..3:-0.0125018469951;NFIX:-0.0145700814043;POU3F1..4:-0.0165726383635;TEAD1:-0.0201618213033;HOXA9_MEIS1:-0.0285898353809;FOXM1:-0.0615484910168;GTF2I:-0.0985705979566;CREB1:-0.124112927007;IRF7:-0.155966819871;FOXL1:-0.157079993212;ZNF143:-0.16968761749;SOX5:-0.171190141609;IKZF2:-0.18513216971;HOX{A6,A7,B6,B7}:-0.266833753593;UFEwm:-0.274165156054;JUN:-0.279728135355;HES1:-0.289734620416;TP53:-0.294682789268;NFIL3:-0.313870700163;CEBPA,B_DDIT3:-0.322263959709;MAZ:-0.323349975656;PATZ1:-0.323846246406;CDX1,2,4:-0.352195444628;NFKB1_REL_RELA:-0.355257441935;SPZ1:-0.356849902858;RFX1:-0.368267512497;HIF1A:-0.37116278575;ELK1,4_GABP{A,B1}:-0.374694966424;MYBL2:-0.376456237345;PDX1:-0.37902712538;ATF5_CREB3:-0.385613269489;ELF1,2,4:-0.385888235488;SMAD1..7,9:-0.388612963673;ATF4:-0.409111865772;AHR_ARNT_ARNT2:-0.413567922592;RREB1:-0.442039424469;ZNF148:-0.459333886693;SOX2:-0.464841798342;GATA4:-0.472284564994;GFI1B:-0.478796492165;ETS1,2:-0.487549619856;POU2F1..3:-0.505467650539;NFY{A,B,C}:-0.514091051827;ZBTB16:-0.52560220338;RUNX1..3:-0.539704553362;SREBF1,2:-0.546194312847;GZF1:-0.554963448972;ZBTB6:-0.564918440767;NRF1:-0.590165540959;PAX3,7:-0.595691623533;BACH2:-0.608286008214;NANOG{mouse}:-0.616919102725;PRDM1:-0.619922034098;TBX4,5:-0.626458336586;ATF2:-0.631171197084;SPI1:-0.666472346484;FOXP3:-0.681903111152;PPARG:-0.687778436095;FOS_FOS{B,L1}_JUN{B,D}:-0.693666005725;PAX5:-0.711223719645;NFE2:-0.717446220196;SPIB:-0.72154382459;IRF1,2:-0.727806456612;ESR1:-0.779392691778;OCT4_SOX2{dimer}:-0.809127463464;GFI1:-0.848106777765;FOSL2:-0.876885354239;HSF1,2:-0.887636879759;SOX17:-0.897424093186;TGIF1:-0.90125639409;RORA:-0.91636152108;MZF1:-0.921604854464;RXR{A,B,G}:-0.931667910827;KLF4:-0.932353466539;RFX2..5_RFXANK_RFXAP:-0.934227820269;ALX4:-0.966373494619;ZNF384:-0.979894388629;POU1F1:-0.983511676591;CRX:-1.00516297413;NFATC1..3:-1.00564439911;SOX{8,9,10}:-1.03666514012;NR3C1:-1.06921855915;HOX{A5,B5}:-1.13834248972;POU5F1:-1.14501266143;FOXQ1:-1.15815527431;SRF:-1.17720732387;NKX3-1:-1.19022901826;LEF1_TCF7_TCF7L1,2:-1.19484676616;EBF1:-1.22164292511;PAX2:-1.22347232646;E2F1..5:-1.23888795164;PRRX1,2:-1.26452817061;EVI1:-1.28744095847;ZIC1..3:-1.33555176149;HMGA1,2:-1.36580650646;NANOG:-1.42903469782;NFE2L1:-1.49857709231;NFE2L2:-1.50912498284;HOX{A4,D4}:-1.58366242219;TEF:-1.64749682385;MYB:-1.66501571244;NKX2-1,4:-1.68950529265;DMAP1_NCOR{1,2}_SMARC:-1.69617735307;PAX4:-1.77296485417;HBP1_HMGB_SSRP1_UBTF:-2.00284073667;TFDP1:-2.02619530717;PAX8:-2.14498548402
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10049-101G4;search_select_hide=table117:FF:10049-101G4
}}
}}

Latest revision as of 12:17, 3 June 2020

Name:pancreas, adult, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11756
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuepancreas
dev stage52 years old adult
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8081302A
catalog numberCat:636577
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004858
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11756 CAGE DRX008698 DRR009570
Accession ID Hg19

Library idBAMCTSS
CNhs11756 DRZ000995 DRZ002380
Accession ID Hg38

Library idBAMCTSS
CNhs11756 DRZ012345 DRZ013730
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.278
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.487
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0138
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.315
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.341
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.251
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.378
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.525
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0717
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung1.781
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.619
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11756

Jaspar motifP-value
MA0002.20.917
MA0003.10.316
MA0004.10.11
MA0006.10.248
MA0007.10.0612
MA0009.10.729
MA0014.10.912
MA0017.10.353
MA0018.20.231
MA0019.10.539
MA0024.18.93872e-5
MA0025.10.193
MA0027.10.588
MA0028.10.0244
MA0029.10.319
MA0030.10.108
MA0031.10.487
MA0035.20.00128
MA0038.10.0151
MA0039.20.736
MA0040.10.846
MA0041.10.478
MA0042.10.682
MA0043.10.224
MA0046.13.32612e-37
MA0047.20.117
MA0048.10.00292
MA0050.10.0117
MA0051.10.0559
MA0052.10.651
MA0055.10.109
MA0057.10.228
MA0058.10.457
MA0059.10.152
MA0060.10.00955
MA0061.11.45609e-4
MA0062.21.28654e-4
MA0065.20.0115
MA0066.10.53
MA0067.10.00899
MA0068.10.00598
MA0069.10.521
MA0070.10.266
MA0071.10.421
MA0072.10.181
MA0073.10.766
MA0074.10.853
MA0076.10.0175
MA0077.10.415
MA0078.10.159
MA0079.20.308
MA0080.23.85604e-4
MA0081.10.00147
MA0083.10.163
MA0084.10.168
MA0087.10.643
MA0088.10.22
MA0090.10.682
MA0091.10.0348
MA0092.10.412
MA0093.10.228
MA0099.26.35277e-13
MA0100.10.0126
MA0101.10.00262
MA0102.20.527
MA0103.11.30428e-9
MA0104.20.278
MA0105.11.75164e-5
MA0106.10.361
MA0107.17.18095e-4
MA0108.23.3911e-4
MA0111.10.991
MA0112.20.0462
MA0113.10.261
MA0114.10.0366
MA0115.10.115
MA0116.10.594
MA0117.10.418
MA0119.10.958
MA0122.10.604
MA0124.10.72
MA0125.10.729
MA0131.10.898
MA0135.10.89
MA0136.12.41151e-5
MA0137.20.721
MA0138.20.0249
MA0139.10.0451
MA0140.10.194
MA0141.10.00231
MA0142.10.89
MA0143.10.454
MA0144.10.711
MA0145.10.0548
MA0146.10.0703
MA0147.10.121
MA0148.10.223
MA0149.10.585
MA0150.11.85407e-4
MA0152.10.0741
MA0153.17.92616e-15
MA0154.10.793
MA0155.10.542
MA0156.11.06518e-4
MA0157.10.982
MA0159.10.069
MA0160.10.271
MA0162.10.857
MA0163.10.0663
MA0164.10.527
MA0258.10.249
MA0259.10.998



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11756

Novel motifP-value
10.422
100.217
1000.367
1010.409
1020.886
1030.973
1040.318
1050.569
1060.104
1070.0483
1080.504
1090.356
110.445
1100.775
1110.828
1120.096
1130.527
1140.987
1150.391
1160.0248
1170.281
1180.411
1190.0146
120.636
1200.303
1210.381
1220.221
1232.14847e-4
1240.694
1250.539
1260.843
1270.753
1280.0707
1290.893
130.174
1300.233
1310.438
1320.0397
1330.379
1340.738
1350.71
1360.738
1370.0333
1380.818
1390.329
140.52
1400.817
1410.578
1420.572
1430.0256
1440.773
1450.149
1460.232
1470.693
1480.674
1490.302
150.736
1500.841
1510.0642
1520.0281
1530.138
1540.402
1550.325
1560.577
1570.637
1580.733
1590.211
160.798
1600.734
1610.907
1620.585
1630.268
1640.621
1650.942
1660.529
1670.811
1680.858
1690.0127
170.692
180.271
190.0214
20.0534
200.394
210.131
220.997
230.896
240.976
250.761
260.0772
270.629
280.979
290.332
30.655
300.423
310.377
320.592
330.85
340.797
350.576
360.487
370.828
380.212
390.501
40.79
400.587
410.0153
420.712
430.414
440.662
450.582
460.648
470.63
480.3
490.0875
50.9
500.816
510.933
520.238
530.607
540.363
550.916
560.602
570.722
580.558
590.203
60.746
600.288
610.821
620.776
630.411
640.46
650.213
660.0875
670.223
680.146
690.566
70.209
700.334
710.434
720.658
730.163
740.0211
750.445
760.768
770.015
780.154
790.715
80.134
800.261
810.894
820.636
830.498
840.424
850.0459
860.407
870.856
880.371
890.358
90.401
900.144
910.14
920.129
930.932
940.0533
950.826
960.506
970.637
980.563
990.456



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11756


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010049 (human pancreas - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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