FF:10816-111B6: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005737 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007883;DRR008755;DRZ000180;DRZ001565;DRZ011530;DRZ012915 | ||
|ancestors_in_anatomy_facet= | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0011472 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/epitheloid%2520carcinoma%2520cell%2520line%253a%2520HelaS3%2520ENCODE%252c%2520biol_rep2.CNhs12326.10816-111B6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10816-111B6 | |id=FF:10816-111B6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011472 | ||
|is_obsolete= | |||
|library_id=CNhs12326 | |||
|library_id_phase_based=2:CNhs12326 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10816 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10816 | |||
|name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2 | |name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12326,LSID913,release011,COMPLETED | |profile_hcage=CNhs12326,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0296261542736008,0,0,0,0,0.0396330116686251,0.336345456012288,-0.163450708523815,0.305668170930702,0,0,0,0,0,0,0,0,0,0,0.0306358713632606,0.0306358713632606,0,-0.094070701801226,0,0,0,0,0,0.0373168194809814,0,0,0.203388866233425,0,0,0,0,0,0,0,0,0,0,0,0,-0.137355035923553,0.0860991584199648,0,0,0,0,0,0,0,0.100869487005809,0,0,0,0,0,0,0.111382589682275,0.281168707355173,0,0,-0.0112444687931321,0,0,0,0,0,0,0,0,0.0306358713632606,0,0,0,0,0,0,0,0,0,0.0296261542736008,0,0,0,0,0,-0.166194506458151,0,0,0,0.169933227429408,-0.168147823485886,0,0,0,0,0.081408777735758,0.299315672120108,0,0,0,0,0,0,0.0306358713632606,0,0,0,0,0,0,0,0,0,0,0.493204570298308,0.378161068597778,0,0,-0.0634698810296808,-0.138188169367309,0,0,0.0881864399935703,0,0,0 | |||
|repeat_enrich_byname=0,0.290070494212306,0.0306358713632606,0.0592523085472017,0.081408777735758,0,0,0.135274715749039,0,0,0,0,0.0306358713632606,0,0,0,-0.135796285603289,0,0.127611202585388,0.014405562820352,0,0,0.182807653073201,0,0.0592523085472017,0,0,0,0,0.0306358713632606,0,0,0.110150397493071,0,0.169120593284711,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,0.00110994549891957,0.187888056261345,0,0,0.0306358713632606,0,-0.108055957901524,0,-0.09024361243048,0.0286624213588581,-0.221611588102807,-0.687762447208119,0.0035398117660197,0,0,0,-0.533661837442873,0.29830660243602,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.0302745693481972,-0.0347101140720908,0,0.1164024890264,0,0,0,0,0,0.111382589682275,0,0,0,0.0153179356816303,0,-0.0574934668214365,0.622091254230428,0.0583675148916127,0,0,0,-0.0976786577125233,0,0,0.530702673737085,-0.0217613562276511,-0.000247529371180888,-0.17002149292171,0,-0.302389727009913,-0.174492021697031,-0.299460566817832,0.261510813284278,-0.147401849371139,-0.189981719549847,0,-0.0243644080699917,-0.496202134901706,0.00351887774053883,-0.166194506458151,0.0207425228059658,-0.450144208515807,0.165661079796991,0,0,0,0.0749770355762225,0,0,0.184521891362418,-0.070436364968073,-0.138796802110948,-0.132616819886619,0.198497719584266,-0.162970204585749,-0.0395325284566706,-0.237903308022569,0,-0.195891529818696,0,0,-0.0284991171555212,0.041968016847443,0.52615618924833,-0.132024865495821,0,0.030007977759551,-0.0683442610773682,0,-0.104883752303299,-0.247365261806147,0,0,0.00673802075828878,0.0306358713632606,0,0.26531264978427,0,0.0306358713632606,0.210492876750169,-0.0770458895723415,0.0572149326567613,0,0.103398860772808,0.0296261542736008,0.0798007635099585,0,-0.00843512523430945,-0.160448763922115,0.00797549097982386,-0.233381496049034,0,0.206906369028137,0.195282736437375,0.0545424485350228,-0.336295646971773,0.000805481735376479,0.239511273095164,0.0286885528286154,0.169933227429408,-0.26534189658609,0,-0.0881268324752877,0,-0.88354475051838,-0.0185021442946965,0.00941515457316933,-0.223898228247953,0,-0.267112276630783,0,0.350541078098314,0.0145310070102397,0.0200449558520281,0.0992627207960923,0.193068622777236,0.260364573622772,0,-0.340434352694249,-0.409969869176196,0,0,0.00351705075331188,0,-0.150367083334639,0.123678500916514,-0.182024273590988,0.0566357222413348,0,-0.386123497291165,0,0,-0.146848548098303,0.168480623334103,0,-0.277560518074929,-0.231041845615618,-0.164229459147236,-0.0298719150149692,0.0860991584199648,0,0.331032897563803,0,0,0.60949390878138,-0.0132097245711719,-0.619783323958633,-0.118051625737717,-0.074160266930359,-0.108622809454255,0,0,0.14393390467731,0,-0.357418800334773,0,0,-0.0101901086056687,0,0,0,0,-0.050230443451611,0,0,0,0,0,0,0,-0.385983323139651,0.382235874362493,0,-0.0316735127583669,0,0.0306358713632606,0,0,0,0,0,0,-0.0186289580577348,-0.110659943274071,-0.0369182572564554,0.0153179356816303,0,0,0,0.0577574837778703,-0.0679618463456849,0,0.0260579988461922,0.0306358713632606,0,0,0,-0.0555051184259508,0,0,0,0,0.0536521326286114,0.0307497784500747,0,0,0,0.30856085002791,0,0,0,0,-0.33115974120723,0,0,0.035939675231455,0,0.085551216420887,0.0763388257969825,0,0.144495457040136,-0.427957583812706,0.0308940624692902,0,0,-0.0819030028164232,0,0.0296261542736008,0.25063380962053,-0.0145781302290949,0.290070494212306,0,0,0,0,0,0,0,0.0239557520458804,0,0,0.0185323851213628,0,0,0,0,0.157920705343824,0,0,0,-0.324658652517457,0.0430506590905285,0.0290963736287314,0,0,0,0,0.0153179356816303,0,0.065616041407829,0.0832962577516209,0,0,0.0430495792099824,0,0,0.0306358713632606,0,0,0.189570047663586,0,0,0,0,0,0.281168707355173,0,0,0,0.0592523085472017,0.453415636517581,0,0,0.0127083620187921,0,0.0262068457186072,0,0,0,0,0,0,0,0,0.0306358713632606,0,0,0.0766319557195635,-0.319124041554918,0,0.219533144874026,0,0,0,0.336345456012288,0,-0.163450708523815,0,0.157920705343824,0,0,0.0213903420400617,0,0,0,-0.104796384789156,0,0.0396330116686251,0,0,0,0,0,0,0.0296261542736008,0.0153179356816303,0,0,0,0,0,0.0306358713632606,0,0,0,0,0.189080534298889,0,0,-0.151833761475927,0,-0.175824926290634,-0.0446120127171368,0,0,0.0291706314690265,0,0,0,0,0,0,0.0243508708126106,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378161068597778,0,0,0,0,0,0,0.078103221670556,0,0,0,0,0,0,0,0.0373168194809814,0,0,-0.0767148741188959,0,0,0.0017181623522856,0.0306358713632606,0,0,0.115256498042023,0.0938664440393975,-0.0924144770646017,0,0,0.0306358713632606,-0.054385572482455,0,0,0,0.111382589682275,0.13317365433611,0,0,0,0,0,0,0,0,0.0592523085472017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0306358713632606,0,0,0,0,-0.094070701801226,0,0,0,0,0,0,0,0,0,0,0,0,0.0153179356816303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0592523085472017,0,0,0,0,0,0,0.0109327266798146,0.0592523085472017,0,0,0,0,0,0,0,0,0,0,0,0,0.0306358713632606,0,0,0,0,0,0,0,0.0306358713632606,0.226031175072478,0,0,0,-0.153833921109842,0,0,0,0,0,0,0.0592523085472017,0,0.238270264445636,0,0,0,0,0,0,0,0,0,0,0.6396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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=61.822 | |rna_weight_ug=61.822 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=HelaS3 | |sample_cell_line=HelaS3 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.03673709679697e-280!GO:0043226;organelle;6.77332190835732e-236!GO:0043229;intracellular organelle;2.76515301083319e-235!GO:0043227;membrane-bound organelle;1.57371237050464e-234!GO:0043231;intracellular membrane-bound organelle;1.57371237050464e-234!GO:0005737;cytoplasm;1.05477876123855e-175!GO:0044422;organelle part;3.51229481110751e-173!GO:0044446;intracellular organelle part;2.83270648081908e-171!GO:0044444;cytoplasmic part;3.46362060937017e-121!GO:0005634;nucleus;6.52889663397844e-119!GO:0032991;macromolecular complex;4.05348280859167e-117!GO:0044237;cellular metabolic process;1.07326401415615e-114!GO:0044238;primary metabolic process;1.09617527836564e-109!GO:0043170;macromolecule metabolic process;1.29389701525533e-100!GO:0044428;nuclear part;2.17115400936497e-99!GO:0030529;ribonucleoprotein complex;1.34140133968579e-97!GO:0043233;organelle lumen;1.49812288086562e-91!GO:0031974;membrane-enclosed lumen;1.49812288086562e-91!GO:0003723;RNA binding;7.85455163791089e-87!GO:0005739;mitochondrion;9.25273546902974e-81!GO:0005515;protein binding;2.21176715412901e-71!GO:0006396;RNA processing;2.82235833378359e-65!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.17726998951057e-63!GO:0043283;biopolymer metabolic process;1.94496094196544e-63!GO:0031981;nuclear lumen;3.63962270884445e-59!GO:0043234;protein complex;5.30549814336606e-59!GO:0006412;translation;6.61119762177095e-58!GO:0005840;ribosome;2.41956289483239e-57!GO:0010467;gene expression;1.89297194906997e-56!GO:0006259;DNA metabolic process;4.6678709944403e-55!GO:0044429;mitochondrial part;9.84707844336245e-53!GO:0031967;organelle envelope;3.29563782616264e-50!GO:0031975;envelope;5.48157041835536e-50!GO:0003735;structural constituent of ribosome;3.36818234176123e-49!GO:0044249;cellular biosynthetic process;2.81945267204162e-48!GO:0016071;mRNA metabolic process;4.29112632872057e-48!GO:0031090;organelle membrane;6.5752824106857e-48!GO:0019538;protein metabolic process;7.84808967180083e-48!GO:0016043;cellular component organization and biogenesis;2.04414549429432e-47!GO:0043228;non-membrane-bound organelle;2.2846031880268e-46!GO:0043232;intracellular non-membrane-bound organelle;2.2846031880268e-46!GO:0044267;cellular protein metabolic process;5.21962326070154e-44!GO:0009058;biosynthetic process;5.97735451800095e-44!GO:0008380;RNA splicing;1.84166802580037e-43!GO:0044260;cellular macromolecule metabolic process;3.73880464656225e-43!GO:0006397;mRNA processing;5.13400736788071e-43!GO:0033279;ribosomal subunit;6.28931079759995e-41!GO:0006996;organelle organization and biogenesis;2.29383755825539e-40!GO:0007049;cell cycle;6.01658894039008e-40!GO:0009059;macromolecule biosynthetic process;1.78988542857258e-39!GO:0003676;nucleic acid binding;3.41268317122418e-39!GO:0033036;macromolecule localization;5.05428736241939e-38!GO:0015031;protein transport;1.59818186845983e-37!GO:0005654;nucleoplasm;4.43384887191386e-37!GO:0005829;cytosol;5.17663861700685e-37!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.65962177439049e-35!GO:0065003;macromolecular complex assembly;3.72854286405541e-35!GO:0005740;mitochondrial envelope;1.13494719717536e-33!GO:0019866;organelle inner membrane;1.70690839181018e-33!GO:0008104;protein localization;1.79906205338514e-33!GO:0045184;establishment of protein localization;2.52365061876987e-33!GO:0000166;nucleotide binding;4.55187910820714e-33!GO:0006974;response to DNA damage stimulus;6.29321975352127e-33!GO:0031966;mitochondrial membrane;4.79176653365066e-32!GO:0046907;intracellular transport;2.40937920088801e-31!GO:0022607;cellular component assembly;6.17154317490089e-31!GO:0005743;mitochondrial inner membrane;6.57608543545164e-31!GO:0005681;spliceosome;7.17559394582588e-31!GO:0005694;chromosome;7.17559394582588e-31!GO:0022402;cell cycle process;1.51624946334373e-29!GO:0044451;nucleoplasm part;2.91871301555797e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.02894417349961e-29!GO:0006281;DNA repair;1.53424259591746e-28!GO:0000278;mitotic cell cycle;3.00457164261049e-28!GO:0016070;RNA metabolic process;1.14153273152822e-27!GO:0044427;chromosomal part;2.6667020036891e-27!GO:0006886;intracellular protein transport;1.74583789549241e-25!GO:0016462;pyrophosphatase activity;3.64540855212392e-25!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.9868291930593e-25!GO:0016817;hydrolase activity, acting on acid anhydrides;6.39497333549613e-25!GO:0006260;DNA replication;7.59454615424504e-25!GO:0017111;nucleoside-triphosphatase activity;1.83571079801793e-24!GO:0009719;response to endogenous stimulus;2.20390437969428e-24!GO:0016874;ligase activity;2.76097494586727e-24!GO:0005730;nucleolus;3.41297689410788e-24!GO:0031980;mitochondrial lumen;5.18396230186773e-24!GO:0005759;mitochondrial matrix;5.18396230186773e-24!GO:0044445;cytosolic part;6.19897705168498e-24!GO:0022403;cell cycle phase;1.5394784430007e-23!GO:0006119;oxidative phosphorylation;1.5394784430007e-23!GO:0051276;chromosome organization and biogenesis;3.11498887107436e-23!GO:0044455;mitochondrial membrane part;1.48196350479718e-22!GO:0006457;protein folding;1.85380163801571e-22!GO:0032553;ribonucleotide binding;3.0427743612443e-22!GO:0032555;purine ribonucleotide binding;3.0427743612443e-22!GO:0017076;purine nucleotide binding;4.51256545726765e-22!GO:0005524;ATP binding;9.05440792042226e-22!GO:0015934;large ribosomal subunit;1.35701879874921e-21!GO:0032559;adenyl ribonucleotide binding;1.37080284089717e-21!GO:0030554;adenyl nucleotide binding;4.18254573979501e-21!GO:0000087;M phase of mitotic cell cycle;5.46030287442908e-21!GO:0007067;mitosis;1.46279166901826e-20!GO:0015935;small ribosomal subunit;1.84873515117396e-20!GO:0006512;ubiquitin cycle;1.03416162389699e-19!GO:0051649;establishment of cellular localization;2.98324763444092e-19!GO:0022618;protein-RNA complex assembly;3.16232024142537e-19!GO:0051641;cellular localization;6.4387812814636e-19!GO:0000279;M phase;7.35918438851792e-19!GO:0051301;cell division;8.42320061341159e-19!GO:0044265;cellular macromolecule catabolic process;2.2490240858858e-18!GO:0051186;cofactor metabolic process;4.35857734418319e-18!GO:0012505;endomembrane system;4.9314701332056e-18!GO:0005746;mitochondrial respiratory chain;5.69336028557098e-18!GO:0008134;transcription factor binding;7.95981117140721e-18!GO:0016887;ATPase activity;9.93495317834739e-18!GO:0006325;establishment and/or maintenance of chromatin architecture;1.11979105926837e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;1.67490705545002e-17!GO:0042254;ribosome biogenesis and assembly;1.72839678487799e-17!GO:0019941;modification-dependent protein catabolic process;2.93470868102574e-17!GO:0043632;modification-dependent macromolecule catabolic process;2.93470868102574e-17!GO:0044453;nuclear membrane part;3.02600349704611e-17!GO:0008135;translation factor activity, nucleic acid binding;3.09492296571788e-17!GO:0006511;ubiquitin-dependent protein catabolic process;3.24334116694818e-17!GO:0006323;DNA packaging;5.05081622961139e-17!GO:0044257;cellular protein catabolic process;5.61212397412099e-17!GO:0005635;nuclear envelope;6.58796958067486e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.17837806629387e-16!GO:0031965;nuclear membrane;1.33560604633503e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.65755814889409e-16!GO:0042623;ATPase activity, coupled;1.89912244969667e-16!GO:0005761;mitochondrial ribosome;4.16054416164581e-16!GO:0000313;organellar ribosome;4.16054416164581e-16!GO:0005783;endoplasmic reticulum;4.62264859086209e-16!GO:0050136;NADH dehydrogenase (quinone) activity;7.33987729675081e-16!GO:0003954;NADH dehydrogenase activity;7.33987729675081e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.33987729675081e-16!GO:0044248;cellular catabolic process;1.63485947795439e-15!GO:0043285;biopolymer catabolic process;1.89452972140756e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;2.0135525808732e-15!GO:0000375;RNA splicing, via transesterification reactions;2.0135525808732e-15!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.0135525808732e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.34222555766198e-15!GO:0051082;unfolded protein binding;2.58601694888884e-15!GO:0006399;tRNA metabolic process;3.6152909355517e-15!GO:0044432;endoplasmic reticulum part;3.62272141737212e-15!GO:0006732;coenzyme metabolic process;3.64589769329202e-15!GO:0006605;protein targeting;4.98706872189895e-15!GO:0005643;nuclear pore;7.92183001661764e-15!GO:0009057;macromolecule catabolic process;9.71896406309376e-15!GO:0006366;transcription from RNA polymerase II promoter;1.09955092969349e-14!GO:0000785;chromatin;2.29071235755931e-14!GO:0042775;organelle ATP synthesis coupled electron transport;2.37938505425195e-14!GO:0042773;ATP synthesis coupled electron transport;2.37938505425195e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.5061159759048e-14!GO:0051726;regulation of cell cycle;4.63964044852894e-14!GO:0004386;helicase activity;4.76046521803946e-14!GO:0050657;nucleic acid transport;5.29372579199036e-14!GO:0051236;establishment of RNA localization;5.29372579199036e-14!GO:0050658;RNA transport;5.29372579199036e-14!GO:0006403;RNA localization;6.53917191747325e-14!GO:0030964;NADH dehydrogenase complex (quinone);8.37938269379879e-14!GO:0045271;respiratory chain complex I;8.37938269379879e-14!GO:0005747;mitochondrial respiratory chain complex I;8.37938269379879e-14!GO:0000074;regulation of progression through cell cycle;9.46322940700999e-14!GO:0016604;nuclear body;1.606385092613e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.00062808131345e-13!GO:0003743;translation initiation factor activity;2.52940086467556e-13!GO:0043412;biopolymer modification;2.52940086467556e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.97318568561246e-13!GO:0006333;chromatin assembly or disassembly;4.63613706591572e-13!GO:0048770;pigment granule;6.46086876155877e-13!GO:0042470;melanosome;6.46086876155877e-13!GO:0065004;protein-DNA complex assembly;6.92024589415098e-13!GO:0030163;protein catabolic process;8.28268753407526e-13!GO:0046930;pore complex;8.72952248470932e-13!GO:0006261;DNA-dependent DNA replication;1.47352703978231e-12!GO:0006913;nucleocytoplasmic transport;1.51415833418321e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.91276211170957e-12!GO:0051169;nuclear transport;3.97491693134091e-12!GO:0006364;rRNA processing;4.15861017654714e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.21639397683461e-12!GO:0051028;mRNA transport;5.49324298061636e-12!GO:0065002;intracellular protein transport across a membrane;8.52159901794614e-12!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.79725265319543e-12!GO:0012501;programmed cell death;9.21783526475101e-12!GO:0006413;translational initiation;9.29516979197119e-12!GO:0005789;endoplasmic reticulum membrane;9.7507675637822e-12!GO:0003712;transcription cofactor activity;1.29474375812105e-11!GO:0016072;rRNA metabolic process;1.33777088672634e-11!GO:0006915;apoptosis;2.0438467969402e-11!GO:0016568;chromatin modification;3.27810831745669e-11!GO:0043566;structure-specific DNA binding;4.19603531160336e-11!GO:0008026;ATP-dependent helicase activity;4.39144637421242e-11!GO:0009055;electron carrier activity;4.57682459397253e-11!GO:0048193;Golgi vesicle transport;5.16829542127856e-11!GO:0000775;chromosome, pericentric region;7.47286269207794e-11!GO:0016607;nuclear speck;8.99156096712616e-11!GO:0006464;protein modification process;9.3766692327623e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.77764658801361e-11!GO:0004812;aminoacyl-tRNA ligase activity;9.77764658801361e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.77764658801361e-11!GO:0006446;regulation of translational initiation;1.13144663614614e-10!GO:0009259;ribonucleotide metabolic process;1.50723461512452e-10!GO:0051188;cofactor biosynthetic process;1.788364432283e-10!GO:0043038;amino acid activation;1.95899741244572e-10!GO:0006418;tRNA aminoacylation for protein translation;1.95899741244572e-10!GO:0043039;tRNA aminoacylation;1.95899741244572e-10!GO:0006163;purine nucleotide metabolic process;2.00115293249583e-10!GO:0008219;cell death;2.67459267351246e-10!GO:0016265;death;2.67459267351246e-10!GO:0003697;single-stranded DNA binding;3.45073879075406e-10!GO:0008639;small protein conjugating enzyme activity;3.68805942334378e-10!GO:0043687;post-translational protein modification;6.96671226010675e-10!GO:0004842;ubiquitin-protein ligase activity;1.07371203135138e-09!GO:0019787;small conjugating protein ligase activity;1.40051487726304e-09!GO:0006164;purine nucleotide biosynthetic process;1.66928959032907e-09!GO:0051329;interphase of mitotic cell cycle;1.8309123477017e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.18680123494098e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.2232918452967e-09!GO:0009150;purine ribonucleotide metabolic process;2.98755886851e-09!GO:0009260;ribonucleotide biosynthetic process;3.33244430162655e-09!GO:0051325;interphase;3.38378109758456e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.49137077654826e-09!GO:0015630;microtubule cytoskeleton;4.07533191598766e-09!GO:0005657;replication fork;4.14402826147965e-09!GO:0017038;protein import;4.25803486475109e-09!GO:0016779;nucleotidyltransferase activity;5.09639467568563e-09!GO:0005819;spindle;5.66680160748999e-09!GO:0009108;coenzyme biosynthetic process;6.68894605450487e-09!GO:0016787;hydrolase activity;7.74956859924931e-09!GO:0006461;protein complex assembly;1.01058302353872e-08!GO:0008565;protein transporter activity;1.01642026504946e-08!GO:0007005;mitochondrion organization and biogenesis;1.06683527118495e-08!GO:0016881;acid-amino acid ligase activity;1.11903518225746e-08!GO:0009060;aerobic respiration;1.25264990061759e-08!GO:0005667;transcription factor complex;1.4598072589488e-08!GO:0015986;ATP synthesis coupled proton transport;1.5153095096735e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.5153095096735e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.63969953330939e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.16665463411197e-08!GO:0016192;vesicle-mediated transport;2.18759895773465e-08!GO:0006334;nucleosome assembly;2.31415646791368e-08!GO:0009141;nucleoside triphosphate metabolic process;2.38891600538687e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.39999444703237e-08!GO:0045333;cellular respiration;2.44230834644592e-08!GO:0031497;chromatin assembly;3.53965713024213e-08!GO:0009056;catabolic process;4.19254701041542e-08!GO:0007051;spindle organization and biogenesis;4.54900999034346e-08!GO:0046034;ATP metabolic process;5.2479299352188e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.3118463357726e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.3118463357726e-08!GO:0005794;Golgi apparatus;5.65228501354435e-08!GO:0006752;group transfer coenzyme metabolic process;6.36367022509008e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.59427439860295e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.59427439860295e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.0800182886874e-07!GO:0006754;ATP biosynthetic process;1.36761380270328e-07!GO:0006753;nucleoside phosphate metabolic process;1.36761380270328e-07!GO:0050794;regulation of cellular process;1.39221044011773e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.40463078390832e-07!GO:0005793;ER-Golgi intermediate compartment;1.42671739727569e-07!GO:0005813;centrosome;1.43791373200355e-07!GO:0000075;cell cycle checkpoint;1.45856423124651e-07!GO:0019829;cation-transporting ATPase activity;1.58125149130667e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.89364056911777e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.89364056911777e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.98622325577837e-07!GO:0008094;DNA-dependent ATPase activity;2.08834911742268e-07!GO:0000245;spliceosome assembly;2.08834911742268e-07!GO:0006302;double-strand break repair;2.26725192195573e-07!GO:0032446;protein modification by small protein conjugation;2.369345777284e-07!GO:0016469;proton-transporting two-sector ATPase complex;2.57540594438304e-07!GO:0009117;nucleotide metabolic process;2.7777643012893e-07!GO:0016740;transferase activity;2.81465087003842e-07!GO:0016567;protein ubiquitination;3.18162444246281e-07!GO:0005815;microtubule organizing center;3.86359774142788e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.46179565392958e-07!GO:0043623;cellular protein complex assembly;5.82024921439126e-07!GO:0003682;chromatin binding;6.16431710683615e-07!GO:0006099;tricarboxylic acid cycle;6.35006787909017e-07!GO:0046356;acetyl-CoA catabolic process;6.35006787909017e-07!GO:0016564;transcription repressor activity;6.76845045990126e-07!GO:0019222;regulation of metabolic process;7.18193007391703e-07!GO:0045259;proton-transporting ATP synthase complex;8.62124485249011e-07!GO:0003899;DNA-directed RNA polymerase activity;9.16551555536436e-07!GO:0003713;transcription coactivator activity;9.25146046997531e-07!GO:0006084;acetyl-CoA metabolic process;1.01692736546346e-06!GO:0042981;regulation of apoptosis;1.21734751019777e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.22931494928156e-06!GO:0016741;transferase activity, transferring one-carbon groups;1.3106383082369e-06!GO:0031324;negative regulation of cellular metabolic process;1.3228119111519e-06!GO:0008168;methyltransferase activity;1.43608640698521e-06!GO:0043067;regulation of programmed cell death;1.44629284003562e-06!GO:0051170;nuclear import;1.83779989744279e-06!GO:0051427;hormone receptor binding;2.51694289679855e-06!GO:0000151;ubiquitin ligase complex;2.81787979453923e-06!GO:0003690;double-stranded DNA binding;2.89434019297512e-06!GO:0005768;endosome;3.24595224424995e-06!GO:0051168;nuclear export;3.36319643772976e-06!GO:0003724;RNA helicase activity;3.4078469738028e-06!GO:0008033;tRNA processing;3.44468265632751e-06!GO:0007059;chromosome segregation;4.24760357656472e-06!GO:0051052;regulation of DNA metabolic process;5.05679182520806e-06!GO:0006414;translational elongation;5.55238515257094e-06!GO:0035257;nuclear hormone receptor binding;5.84111373157659e-06!GO:0051246;regulation of protein metabolic process;6.35456237383889e-06!GO:0006606;protein import into nucleus;6.46392048491384e-06!GO:0000079;regulation of cyclin-dependent protein kinase activity;6.48324983058871e-06!GO:0004298;threonine endopeptidase activity;6.55868900117948e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.73374160831013e-06!GO:0009109;coenzyme catabolic process;7.00094519939664e-06!GO:0048523;negative regulation of cellular process;7.43542752479434e-06!GO:0016491;oxidoreductase activity;7.64818442451118e-06!GO:0006888;ER to Golgi vesicle-mediated transport;8.92832710206483e-06!GO:0016853;isomerase activity;9.0152125991257e-06!GO:0051187;cofactor catabolic process;1.27000700088716e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.36600695677663e-05!GO:0006613;cotranslational protein targeting to membrane;1.40890356747918e-05!GO:0009892;negative regulation of metabolic process;1.41214583405555e-05!GO:0006793;phosphorus metabolic process;1.59739266659201e-05!GO:0006796;phosphate metabolic process;1.59739266659201e-05!GO:0043069;negative regulation of programmed cell death;1.61921769214389e-05!GO:0030120;vesicle coat;1.62478067244707e-05!GO:0030662;coated vesicle membrane;1.62478067244707e-05!GO:0005762;mitochondrial large ribosomal subunit;1.78608652869351e-05!GO:0000315;organellar large ribosomal subunit;1.78608652869351e-05!GO:0048475;coated membrane;1.79142614143432e-05!GO:0030117;membrane coat;1.79142614143432e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.888993715053e-05!GO:0000776;kinetochore;2.01321905036892e-05!GO:0006916;anti-apoptosis;2.01321905036892e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;2.25428710522901e-05!GO:0016363;nuclear matrix;2.30490004096724e-05!GO:0008654;phospholipid biosynthetic process;2.36893532668375e-05!GO:0045786;negative regulation of progression through cell cycle;2.36893532668375e-05!GO:0043066;negative regulation of apoptosis;2.37964939381969e-05!GO:0046483;heterocycle metabolic process;2.42392549625444e-05!GO:0006352;transcription initiation;2.48982543428268e-05!GO:0006091;generation of precursor metabolites and energy;2.57621523437183e-05!GO:0016859;cis-trans isomerase activity;2.8355106514165e-05!GO:0016563;transcription activator activity;3.0668388143458e-05!GO:0006310;DNA recombination;3.28277506581253e-05!GO:0000314;organellar small ribosomal subunit;3.2971561822084e-05!GO:0005763;mitochondrial small ribosomal subunit;3.2971561822084e-05!GO:0003684;damaged DNA binding;3.87843195904709e-05!GO:0006270;DNA replication initiation;4.00268450402993e-05!GO:0044452;nucleolar part;4.36285590544344e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;4.36455989087555e-05!GO:0004527;exonuclease activity;4.5117835045422e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;5.14208109553656e-05!GO:0019752;carboxylic acid metabolic process;5.80194327681166e-05!GO:0003714;transcription corepressor activity;5.95532908978832e-05!GO:0031323;regulation of cellular metabolic process;5.9854213808879e-05!GO:0006082;organic acid metabolic process;7.23905493139821e-05!GO:0000786;nucleosome;8.34090016662433e-05!GO:0000059;protein import into nucleus, docking;8.57362219331659e-05!GO:0007052;mitotic spindle organization and biogenesis;0.000102486673426357!GO:0008186;RNA-dependent ATPase activity;0.000102660099177475!GO:0005788;endoplasmic reticulum lumen;0.000103426400438812!GO:0006402;mRNA catabolic process;0.000107832502262422!GO:0004518;nuclease activity;0.000112419322770887!GO:0016310;phosphorylation;0.000115055859576054!GO:0003729;mRNA binding;0.000121381568248391!GO:0005770;late endosome;0.000124504416748668!GO:0043021;ribonucleoprotein binding;0.000133414808056028!GO:0003924;GTPase activity;0.00013848122597067!GO:0048519;negative regulation of biological process;0.000139901102353644!GO:0043596;nuclear replication fork;0.000141071167853031!GO:0007088;regulation of mitosis;0.000147776633115705!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000147776633115705!GO:0015399;primary active transmembrane transporter activity;0.000147776633115705!GO:0009165;nucleotide biosynthetic process;0.000157593387129352!GO:0032508;DNA duplex unwinding;0.000159020670290566!GO:0032392;DNA geometric change;0.000159020670290566!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000161920614680818!GO:0045454;cell redox homeostasis;0.000178854294239578!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000179638210866829!GO:0006839;mitochondrial transport;0.000184370722670568!GO:0000049;tRNA binding;0.000193029075264218!GO:0003678;DNA helicase activity;0.00019799626761855!GO:0016481;negative regulation of transcription;0.000209846440352477!GO:0048471;perinuclear region of cytoplasm;0.000216341436246039!GO:0006284;base-excision repair;0.000221999526323814!GO:0050789;regulation of biological process;0.000233458384032997!GO:0031072;heat shock protein binding;0.000255326448429291!GO:0006612;protein targeting to membrane;0.000258145690186063!GO:0043681;protein import into mitochondrion;0.000269510166469555!GO:0015980;energy derivation by oxidation of organic compounds;0.000270759132492874!GO:0044440;endosomal part;0.000287225063179002!GO:0010008;endosome membrane;0.000287225063179002!GO:0006350;transcription;0.000287810401940985!GO:0004004;ATP-dependent RNA helicase activity;0.000297289592191144!GO:0051252;regulation of RNA metabolic process;0.000301656124927127!GO:0005798;Golgi-associated vesicle;0.000340302895821572!GO:0006268;DNA unwinding during replication;0.000352808608615611!GO:0009112;nucleobase metabolic process;0.000352808608615611!GO:0003702;RNA polymerase II transcription factor activity;0.000362730233041196!GO:0006950;response to stress;0.000372979608895923!GO:0006626;protein targeting to mitochondrion;0.000423076664334719!GO:0006275;regulation of DNA replication;0.000423076664334719!GO:0000228;nuclear chromosome;0.00043948683222735!GO:0051789;response to protein stimulus;0.000493832584575133!GO:0006986;response to unfolded protein;0.000493832584575133!GO:0005791;rough endoplasmic reticulum;0.000497027726511576!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000497565193432108!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000509097036986096!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000509623241436135!GO:0006401;RNA catabolic process;0.000524279974541838!GO:0043601;nuclear replisome;0.000524279974541838!GO:0030894;replisome;0.000524279974541838!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000529215472135563!GO:0042802;identical protein binding;0.000529483968041339!GO:0051920;peroxiredoxin activity;0.000535233667871102!GO:0005684;U2-dependent spliceosome;0.000536524109362304!GO:0030880;RNA polymerase complex;0.000567753620953921!GO:0046474;glycerophospholipid biosynthetic process;0.000569718709120894!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.000599246429269602!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000622763669167517!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000633252321591768!GO:0030867;rough endoplasmic reticulum membrane;0.000651901315634533!GO:0003711;transcription elongation regulator activity;0.000663546611478888!GO:0006405;RNA export from nucleus;0.000681748461284732!GO:0050662;coenzyme binding;0.00068326462608212!GO:0019867;outer membrane;0.000732180557852879!GO:0016251;general RNA polymerase II transcription factor activity;0.000747204482126433!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000839571023300397!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000839571023300397!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000839571023300397!GO:0031968;organelle outer membrane;0.000854725427800879!GO:0000082;G1/S transition of mitotic cell cycle;0.000915869825027882!GO:0005048;signal sequence binding;0.000922621788995471!GO:0015631;tubulin binding;0.000924368481185902!GO:0046489;phosphoinositide biosynthetic process;0.00096778829228153!GO:0000922;spindle pole;0.000986526501761017!GO:0015992;proton transport;0.00100389884067016!GO:0003746;translation elongation factor activity;0.0010522092931149!GO:0000096;sulfur amino acid metabolic process;0.00111391055967004!GO:0006818;hydrogen transport;0.0011730634073818!GO:0019899;enzyme binding;0.00118369246798817!GO:0048522;positive regulation of cellular process;0.00120175802463798!GO:0043492;ATPase activity, coupled to movement of substances;0.00124111968593135!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00126545658558381!GO:0000428;DNA-directed RNA polymerase complex;0.00126545658558381!GO:0005637;nuclear inner membrane;0.00127384828818214!GO:0007093;mitotic cell cycle checkpoint;0.00127936742663092!GO:0005876;spindle microtubule;0.00135861137578835!GO:0035258;steroid hormone receptor binding;0.00136716778273917!GO:0006383;transcription from RNA polymerase III promoter;0.00137668963132408!GO:0033116;ER-Golgi intermediate compartment membrane;0.0014179276193622!GO:0065009;regulation of a molecular function;0.00142753734591803!GO:0006520;amino acid metabolic process;0.00142845695914141!GO:0030521;androgen receptor signaling pathway;0.00147803915191569!GO:0000725;recombinational repair;0.00147905069909927!GO:0000724;double-strand break repair via homologous recombination;0.00147905069909927!GO:0043414;biopolymer methylation;0.00148108674221619!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00150014496531653!GO:0042770;DNA damage response, signal transduction;0.00151500132821809!GO:0048487;beta-tubulin binding;0.00152153787451141!GO:0043284;biopolymer biosynthetic process;0.00152311159389429!GO:0048037;cofactor binding;0.00152311159389429!GO:0010468;regulation of gene expression;0.00163405020090744!GO:0032259;methylation;0.00165775395014298!GO:0006289;nucleotide-excision repair;0.00170339535341079!GO:0008022;protein C-terminus binding;0.00172163134535329!GO:0000819;sister chromatid segregation;0.00176011116271282!GO:0008312;7S RNA binding;0.00178067104323253!GO:0019843;rRNA binding;0.00178067104323253!GO:0042393;histone binding;0.00179219260504077!GO:0004674;protein serine/threonine kinase activity;0.00183456020266158!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00184516741493431!GO:0007050;cell cycle arrest;0.00194376376597016!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00196729406326219!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00196729406326219!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00196729406326219!GO:0048500;signal recognition particle;0.00198049399225062!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0020440998743115!GO:0005874;microtubule;0.00206847633407334!GO:0000070;mitotic sister chromatid segregation;0.00209552449135943!GO:0031124;mRNA 3'-end processing;0.00224364733725647!GO:0031252;leading edge;0.00225568446230152!GO:0022890;inorganic cation transmembrane transporter activity;0.00226534301127273!GO:0008276;protein methyltransferase activity;0.00226534301127273!GO:0006611;protein export from nucleus;0.00230968780016415!GO:0043488;regulation of mRNA stability;0.00240130039760324!GO:0043487;regulation of RNA stability;0.00240130039760324!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0024506764512757!GO:0006144;purine base metabolic process;0.00254076070122705!GO:0005885;Arp2/3 protein complex;0.00254391070028763!GO:0007017;microtubule-based process;0.002547144390964!GO:0051087;chaperone binding;0.00259481077594225!GO:0005741;mitochondrial outer membrane;0.00261796283468449!GO:0009116;nucleoside metabolic process;0.00269761613878722!GO:0006595;polyamine metabolic process;0.00282482768395341!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00285713885921431!GO:0032200;telomere organization and biogenesis;0.00292543454162574!GO:0000723;telomere maintenance;0.00292543454162574!GO:0006367;transcription initiation from RNA polymerase II promoter;0.00296095814824875!GO:0008408;3'-5' exonuclease activity;0.00298376841356883!GO:0008250;oligosaccharyl transferase complex;0.00307816451524899!GO:0007006;mitochondrial membrane organization and biogenesis;0.00322834520901336!GO:0005525;GTP binding;0.00332388328051409!GO:0006338;chromatin remodeling;0.00376986265466151!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00377575418861042!GO:0046983;protein dimerization activity;0.0038402439576927!GO:0031570;DNA integrity checkpoint;0.00395056546864108!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00422146399343724!GO:0016272;prefoldin complex;0.00427122190090876!GO:0007010;cytoskeleton organization and biogenesis;0.00427504681219417!GO:0008139;nuclear localization sequence binding;0.00427504681219417!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00430095890267246!GO:0009451;RNA modification;0.00432365116384229!GO:0051287;NAD binding;0.00437250421351587!GO:0051540;metal cluster binding;0.00437250421351587!GO:0051536;iron-sulfur cluster binding;0.00437250421351587!GO:0005769;early endosome;0.00445129972270051!GO:0005773;vacuole;0.00455971991962!GO:0004576;oligosaccharyl transferase activity;0.00459425247193358!GO:0030176;integral to endoplasmic reticulum membrane;0.00466245363415662!GO:0000086;G2/M transition of mitotic cell cycle;0.00476674395110702!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00491658580900444!GO:0045047;protein targeting to ER;0.00491658580900444!GO:0051053;negative regulation of DNA metabolic process;0.00496321556742822!GO:0005669;transcription factor TFIID complex;0.00497260334540218!GO:0045892;negative regulation of transcription, DNA-dependent;0.00564778572805144!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00570748934615189!GO:0005663;DNA replication factor C complex;0.00580855893219204!GO:0032774;RNA biosynthetic process;0.00585508021728831!GO:0006506;GPI anchor biosynthetic process;0.00602265385613143!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00608999512850231!GO:0003677;DNA binding;0.00621835258279342!GO:0031123;RNA 3'-end processing;0.00622683504045154!GO:0044431;Golgi apparatus part;0.00641274677822168!GO:0000792;heterochromatin;0.00646779060058232!GO:0044454;nuclear chromosome part;0.00651587450406888!GO:0046966;thyroid hormone receptor binding;0.00674622237817371!GO:0008361;regulation of cell size;0.00679089797743604!GO:0006351;transcription, DNA-dependent;0.0072437482262792!GO:0040029;regulation of gene expression, epigenetic;0.0072437482262792!GO:0000178;exosome (RNase complex);0.00739154004624095!GO:0000287;magnesium ion binding;0.00753809128944718!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00809737544127258!GO:0000339;RNA cap binding;0.00815615201413518!GO:0006378;mRNA polyadenylation;0.00854654587184725!GO:0043022;ribosome binding;0.00872720984411268!GO:0006376;mRNA splice site selection;0.00885854449171068!GO:0000389;nuclear mRNA 3'-splice site recognition;0.00885854449171068!GO:0031988;membrane-bound vesicle;0.00913258355955986!GO:0006505;GPI anchor metabolic process;0.00915325643551031!GO:0019783;small conjugating protein-specific protease activity;0.00918105160167699!GO:0008234;cysteine-type peptidase activity;0.00930781879527782!GO:0008632;apoptotic program;0.00936531778118689!GO:0030132;clathrin coat of coated pit;0.00938187324990567!GO:0005832;chaperonin-containing T-complex;0.00943112432083765!GO:0007004;telomere maintenance via telomerase;0.0094647811722322!GO:0000781;chromosome, telomeric region;0.00947967490375503!GO:0006400;tRNA modification;0.00947967490375503!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00947967490375503!GO:0006650;glycerophospholipid metabolic process;0.00952251442166447!GO:0030658;transport vesicle membrane;0.00956947753121743!GO:0006417;regulation of translation;0.00964558998047251!GO:0043065;positive regulation of apoptosis;0.00971120647502723!GO:0003887;DNA-directed DNA polymerase activity;0.00977927223214988!GO:0006519;amino acid and derivative metabolic process;0.00980161633210046!GO:0008017;microtubule binding;0.00981139143444453!GO:0046467;membrane lipid biosynthetic process;0.00991658694497406!GO:0016049;cell growth;0.0101760475650191!GO:0003725;double-stranded RNA binding;0.0101760475650191!GO:0030384;phosphoinositide metabolic process;0.0103094506119611!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0104493282186533!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0105896558235007!GO:0006891;intra-Golgi vesicle-mediated transport;0.0105896558235007!GO:0050681;androgen receptor binding;0.0106756780285286!GO:0004523;ribonuclease H activity;0.0107097458794055!GO:0043624;cellular protein complex disassembly;0.0107963552958688!GO:0006118;electron transport;0.0109845730891585!GO:0030663;COPI coated vesicle membrane;0.0110432294622242!GO:0030126;COPI vesicle coat;0.0110432294622242!GO:0008180;signalosome;0.0113065687212255!GO:0016126;sterol biosynthetic process;0.0113065687212255!GO:0016790;thiolester hydrolase activity;0.0113292313561055!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0114556126375477!GO:0015002;heme-copper terminal oxidase activity;0.0114556126375477!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0114556126375477!GO:0004129;cytochrome-c oxidase activity;0.0114556126375477!GO:0000323;lytic vacuole;0.0114702475209773!GO:0005764;lysosome;0.0114702475209773!GO:0006497;protein amino acid lipidation;0.0115565249885268!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0116178209285385!GO:0016197;endosome transport;0.0119573191343703!GO:0004843;ubiquitin-specific protease activity;0.0120724840630673!GO:0004003;ATP-dependent DNA helicase activity;0.0125257153350555!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0125257153350555!GO:0045893;positive regulation of transcription, DNA-dependent;0.0125257153350555!GO:0009124;nucleoside monophosphate biosynthetic process;0.0126850059641927!GO:0009123;nucleoside monophosphate metabolic process;0.0126850059641927!GO:0043068;positive regulation of programmed cell death;0.0127548001584562!GO:0018196;peptidyl-asparagine modification;0.0130391881769729!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0130391881769729!GO:0007034;vacuolar transport;0.0130391881769729!GO:0016023;cytoplasmic membrane-bound vesicle;0.013156206669406!GO:0008170;N-methyltransferase activity;0.0136756888962974!GO:0009889;regulation of biosynthetic process;0.0138715720608934!GO:0001889;liver development;0.0141616772703785!GO:0030518;steroid hormone receptor signaling pathway;0.0141763420800568!GO:0001558;regulation of cell growth;0.0143397864752526!GO:0000910;cytokinesis;0.0144267693667721!GO:0006007;glucose catabolic process;0.0144872921581872!GO:0016788;hydrolase activity, acting on ester bonds;0.0146179563709391!GO:0005869;dynactin complex;0.0146919322953834!GO:0043433;negative regulation of transcription factor activity;0.0152479287328233!GO:0009119;ribonucleoside metabolic process;0.0154281223701237!GO:0006730;one-carbon compound metabolic process;0.015516160018252!GO:0030137;COPI-coated vesicle;0.0157996498575862!GO:0008652;amino acid biosynthetic process;0.0158372596730814!GO:0006695;cholesterol biosynthetic process;0.0158372596730814!GO:0005758;mitochondrial intermembrane space;0.0158882370424776!GO:0000097;sulfur amino acid biosynthetic process;0.0159271273272637!GO:0022411;cellular component disassembly;0.0160540942045862!GO:0005905;coated pit;0.0160742846241013!GO:0030660;Golgi-associated vesicle membrane;0.0161898229206714!GO:0030118;clathrin coat;0.01630563401322!GO:0031326;regulation of cellular biosynthetic process;0.016365517569692!GO:0006213;pyrimidine nucleoside metabolic process;0.0170139297518426!GO:0008156;negative regulation of DNA replication;0.0170781797142953!GO:0005658;alpha DNA polymerase:primase complex;0.0170934901001066!GO:0032561;guanyl ribonucleotide binding;0.0172202540613409!GO:0019001;guanyl nucleotide binding;0.0172202540613409!GO:0000726;non-recombinational repair;0.0173045701440094!GO:0008637;apoptotic mitochondrial changes;0.0174053441249544!GO:0045941;positive regulation of transcription;0.0175748689452746!GO:0008610;lipid biosynthetic process;0.0177158292970656!GO:0004221;ubiquitin thiolesterase activity;0.0177339016118694!GO:0033673;negative regulation of kinase activity;0.0184420461174074!GO:0006469;negative regulation of protein kinase activity;0.0184420461174074!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0186074639549629!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0186590912370054!GO:0000077;DNA damage checkpoint;0.0189740937000363!GO:0051059;NF-kappaB binding;0.0189740937000363!GO:0006767;water-soluble vitamin metabolic process;0.0190322751688674!GO:0042054;histone methyltransferase activity;0.0192091088126628!GO:0017166;vinculin binding;0.01942132393698!GO:0051539;4 iron, 4 sulfur cluster binding;0.0195989688469255!GO:0046982;protein heterodimerization activity;0.0199955903849895!GO:0032984;macromolecular complex disassembly;0.0201301640948012!GO:0007346;regulation of progression through mitotic cell cycle;0.0201673844250452!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0203289701516729!GO:0033170;DNA-protein loading ATPase activity;0.0203537826199377!GO:0003689;DNA clamp loader activity;0.0203537826199377!GO:0006596;polyamine biosynthetic process;0.0206469964605756!GO:0006541;glutamine metabolic process;0.0206541307831523!GO:0046112;nucleobase biosynthetic process;0.0208995934677439!GO:0031982;vesicle;0.0209255983892293!GO:0006360;transcription from RNA polymerase I promoter;0.0211448900306548!GO:0045936;negative regulation of phosphate metabolic process;0.021496686081349!GO:0030134;ER to Golgi transport vesicle;0.0217612799375244!GO:0035267;NuA4 histone acetyltransferase complex;0.0218256010772403!GO:0004532;exoribonuclease activity;0.0221705110054928!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0221705110054928!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.022387162753363!GO:0050790;regulation of catalytic activity;0.0226344887638788!GO:0008538;proteasome activator activity;0.0226861748177792!GO:0007021;tubulin folding;0.0229568976935631!GO:0051320;S phase;0.0229868540882213!GO:0006354;RNA elongation;0.0233224334731706!GO:0006301;postreplication repair;0.0233449808654678!GO:0016407;acetyltransferase activity;0.024014786993108!GO:0051716;cellular response to stimulus;0.0240621494013437!GO:0006733;oxidoreduction coenzyme metabolic process;0.0242258250954138!GO:0000793;condensed chromosome;0.0242463283059937!GO:0051348;negative regulation of transferase activity;0.0244193700276297!GO:0000080;G1 phase of mitotic cell cycle;0.0244345484403604!GO:0044450;microtubule organizing center part;0.0247106526735918!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0249233797881472!GO:0010257;NADH dehydrogenase complex assembly;0.0249233797881472!GO:0033108;mitochondrial respiratory chain complex assembly;0.0249233797881472!GO:0042158;lipoprotein biosynthetic process;0.0249233797881472!GO:0030433;ER-associated protein catabolic process;0.0249430693716516!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0249430693716516!GO:0043189;H4/H2A histone acetyltransferase complex;0.0249430693716516!GO:0016044;membrane organization and biogenesis;0.0250235833647932!GO:0006406;mRNA export from nucleus;0.0253025757371401!GO:0030503;regulation of cell redox homeostasis;0.0260586258738551!GO:0004536;deoxyribonuclease activity;0.0260586258738551!GO:0030508;thiol-disulfide exchange intermediate activity;0.0261059969571414!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0261786938920786!GO:0043241;protein complex disassembly;0.0264020594878735!GO:0008097;5S rRNA binding;0.026421951782791!GO:0009161;ribonucleoside monophosphate metabolic process;0.0264924007839617!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0264924007839617!GO:0005862;muscle thin filament tropomyosin;0.0265541465377961!GO:0045792;negative regulation of cell size;0.0272112790589762!GO:0045449;regulation of transcription;0.0272284928070211!GO:0047485;protein N-terminus binding;0.0272906653453578!GO:0048518;positive regulation of biological process;0.0272933053074643!GO:0005487;nucleocytoplasmic transporter activity;0.0274748851944465!GO:0051338;regulation of transferase activity;0.0284490245337797!GO:0000084;S phase of mitotic cell cycle;0.029300927662297!GO:0004860;protein kinase inhibitor activity;0.029300927662297!GO:0019206;nucleoside kinase activity;0.0307510652010768!GO:0004659;prenyltransferase activity;0.0308877317718333!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0310891001070549!GO:0031410;cytoplasmic vesicle;0.0313235178307572!GO:0006458;'de novo' protein folding;0.0313451681671741!GO:0051084;'de novo' posttranslational protein folding;0.0313451681671741!GO:0022406;membrane docking;0.0313996939803968!GO:0048278;vesicle docking;0.0313996939803968!GO:0007243;protein kinase cascade;0.031762034301006!GO:0005996;monosaccharide metabolic process;0.0320140281783584!GO:0019318;hexose metabolic process;0.0322658612356089!GO:0016279;protein-lysine N-methyltransferase activity;0.0323907551635364!GO:0018024;histone-lysine N-methyltransferase activity;0.0323907551635364!GO:0016278;lysine N-methyltransferase activity;0.0323907551635364!GO:0043549;regulation of kinase activity;0.0324664106546648!GO:0006740;NADPH regeneration;0.0326498919437077!GO:0006098;pentose-phosphate shunt;0.0326498919437077!GO:0044438;microbody part;0.0326498919437077!GO:0044439;peroxisomal part;0.0326498919437077!GO:0032039;integrator complex;0.0328983728558599!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0335484425900453!GO:0030174;regulation of DNA replication initiation;0.0337893001161085!GO:0031577;spindle checkpoint;0.0338995549667317!GO:0016408;C-acyltransferase activity;0.0340233647311622!GO:0030308;negative regulation of cell growth;0.0340681345428556!GO:0031970;organelle envelope lumen;0.0341619259749121!GO:0007041;lysosomal transport;0.0341628711804583!GO:0017134;fibroblast growth factor binding;0.0346897918402792!GO:0043631;RNA polyadenylation;0.0351148650577043!GO:0006564;L-serine biosynthetic process;0.035455050389955!GO:0000118;histone deacetylase complex;0.0355780079329166!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0356112064145445!GO:0005784;translocon complex;0.0360060441295716!GO:0031902;late endosome membrane;0.0362035396348701!GO:0000152;nuclear ubiquitin ligase complex;0.0362428482183189!GO:0004722;protein serine/threonine phosphatase activity;0.0362428482183189!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0366154177124032!GO:0045039;protein import into mitochondrial inner membrane;0.0366154177124032!GO:0030127;COPII vesicle coat;0.0369734080062699!GO:0012507;ER to Golgi transport vesicle membrane;0.0369734080062699!GO:0009303;rRNA transcription;0.0370404402225056!GO:0031529;ruffle organization and biogenesis;0.0370871288907532!GO:0000139;Golgi membrane;0.037117919252462!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0371294179695158!GO:0030659;cytoplasmic vesicle membrane;0.0381862162749244!GO:0051297;centrosome organization and biogenesis;0.0382905376418755!GO:0031023;microtubule organizing center organization and biogenesis;0.0382905376418755!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0387409777302979!GO:0006509;membrane protein ectodomain proteolysis;0.0388530445726978!GO:0033619;membrane protein proteolysis;0.0388530445726978!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.038974531194978!GO:0003923;GPI-anchor transamidase activity;0.038974531194978!GO:0016255;attachment of GPI anchor to protein;0.038974531194978!GO:0042765;GPI-anchor transamidase complex;0.038974531194978!GO:0008629;induction of apoptosis by intracellular signals;0.0392123544284923!GO:0031625;ubiquitin protein ligase binding;0.039757178710386!GO:0000123;histone acetyltransferase complex;0.039757178710386!GO:0006984;ER-nuclear signaling pathway;0.039757178710386!GO:0032405;MutLalpha complex binding;0.0399351951289095!GO:0040008;regulation of growth;0.0399351951289095!GO:0030119;AP-type membrane coat adaptor complex;0.0402104554095111!GO:0016791;phosphoric monoester hydrolase activity;0.0402163793036017!GO:0000209;protein polyubiquitination;0.0405187430551982!GO:0004520;endodeoxyribonuclease activity;0.0409700303433807!GO:0006739;NADP metabolic process;0.0414075414092653!GO:0046128;purine ribonucleoside metabolic process;0.0417353894762688!GO:0042278;purine nucleoside metabolic process;0.0417353894762688!GO:0006379;mRNA cleavage;0.0421379414072293!GO:0030131;clathrin adaptor complex;0.0422739256309884!GO:0009067;aspartate family amino acid biosynthetic process;0.0425411451887112!GO:0045736;negative regulation of cyclin-dependent protein kinase activity;0.0435514431303533!GO:0006278;RNA-dependent DNA replication;0.0435650498154962!GO:0006904;vesicle docking during exocytosis;0.0436681160667342!GO:0042326;negative regulation of phosphorylation;0.0438425124492702!GO:0006220;pyrimidine nucleotide metabolic process;0.0438693952270041!GO:0051098;regulation of binding;0.0438693952270041!GO:0045502;dynein binding;0.044169220192709!GO:0046519;sphingoid metabolic process;0.044169220192709!GO:0015036;disulfide oxidoreductase activity;0.044169220192709!GO:0000030;mannosyltransferase activity;0.044213355634437!GO:0008426;protein kinase C inhibitor activity;0.0447440147009097!GO:0006778;porphyrin metabolic process;0.0448930346234004!GO:0033013;tetrapyrrole metabolic process;0.0448930346234004!GO:0009113;purine base biosynthetic process;0.0457267723058599!GO:0051318;G1 phase;0.0458857784555101!GO:0006779;porphyrin biosynthetic process;0.0460174831436629!GO:0033014;tetrapyrrole biosynthetic process;0.0460174831436629!GO:0009066;aspartate family amino acid metabolic process;0.0460383836940055!GO:0045859;regulation of protein kinase activity;0.0460383836940055!GO:0044262;cellular carbohydrate metabolic process;0.046095326874228!GO:0043154;negative regulation of caspase activity;0.046838789319009!GO:0000303;response to superoxide;0.046951392079438!GO:0031903;microbody membrane;0.0469676110325722!GO:0005778;peroxisomal membrane;0.0469676110325722!GO:0031371;ubiquitin conjugating enzyme complex;0.0469676110325722!GO:0050811;GABA receptor binding;0.0473687002692143!GO:0004087;carbamoyl-phosphate synthase (ammonia) activity;0.0476658217962262!GO:0032404;mismatch repair complex binding;0.0478352211104473!GO:0008537;proteasome activator complex;0.0481528043884558!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0484120719692638!GO:0001836;release of cytochrome c from mitochondria;0.048659087526453!GO:0000731;DNA synthesis during DNA repair;0.04893380206161!GO:0030125;clathrin vesicle coat;0.0495954514350779!GO:0030665;clathrin coated vesicle membrane;0.0495954514350779 | |||
|sample_id=10816 | |sample_id=10816 | ||
|sample_note= | |sample_note= | ||
|sample_sex=female | |sample_sex=female | ||
|sample_species= | |sample_species=Human (Homo sapiens) | ||
|sample_strain= | |sample_strain= | ||
|sample_tissue=cervix | |sample_tissue=cervix | ||
|top_motifs=E2F1..5:2.28160743631;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.89816123872;FOXD3:1.81058899393;FOXQ1:1.7559412299;TFDP1:1.64922241947;ELK1,4_GABP{A,B1}:1.63627854827;ESRRA:1.4583594867;NFY{A,B,C}:1.45519499541;YY1:1.44213087534;POU2F1..3:1.35885966782;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.35634579717;ZNF143:1.28808140813;ZNF148:1.26407020795;NRF1:1.25412759024;HOX{A6,A7,B6,B7}:1.209152106;PAX8:1.19101926202;MYB:1.0744796839;PITX1..3:1.04806705548;FOX{I1,J2}:1.00614514713;bHLH_family:0.905565933895;HBP1_HMGB_SSRP1_UBTF:0.881651041904;ARID5B:0.865297843223;VSX1,2:0.822806033733;GFI1:0.797148459652;PPARG:0.792561658368;TOPORS:0.783194942583;PAX1,9:0.777713355476;BREu{core}:0.747572663608;FOXN1:0.665801946383;ZBTB16:0.66017387814;SOX{8,9,10}:0.643863966034;NR5A1,2:0.634967960781;NFIX:0.568436049432;PBX1:0.537568499642;HNF4A_NR2F1,2:0.530650659851;CUX2:0.520052505159;AIRE:0.519792488766;TEF:0.507726664411;ELF1,2,4:0.50548713449;PAX3,7:0.483999603653;RFX2..5_RFXANK_RFXAP:0.460427546932;CEBPA,B_DDIT3:0.457521620554;POU1F1:0.456162972319;NKX2-1,4:0.446718305944;TLX2:0.440370225211;IKZF1:0.429203817813;ZNF384:0.427851830069;NKX3-2:0.410374442399;NR6A1:0.375900815232;CDX1,2,4:0.37322401344;POU3F1..4:0.372808163423;TEAD1:0.322118915754;FOX{F1,F2,J1}:0.304703126847;RORA:0.29721882033;FOXA2:0.294872204488;FOXM1:0.293967724556;NKX3-1:0.279821382368;GTF2A1,2:0.276186304653;ATF5_CREB3:0.256190236392;ATF4:0.250118824097;CREB1:0.246615345785;ZEB1:0.232748688476;BPTF:0.223033524617;NFE2L2:0.209922377725;SNAI1..3:0.181737034033;PAX4:0.179007110439;IRF7:0.167564515679;OCT4_SOX2{dimer}:0.158590500108;HES1:0.154339828158;FOXP1:0.133743594125;NR1H4:0.133640263162;HLF:0.125179233537;STAT5{A,B}:0.106693225081;FOXL1:0.0828621930512;AHR_ARNT_ARNT2:0.0796354693807;AR:0.0688201602156;MYOD1:0.0623203325947;PRRX1,2:0.0616698803593;NFE2:0.0568484159315;HOX{A5,B5}:0.0555606599267;HOXA9_MEIS1:0.0502988260453;NFE2L1:0.0252509404857;EVI1:0.0203018182099;PDX1:-0.0536955282653;HIF1A:-0.0632208840636;PAX2:-0.0660936534776;NKX6-1,2:-0.0697070749073;ZNF423:-0.0818625193825;HNF1A:-0.0823124151554;EN1,2:-0.0857084451917;POU5F1:-0.0890931714343;GZF1:-0.10145698231;FOS_FOS{B,L1}_JUN{B,D}:-0.119353602518;POU6F1:-0.121029928958;JUN:-0.123097145255;ALX1:-0.123426801697;UFEwm:-0.128506260662;GATA6:-0.136540004663;BACH2:-0.13881102344;RBPJ:-0.139087200234;DBP:-0.142913860736;RXRA_VDR{dimer}:-0.145660311032;TBX4,5:-0.167130857001;CDC5L:-0.168448826442;TLX1..3_NFIC{dimer}:-0.168640740641;LHX3,4:-0.168900254;EP300:-0.169634174607;GFI1B:-0.178864160861;LMO2:-0.187199529499;GCM1,2:-0.188447112509;IKZF2:-0.193898193222;ZFP161:-0.208370263907;RFX1:-0.218002172022;FOSL2:-0.222133266227;FOXO1,3,4:-0.229683141111;FOXP3:-0.236682190717;LEF1_TCF7_TCF7L1,2:-0.258323622376;MTF1:-0.266642579503;STAT2,4,6:-0.279584966019;STAT1,3:-0.302258269009;NFKB1_REL_RELA:-0.312159429766;MED-1{core}:-0.319047872153;TBP:-0.320479648544;KLF4:-0.325694060309;ONECUT1,2:-0.329555766478;NANOG:-0.330262924078;MYBL2:-0.337515453147;ZBTB6:-0.343681806299;XCPE1{core}:-0.356723724829;MEF2{A,B,C,D}:-0.358881895082;SREBF1,2:-0.379084749599;TFAP2{A,C}:-0.388097121382;TP53:-0.391577852931;CRX:-0.392110523869;FOX{D1,D2}:-0.399009600484;DMAP1_NCOR{1,2}_SMARC:-0.404651131786;RXR{A,B,G}:-0.408655175858;HOX{A4,D4}:-0.415826771294;SOX5:-0.436376952202;EBF1:-0.454189177066;SPIB:-0.454448891423;TFAP2B:-0.458922150704;HMGA1,2:-0.46975680265;GTF2I:-0.471482316836;HIC1:-0.471537483702;ADNP_IRX_SIX_ZHX:-0.489466901621;ALX4:-0.495531446364;GLI1..3:-0.514779163106;SPI1:-0.516891119492;PAX5:-0.522522552182;TAL1_TCF{3,4,12}:-0.52422771749;ESR1:-0.566128447167;REST:-0.57964548111;SOX2:-0.602844223609;HAND1,2:-0.614965238139;NFIL3:-0.638824547771;PRDM1:-0.657092774919;EGR1..3:-0.659167214718;HSF1,2:-0.68346532696;PATZ1:-0.684615001111;RUNX1..3:-0.687953736614;NR3C1:-0.694528526107;IRF1,2:-0.718451508733;ETS1,2:-0.722807172109;SP1:-0.74007571759;MAZ:-0.743315137436;NHLH1,2:-0.77969576485;GATA4:-0.781600434647;SOX17:-0.828420476435;PAX6:-0.846484553826;RREB1:-0.849034047205;MTE{core}:-0.859291631485;NANOG{mouse}:-0.933681346809;ZIC1..3:-0.94215942108;NKX2-3_NKX2-5:-0.951307672029;ATF2:-0.959866464966;MYFfamily:-1.00439025223;NKX2-2,8:-1.0078227963;SRF:-1.0349868312;TFCP2:-1.0579899385;MAFB:-1.06513870616;MZF1:-1.11116148826;T:-1.12254066754;TGIF1:-1.14767999466;NFATC1..3:-1.17471110946;ZNF238:-1.25158334561;XBP1:-1.36272310687;TFAP4:-1.4358179151;ATF6:-1.45622821923;SMAD1..7,9:-1.76198189913;HMX1:-2.20582487259;SPZ1:-2.329122408 | |top_motifs=E2F1..5:2.28160743631;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.89816123872;FOXD3:1.81058899393;FOXQ1:1.7559412299;TFDP1:1.64922241947;ELK1,4_GABP{A,B1}:1.63627854827;ESRRA:1.4583594867;NFY{A,B,C}:1.45519499541;YY1:1.44213087534;POU2F1..3:1.35885966782;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.35634579717;ZNF143:1.28808140813;ZNF148:1.26407020795;NRF1:1.25412759024;HOX{A6,A7,B6,B7}:1.209152106;PAX8:1.19101926202;MYB:1.0744796839;PITX1..3:1.04806705548;FOX{I1,J2}:1.00614514713;bHLH_family:0.905565933895;HBP1_HMGB_SSRP1_UBTF:0.881651041904;ARID5B:0.865297843223;VSX1,2:0.822806033733;GFI1:0.797148459652;PPARG:0.792561658368;TOPORS:0.783194942583;PAX1,9:0.777713355476;BREu{core}:0.747572663608;FOXN1:0.665801946383;ZBTB16:0.66017387814;SOX{8,9,10}:0.643863966034;NR5A1,2:0.634967960781;NFIX:0.568436049432;PBX1:0.537568499642;HNF4A_NR2F1,2:0.530650659851;CUX2:0.520052505159;AIRE:0.519792488766;TEF:0.507726664411;ELF1,2,4:0.50548713449;PAX3,7:0.483999603653;RFX2..5_RFXANK_RFXAP:0.460427546932;CEBPA,B_DDIT3:0.457521620554;POU1F1:0.456162972319;NKX2-1,4:0.446718305944;TLX2:0.440370225211;IKZF1:0.429203817813;ZNF384:0.427851830069;NKX3-2:0.410374442399;NR6A1:0.375900815232;CDX1,2,4:0.37322401344;POU3F1..4:0.372808163423;TEAD1:0.322118915754;FOX{F1,F2,J1}:0.304703126847;RORA:0.29721882033;FOXA2:0.294872204488;FOXM1:0.293967724556;NKX3-1:0.279821382368;GTF2A1,2:0.276186304653;ATF5_CREB3:0.256190236392;ATF4:0.250118824097;CREB1:0.246615345785;ZEB1:0.232748688476;BPTF:0.223033524617;NFE2L2:0.209922377725;SNAI1..3:0.181737034033;PAX4:0.179007110439;IRF7:0.167564515679;OCT4_SOX2{dimer}:0.158590500108;HES1:0.154339828158;FOXP1:0.133743594125;NR1H4:0.133640263162;HLF:0.125179233537;STAT5{A,B}:0.106693225081;FOXL1:0.0828621930512;AHR_ARNT_ARNT2:0.0796354693807;AR:0.0688201602156;MYOD1:0.0623203325947;PRRX1,2:0.0616698803593;NFE2:0.0568484159315;HOX{A5,B5}:0.0555606599267;HOXA9_MEIS1:0.0502988260453;NFE2L1:0.0252509404857;EVI1:0.0203018182099;PDX1:-0.0536955282653;HIF1A:-0.0632208840636;PAX2:-0.0660936534776;NKX6-1,2:-0.0697070749073;ZNF423:-0.0818625193825;HNF1A:-0.0823124151554;EN1,2:-0.0857084451917;POU5F1:-0.0890931714343;GZF1:-0.10145698231;FOS_FOS{B,L1}_JUN{B,D}:-0.119353602518;POU6F1:-0.121029928958;JUN:-0.123097145255;ALX1:-0.123426801697;UFEwm:-0.128506260662;GATA6:-0.136540004663;BACH2:-0.13881102344;RBPJ:-0.139087200234;DBP:-0.142913860736;RXRA_VDR{dimer}:-0.145660311032;TBX4,5:-0.167130857001;CDC5L:-0.168448826442;TLX1..3_NFIC{dimer}:-0.168640740641;LHX3,4:-0.168900254;EP300:-0.169634174607;GFI1B:-0.178864160861;LMO2:-0.187199529499;GCM1,2:-0.188447112509;IKZF2:-0.193898193222;ZFP161:-0.208370263907;RFX1:-0.218002172022;FOSL2:-0.222133266227;FOXO1,3,4:-0.229683141111;FOXP3:-0.236682190717;LEF1_TCF7_TCF7L1,2:-0.258323622376;MTF1:-0.266642579503;STAT2,4,6:-0.279584966019;STAT1,3:-0.302258269009;NFKB1_REL_RELA:-0.312159429766;MED-1{core}:-0.319047872153;TBP:-0.320479648544;KLF4:-0.325694060309;ONECUT1,2:-0.329555766478;NANOG:-0.330262924078;MYBL2:-0.337515453147;ZBTB6:-0.343681806299;XCPE1{core}:-0.356723724829;MEF2{A,B,C,D}:-0.358881895082;SREBF1,2:-0.379084749599;TFAP2{A,C}:-0.388097121382;TP53:-0.391577852931;CRX:-0.392110523869;FOX{D1,D2}:-0.399009600484;DMAP1_NCOR{1,2}_SMARC:-0.404651131786;RXR{A,B,G}:-0.408655175858;HOX{A4,D4}:-0.415826771294;SOX5:-0.436376952202;EBF1:-0.454189177066;SPIB:-0.454448891423;TFAP2B:-0.458922150704;HMGA1,2:-0.46975680265;GTF2I:-0.471482316836;HIC1:-0.471537483702;ADNP_IRX_SIX_ZHX:-0.489466901621;ALX4:-0.495531446364;GLI1..3:-0.514779163106;SPI1:-0.516891119492;PAX5:-0.522522552182;TAL1_TCF{3,4,12}:-0.52422771749;ESR1:-0.566128447167;REST:-0.57964548111;SOX2:-0.602844223609;HAND1,2:-0.614965238139;NFIL3:-0.638824547771;PRDM1:-0.657092774919;EGR1..3:-0.659167214718;HSF1,2:-0.68346532696;PATZ1:-0.684615001111;RUNX1..3:-0.687953736614;NR3C1:-0.694528526107;IRF1,2:-0.718451508733;ETS1,2:-0.722807172109;SP1:-0.74007571759;MAZ:-0.743315137436;NHLH1,2:-0.77969576485;GATA4:-0.781600434647;SOX17:-0.828420476435;PAX6:-0.846484553826;RREB1:-0.849034047205;MTE{core}:-0.859291631485;NANOG{mouse}:-0.933681346809;ZIC1..3:-0.94215942108;NKX2-3_NKX2-5:-0.951307672029;ATF2:-0.959866464966;MYFfamily:-1.00439025223;NKX2-2,8:-1.0078227963;SRF:-1.0349868312;TFCP2:-1.0579899385;MAFB:-1.06513870616;MZF1:-1.11116148826;T:-1.12254066754;TGIF1:-1.14767999466;NFATC1..3:-1.17471110946;ZNF238:-1.25158334561;XBP1:-1.36272310687;TFAP4:-1.4358179151;ATF6:-1.45622821923;SMAD1..7,9:-1.76198189913;HMX1:-2.20582487259;SPZ1:-2.329122408 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10816-111B6;search_select_hide=table117:FF:10816-111B6 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12326 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12326
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12326
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.561 |
| 10 | 10 | 0.127 |
| 100 | 100 | 0.176 |
| 101 | 101 | 0.805 |
| 102 | 102 | 0.861 |
| 103 | 103 | 0.0388 |
| 104 | 104 | 0.969 |
| 105 | 105 | 0.329 |
| 106 | 106 | 0.00529 |
| 107 | 107 | 0.0332 |
| 108 | 108 | 0.222 |
| 109 | 109 | 0.207 |
| 11 | 11 | 0.423 |
| 110 | 110 | 0.6 |
| 111 | 111 | 0.688 |
| 112 | 112 | 0.00119 |
| 113 | 113 | 0.0166 |
| 114 | 114 | 0.511 |
| 115 | 115 | 0.519 |
| 116 | 116 | 0.916 |
| 117 | 117 | 0.156 |
| 118 | 118 | 0.649 |
| 119 | 119 | 0.466 |
| 12 | 12 | 0.96 |
| 120 | 120 | 0.741 |
| 121 | 121 | 0.526 |
| 122 | 122 | 0.505 |
| 123 | 123 | 0.598 |
| 124 | 124 | 0.494 |
| 125 | 125 | 0.349 |
| 126 | 126 | 0.805 |
| 127 | 127 | 0.87 |
| 128 | 128 | 0.00257 |
| 129 | 129 | 0.373 |
| 13 | 13 | 0.001 |
| 130 | 130 | 0.0217 |
| 131 | 131 | 0.0958 |
| 132 | 132 | 0.745 |
| 133 | 133 | 0.305 |
| 134 | 134 | 0.282 |
| 135 | 135 | 0.057 |
| 136 | 136 | 0.0358 |
| 137 | 137 | 0.189 |
| 138 | 138 | 0.544 |
| 139 | 139 | 0.221 |
| 14 | 14 | 0.386 |
| 140 | 140 | 0.714 |
| 141 | 141 | 0.456 |
| 142 | 142 | 0.389 |
| 143 | 143 | 0.6 |
| 144 | 144 | 0.489 |
| 145 | 145 | 0.21 |
| 146 | 146 | 0.518 |
| 147 | 147 | 0.48 |
| 148 | 148 | 0.711 |
| 149 | 149 | 0.0298 |
| 15 | 15 | 0.56 |
| 150 | 150 | 0.877 |
| 151 | 151 | 0.649 |
| 152 | 152 | 0.0594 |
| 153 | 153 | 0.284 |
| 154 | 154 | 0.726 |
| 155 | 155 | 0.976 |
| 156 | 156 | 0.565 |
| 157 | 157 | 0.382 |
| 158 | 158 | 0.188 |
| 159 | 159 | 0.337 |
| 16 | 16 | 0.458 |
| 160 | 160 | 0.418 |
| 161 | 161 | 0.481 |
| 162 | 162 | 0.6 |
| 163 | 163 | 0.763 |
| 164 | 164 | 0.947 |
| 165 | 165 | 0.611 |
| 166 | 166 | 0.254 |
| 167 | 167 | 0.271 |
| 168 | 168 | 0.547 |
| 169 | 169 | 0.464 |
| 17 | 17 | 0.369 |
| 18 | 18 | 0.161 |
| 19 | 19 | 0.179 |
| 2 | 2 | 0.0976 |
| 20 | 20 | 0.0367 |
| 21 | 21 | 0.802 |
| 22 | 22 | 0.475 |
| 23 | 23 | 7.2037e-4 |
| 24 | 24 | 0.51 |
| 25 | 25 | 0.795 |
| 26 | 26 | 0.962 |
| 27 | 27 | 0.127 |
| 28 | 28 | 0.549 |
| 29 | 29 | 0.115 |
| 3 | 3 | 0.494 |
| 30 | 30 | 0.133 |
| 31 | 31 | 0.238 |
| 32 | 32 | 0.0364 |
| 33 | 33 | 0.491 |
| 34 | 34 | 0.146 |
| 35 | 35 | 0.575 |
| 36 | 36 | 0.277 |
| 37 | 37 | 0.942 |
| 38 | 38 | 0.976 |
| 39 | 39 | 0.636 |
| 4 | 4 | 0.39 |
| 40 | 40 | 0.283 |
| 41 | 41 | 0.237 |
| 42 | 42 | 0.862 |
| 43 | 43 | 0.334 |
| 44 | 44 | 0.73 |
| 45 | 45 | 0.297 |
| 46 | 46 | 0.313 |
| 47 | 47 | 0.91 |
| 48 | 48 | 0.972 |
| 49 | 49 | 0.653 |
| 5 | 5 | 0.339 |
| 50 | 50 | 0.918 |
| 51 | 51 | 0.242 |
| 52 | 52 | 0.143 |
| 53 | 53 | 0.361 |
| 54 | 54 | 0.398 |
| 55 | 55 | 0.0178 |
| 56 | 56 | 0.458 |
| 57 | 57 | 0.938 |
| 58 | 58 | 0.776 |
| 59 | 59 | 0.232 |
| 6 | 6 | 0.905 |
| 60 | 60 | 0.126 |
| 61 | 61 | 0.211 |
| 62 | 62 | 0.387 |
| 63 | 63 | 0.981 |
| 64 | 64 | 0.811 |
| 65 | 65 | 0.065 |
| 66 | 66 | 2.29854e-6 |
| 67 | 67 | 0.763 |
| 68 | 68 | 0.696 |
| 69 | 69 | 0.425 |
| 7 | 7 | 0.288 |
| 70 | 70 | 0.0591 |
| 71 | 71 | 0.376 |
| 72 | 72 | 0.484 |
| 73 | 73 | 0.399 |
| 74 | 74 | 0.557 |
| 75 | 75 | 0.16 |
| 76 | 76 | 0.366 |
| 77 | 77 | 0.349 |
| 78 | 78 | 0.485 |
| 79 | 79 | 0.329 |
| 8 | 8 | 0.833 |
| 80 | 80 | 0.0901 |
| 81 | 81 | 0.454 |
| 82 | 82 | 0.00758 |
| 83 | 83 | 0.473 |
| 84 | 84 | 0.427 |
| 85 | 85 | 0.0155 |
| 86 | 86 | 0.857 |
| 87 | 87 | 0.0743 |
| 88 | 88 | 0.704 |
| 89 | 89 | 0.0366 |
| 9 | 9 | 0.228 |
| 90 | 90 | 0.0552 |
| 91 | 91 | 0.0108 |
| 92 | 92 | 0.0319 |
| 93 | 93 | 0.896 |
| 94 | 94 | 0.156 |
| 95 | 95 | 0.219 |
| 96 | 96 | 0.143 |
| 97 | 97 | 0.691 |
| 98 | 98 | 0.953 |
| 99 | 99 | 0.931 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12326
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011472 human epitheloid carcinoma cell line: HelaS3 ENCODE sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011472 (human epitheloid carcinoma cell line: HelaS3 ENCODE sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
